Wall clock time and date at job start Tue Mar 31 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46955 * 2 1 4 4 C 1.38285 * 119.92579 * 90.00031 * 3 2 1 5 5 C 1.38105 * 120.07760 * 180.02562 * 4 3 2 6 6 C 1.38909 * 119.92190 * 0.02562 * 5 4 3 7 7 N 1.39677 * 120.07606 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99940 * 24.99243 * 7 6 5 9 9 C 1.53006 * 109.46998 * 275.00443 * 8 7 6 10 10 S 1.65594 * 119.99973 * 205.00129 * 7 6 5 11 11 O 1.42102 * 104.28206 * 26.06278 * 10 7 6 12 12 O 1.42101 * 104.27941 * 153.92362 * 10 7 6 13 13 C 1.81404 * 104.44789 * 269.99435 * 10 7 6 14 14 C 1.52999 * 109.47370 * 180.02562 * 13 10 7 15 15 C 1.52998 * 109.47406 * 179.97438 * 14 13 10 16 16 C 1.50690 * 109.47403 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00103 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46959 * 119.99735 * 20 18 16 23 23 H 1.48497 * 109.47381 * 240.00116 * 20 18 16 24 24 C 1.38913 * 119.85326 * 0.24627 * 6 5 4 25 25 C 1.38106 * 119.92262 * 359.49782 * 24 6 5 26 26 H 1.09005 * 109.47109 * 300.00160 * 1 2 3 27 27 H 1.09005 * 109.47059 * 59.99736 * 1 2 3 28 28 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47428 * 239.99761 * 2 1 3 30 30 H 1.09000 * 109.46825 * 119.99582 * 2 1 3 31 31 H 1.08004 * 119.96499 * 0.04403 * 4 3 2 32 32 H 1.07999 * 120.03670 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47175 * 155.00575 * 8 7 6 34 34 H 1.09001 * 109.47297 * 35.00082 * 8 7 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.46955 * 300.00226 * 9 8 7 37 37 H 1.09000 * 109.47050 * 60.00054 * 9 8 7 38 38 H 1.09002 * 109.46685 * 299.99881 * 13 10 7 39 39 H 1.09000 * 109.47157 * 59.99548 * 13 10 7 40 40 H 1.08993 * 109.47353 * 300.00385 * 14 13 10 41 41 H 1.09004 * 109.47053 * 60.00079 * 14 13 10 42 42 H 1.09003 * 109.47432 * 300.00707 * 15 14 13 43 43 H 1.09004 * 109.46635 * 60.00208 * 15 14 13 44 44 H 0.97001 * 120.00377 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.03896 * 179.72788 * 24 6 5 46 46 H 1.07997 * 119.96380 * 180.25327 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7221 3.3735 1.2021 6 6 2.9531 4.0302 0.0000 7 7 3.4176 5.3474 0.0000 8 6 4.1672 5.8598 1.1497 9 6 3.1889 6.3597 2.2146 10 16 3.1208 6.3300 -1.2995 11 8 1.9378 5.7970 -1.8790 12 8 3.1437 7.6436 -0.7581 13 6 4.5408 6.0693 -2.3977 14 6 4.3825 6.9337 -3.6502 15 6 5.5805 6.7143 -4.5761 16 6 5.4249 7.5661 -5.8094 17 1 4.5580 8.2003 -5.9218 18 6 6.3888 7.5352 -6.7949 19 7 7.4437 6.7618 -6.6588 20 14 6.1955 8.5906 -8.3239 21 1 4.9307 9.3639 -8.2350 22 1 7.3423 9.5285 -8.4262 23 1 6.1600 7.7192 -9.5258 24 6 2.7157 3.3758 -1.2021 25 6 2.2609 2.0717 -1.1985 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 1.5602 2.1328 32 1 2.9010 3.8810 2.1385 33 1 4.8067 6.6822 0.8291 34 1 4.7823 5.0625 1.5670 35 1 3.7467 6.7405 3.0702 36 1 2.5738 7.1569 1.7974 37 1 2.5494 5.5373 2.5352 38 1 5.4578 6.3475 -1.8782 39 1 4.5903 5.0189 -2.6846 40 1 3.4656 6.6560 -4.1698 41 1 4.3334 7.9840 -3.3629 42 1 6.4974 6.9923 -4.0563 43 1 5.6300 5.6640 -4.8635 44 1 8.1220 6.7403 -7.3519 45 1 2.8900 3.8849 -2.1384 46 1 2.0800 1.5610 -2.1327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264551320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:18 Heat of formation + Delta-G solvation = -65.796950 kcal Electronic energy + Delta-G solvation = -25707.193808 eV Core-core repulsion = 22109.261686 eV Total energy + Delta-G solvation = -3597.932122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.96668 -37.25809 -36.95907 -35.86508 -34.74500 -33.61621 -32.24366 -31.44772 -30.51056 -28.23501 -27.86478 -24.14747 -23.90345 -23.32060 -22.42323 -21.17946 -20.50385 -19.21899 -17.96275 -17.07659 -16.70452 -15.93545 -15.85657 -15.60513 -15.09962 -14.73451 -14.51425 -14.31338 -14.04986 -13.85686 -13.70790 -13.65593 -13.25147 -12.78877 -12.66322 -12.49451 -12.33600 -12.14631 -12.04991 -11.99012 -11.85880 -11.80923 -11.37998 -11.32022 -11.25352 -10.96664 -10.94500 -10.90700 -10.79760 -10.52880 -10.28663 -10.00615 -9.43008 -9.15487 -9.02073 -8.43754 -8.04058 -6.08294 -4.11541 0.22922 1.27442 1.31634 2.49437 3.27813 3.35451 3.40263 3.60069 3.90884 4.14250 4.30231 4.40625 4.64926 4.68907 4.82488 4.87200 4.98497 5.00061 5.02743 5.11853 5.17840 5.20686 5.28159 5.29850 5.36868 5.46156 5.49495 5.67667 5.70279 5.76005 5.77108 5.82673 5.98797 6.00289 6.04681 6.18204 6.20777 6.37343 6.39965 6.51171 6.55739 6.80965 6.97052 7.53498 7.62491 7.89476 8.29408 8.94787 9.53413 11.02924 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.003090 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.069814 B = 9059.147878 C =10310.248717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 C -0.113 4.113 4 C -0.091 4.091 5 C -0.152 4.152 6 C 0.175 3.825 7 N -0.943 5.943 8 C 0.112 3.888 9 C -0.178 4.178 10 S 2.584 3.416 11 O -0.945 6.945 12 O -0.949 6.949 13 C -0.607 4.607 14 C -0.105 4.105 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.152 4.152 25 C -0.079 4.079 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.122 0.878 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.130 0.870 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.867 -11.408 19.369 24.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.118 4.118 3 C -0.114 4.114 4 C -0.110 4.110 5 C -0.174 4.174 6 C 0.079 3.921 7 N -0.766 5.766 8 C -0.012 4.012 9 C -0.237 4.237 10 S 2.683 3.317 11 O -0.935 6.935 12 O -0.939 6.939 13 C -0.739 4.739 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.077 0.923 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.173 4.173 25 C -0.098 4.098 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.148 0.852 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.071 0.929 45 H 0.147 0.853 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -9.446 -10.796 19.236 23.995 hybrid contribution 0.689 0.319 -0.971 1.233 sum -8.756 -10.477 18.265 22.804 Atomic orbital electron populations 1.21769 0.94935 1.01463 1.02360 1.20478 0.96023 0.92622 1.02659 1.19829 1.01797 0.96659 0.93081 1.20815 0.98644 0.94030 0.97514 1.20965 1.04027 0.95760 0.96640 1.17476 0.96665 0.83337 0.94611 1.55884 1.66225 1.21007 1.33521 1.21443 0.93975 0.99622 0.86199 1.22332 1.00354 1.02212 0.98793 1.06093 0.77579 0.73651 0.74415 1.93614 1.43596 1.78933 1.77398 1.93580 1.87500 1.35979 1.76865 1.30622 1.18855 1.11024 1.13411 1.21532 1.03631 0.97110 0.92218 1.19068 0.91091 0.97633 0.92941 1.21277 1.06699 1.25234 1.03257 0.92294 1.25021 0.95185 0.95617 0.98546 1.69964 1.10239 1.38765 1.34384 0.86499 0.78210 0.80279 0.82841 1.19580 1.20919 1.20903 1.21102 1.04063 0.95717 0.96440 1.20804 0.97579 0.93530 0.97875 0.92655 0.92396 0.92613 0.91075 0.91288 0.85973 0.85229 0.89055 0.89663 0.91078 0.91322 0.91841 0.85148 0.85141 0.91456 0.91483 0.96060 0.96023 0.92912 0.85270 0.85436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.89 37.16 0.37 -0.72 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.79 16 3 C -0.11 -1.14 5.14 -104.59 -0.54 -1.68 16 4 C -0.09 -0.88 9.69 -39.61 -0.38 -1.27 16 5 C -0.15 -1.62 8.87 -39.38 -0.35 -1.97 16 6 C 0.18 2.24 6.05 -83.79 -0.51 1.73 16 7 N -0.94 -11.93 2.93 -58.63 -0.17 -12.10 16 8 C 0.11 1.11 5.33 -4.