Wall clock time and date at job start Tue Mar 31 2020 14:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47307 * 2 1 4 4 C 1.53005 * 109.47343 * 240.00125 * 2 1 3 5 5 C 1.52994 * 109.47429 * 119.99941 * 2 1 3 6 6 C 1.53004 * 109.47163 * 59.99669 * 5 2 1 7 7 S 1.81394 * 109.47225 * 179.97438 * 6 5 2 8 8 O 1.42103 * 110.54018 * 68.38457 * 7 6 5 9 9 O 1.42098 * 110.54765 * 291.62603 * 7 6 5 10 10 N 1.65603 * 104.44769 * 180.02562 * 7 6 5 11 11 C 1.46495 * 120.00444 * 275.79346 * 10 7 6 12 12 C 1.50698 * 109.47348 * 265.00143 * 11 10 7 13 13 H 1.07993 * 120.00071 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99991 * 179.97438 * 12 11 10 15 15 N 1.31506 * 119.99798 * 180.02562 * 14 12 11 16 16 Si 1.86796 * 119.99790 * 0.02562 * 14 12 11 17 17 H 1.48504 * 109.47101 * 90.00087 * 16 14 12 18 18 H 1.48499 * 109.47103 * 209.99699 * 16 14 12 19 19 H 1.48500 * 109.47590 * 329.99809 * 16 14 12 20 20 C 1.39674 * 119.99849 * 95.79811 * 10 7 6 21 21 C 1.38918 * 120.07012 * 301.08605 * 20 10 7 22 22 C 1.38109 * 119.92227 * 179.97438 * 21 20 10 23 23 C 1.38286 * 120.07248 * 359.97438 * 22 21 20 24 24 C 1.38281 * 120.15600 * 0.02562 * 23 22 21 25 25 C 1.38108 * 120.07327 * 359.97438 * 24 23 22 26 26 H 1.08995 * 109.46864 * 300.00487 * 1 2 3 27 27 H 1.09003 * 109.46840 * 60.00287 * 1 2 3 28 28 H 1.08996 * 109.46815 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47543 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46908 * 300.00194 * 3 2 1 31 31 H 1.09002 * 109.47447 * 59.99546 * 3 2 1 32 32 H 1.09000 * 109.46576 * 299.99892 * 4 2 1 33 33 H 1.09005 * 109.47062 * 59.99690 * 4 2 1 34 34 H 1.09003 * 109.47294 * 179.97438 * 4 2 1 35 35 H 1.09002 * 109.47010 * 300.00495 * 5 2 1 36 36 H 1.09000 * 109.47824 * 179.97438 * 5 2 1 37 37 H 1.09002 * 109.46483 * 60.00503 * 6 5 2 38 38 H 1.08995 * 109.47413 * 300.01026 * 6 5 2 39 39 H 1.09000 * 109.46841 * 24.99969 * 11 10 7 40 40 H 1.08999 * 109.47323 * 144.99767 * 11 10 7 41 41 H 0.97004 * 120.00212 * 179.97438 * 15 14 12 42 42 H 1.07994 * 120.03987 * 359.69762 * 21 20 10 43 43 H 1.07995 * 119.96067 * 179.97438 * 22 21 20 44 44 H 1.08005 * 119.92203 * 180.02562 * 23 22 21 45 45 H 1.07997 * 119.97063 * 180.02562 * 24 23 22 46 46 H 1.07992 * 120.04103 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.5300 -2.1637 1.2493 7 16 2.1353 -3.0190 2.7299 8 8 1.5231 -2.4886 3.8975 9 8 3.5427 -3.2026 2.6595 10 7 1.5176 -4.5504 2.6041 11 6 0.1574 -4.8321 3.0695 12 6 0.2079 -5.3561 4.4815 13 1 1.1582 -5.4685 4.9820 14 6 -0.9592 -5.6921 5.1344 15 7 -0.9150 -6.1490 6.3667 16 14 -2.6028 -5.4984 4.2682 17 1 -2.9351 -6.7551 3.5502 18 1 -3.6591 -5.2069 5.2705 19 1 -2.5210 -4.3793 3.2955 20 6 2.2935 -5.5734 2.0543 21 6 2.7801 -5.4582 0.7583 22 6 3.5474 -6.4714 0.2179 23 6 3.8319 -7.5993 0.9657 24 6 3.3492 -7.7172 2.2561 25 6 2.5812 -6.7078 2.8027 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1300 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1393 34 1 3.1301 -0.7208 -1.2495 35 1 1.6766 -0.2074 2.1392 36 1 3.1300 -0.7216 1.2490 37 1 1.8934 -2.6775 0.3593 38 1 0.4400 -2.1638 1.2492 39 1 -0.4327 -3.9160 3.0428 40 1 -0.3012 -5.5787 2.4210 41 1 -1.7361 -6.3850 6.8262 42 1 2.5549 -4.5794 0.1724 43 1 3.9257 -6.3827 -0.7897 44 1 4.4326 -8.3900 0.5408 45 1 3.5735 -8.5992 2.8376 46 1 2.2041 -6.8007 3.8103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232502986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:46 Heat of formation + Delta-G solvation = -76.733237 kcal Electronic energy + Delta-G solvation = -26788.488180 eV Core-core repulsion = 23190.081824 eV Total energy + Delta-G solvation = -3598.406355 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.33714 -39.02693 -38.21171 -37.10310 -36.88353 -34.58207 -32.34604 -31.78213 -31.09352 -28.94052 -28.14806 -28.11538 -25.27890 -24.38686 -23.39961 -22.87220 -20.09618 -19.70103 -19.13316 -18.86894 -17.84644 -17.52611 -16.97387 -16.64829 -16.19806 -15.71427 -15.61683 -15.53078 -14.91798 -14.81748 -14.77807 -14.53003 -14.21388 -14.13333 -13.80750 -13.67103 -13.45289 -13.20698 -13.02111 -12.84681 -12.81699 -12.80063 -12.58102 -12.54489 -12.51055 -12.25768 -12.19136 -12.04809 -11.91406 -11.57288 -11.51335 -11.50179 -11.29451 -10.78515 -10.41634 -9.78877 -9.18958 -8.29006 -6.34177 -0.81646 0.47388 0.56423 1.33459 1.37608 1.45856 1.61878 2.33443 2.85951 2.90856 3.02554 3.15321 3.45659 3.68737 3.79080 3.94124 4.03888 4.11418 4.21394 4.24113 4.37376 4.46732 4.58727 4.60732 4.63417 4.67391 4.73977 4.76912 4.87750 4.90661 4.92131 4.97401 5.07928 5.10518 5.10993 5.21997 5.22294 5.38149 5.43212 5.50399 5.51450 5.52483 5.67603 5.71625 5.84408 6.24159 6.33422 6.67265 7.26708 8.88522 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.009925 B = 0.005583 C = 0.004138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2820.582411 B = 5013.792056 C = 6764.264497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.057 4.057 3 C -0.146 4.146 4 C -0.151 4.151 5 C -0.112 4.112 6 C -0.600 4.600 7 S 2.580 3.420 8 O -0.987 6.987 9 O -0.984 6.984 10 N -0.943 5.943 11 C 0.230 3.770 12 C -0.533 4.533 13 H 0.027 0.973 14 C 0.008 3.992 15 N -0.948 5.948 16 Si 0.940 3.060 17 H -0.258 1.258 18 H -0.283 1.283 19 H -0.234 1.234 20 C 0.146 3.854 21 C -0.150 4.150 22 C -0.099 4.099 23 C -0.128 4.128 24 C -0.116 4.116 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.267 0.733 42 H 0.144 0.856 43 H 0.166 0.834 44 H 0.158 0.842 45 H 0.134 0.866 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 8.370 -22.115 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.058 4.058 3 C -0.203 4.203 4 C -0.208 4.208 5 C -0.151 4.151 6 C -0.734 4.734 7 S 2.681 3.319 8 O -0.977 6.977 9 O -0.975 6.975 10 N -0.771 5.771 11 C 0.107 3.893 12 C -0.572 4.572 13 H 0.046 0.954 14 C -0.190 4.190 15 N -0.588 5.588 16 Si 0.762 3.238 17 H -0.183 1.183 18 H -0.208 1.208 19 H -0.157 1.157 20 C 0.052 3.948 21 C -0.171 4.171 22 C -0.117 4.117 23 C -0.147 4.147 24 C -0.134 4.134 25 C -0.169 4.169 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.182 0.818 38 H 0.172 0.828 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.161 0.839 43 H 0.184 0.816 44 H 0.175 0.825 45 H 0.152 0.848 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.474 8.644 -21.187 23.528 hybrid contribution -1.182 -0.293 0.784 1.448 sum 4.292 8.351 -20.403 22.460 Atomic orbital electron populations 1.22045 0.94195 1.02419 1.02466 1.20459 0.96086 0.95701 0.93591 1.21923 1.01446 0.94398 1.02540 1.22021 1.01516 1.00717 0.96510 1.21622 1.01882 0.90458 1.01179 1.30609 1.14408 1.09052 1.19335 1.05834 0.73998 0.73796 0.78255 1.93583 1.78130 1.79075 1.46952 1.93511 1.30677 1.84879 1.88411 1.55142 1.23906 1.23526 1.74556 1.19399 0.78394 0.97715 0.93785 1.21558 0.93619 1.43146 0.98895 0.95444 1.25910 1.03595 0.94047 0.95443 1.70070 1.29486 1.45684 1.13565 0.85828 0.78051 0.80637 0.79281 1.18266 1.20847 1.15671 1.17658 0.94466 0.89990 0.92655 1.21475 1.01486 1.01883 0.92256 1.21376 0.96663 0.92464 1.01221 1.21514 1.00374 0.99193 0.93576 1.21315 0.97004 0.98161 0.96950 1.21589 0.99418 0.95911 1.00025 0.92874 0.91071 0.92174 0.92092 0.91072 0.92707 0.91865 0.91233 0.92034 0.90825 0.89800 0.81752 0.82830 0.93276 0.93139 0.92409 0.83862 0.81633 0.82461 0.84777 0.88344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 8.12 71.98 0.58 -1.81 16 2 C -0.06 -0.90 0.80 -52.18 -0.04 -0.94 16 3 C -0.15 -2.01 8.47 71.98 0.61 -1.40 16 4 C -0.15 -1.95 8.12 71.98 0.58 -1.37 16 5 C -0.11 -2.36 4.28 30.59 0.13 -2.23 16 6 C -0.60 -14.05 5.47 71.98 0.39 -13.66 16 7 S 2.58 99.40 5.08 -56.49 -0.29 99.11 16 8 O -0.99 -47.91 17.20 -127.65 -2.20 -50.11 16 9 O -0.98 -41.44 16.85 -127.65 -2.15 -43.59 16 10 N -0.94 -39.38 2.79 -343.14 -0.96 -40.34 16 11 C 0.23 10.74 3.95 85.63 0.34 11.08 16 12 C -0.53 -31.49 8.75 25.60 0.22 -31.27 16 13 H 0.03 1.86 7.21 -2.91 -0.02 1.84 16 14 C 0.01 0.45 5.47 84.66 0.46 0.91 16 15 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 16 Si 0.94 42.76 27.47 68.60 1.88 44.65 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.23 -9.35 6.54 99.48 0.65 -8.70 16 20 C 0.15 5.69 4.82 38.22 0.18 5.87 16 21 C -0.15 -4.33 9.31 22.40 0.21 -4.13 16 22 C -0.10 -2.30 10.04 22.25 0.22 -2.08 16 23 C -0.13 -3.14 10.04 22.29 0.22 -2.91 16 24 C -0.12 -3.71 10.04 22.25 0.22 -3.48 16 25 C -0.15 -6.17 9.51 22.40 0.21 -5.96 16 26 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.16 2.80 5.01 -2.39 -0.01 2.79 16 38 H 0.15 3.18 6.43 -2.39 -0.02 3.16 16 39 H 0.05 2.16 6.83 -2.39 -0.02 2.14 16 40 H 0.05 2.18 7.52 -2.39 -0.02 2.16 16 41 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.14 3.07 6.63 -2.91 -0.02 3.05 16 43 H 0.17 2.36 8.06 -2.91 -0.02 2.33 16 44 H 0.16 2.59 8.06 -2.91 -0.02 2.56 16 45 H 0.13 3.75 8.06 -2.91 -0.02 3.72 16 46 H 0.10 4.95 6.20 -2.91 -0.02 4.93 16 Total: -1.00 -82.95 375.74 2.05 -80.90 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.90 Total: 23.18 kcal Atomic # 6 Polarization: -57.93 SS G_CDS: 4.56 Total: -53.37 kcal Atomic # 7 Polarization: -100.11 SS G_CDS: -0.66 Total: -100.76 kcal Atomic # 8 Polarization: -89.35 SS G_CDS: -4.35 Total: -93.70 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.88 Total: 44.65 kcal Atomic # 16 Polarization: 99.40 SS G_CDS: -0.29 Total: 99.11 kcal Total: -82.95 2.05 -80.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232502986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.163 kcal (2) G-P(sol) polarization free energy of solvation -82.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds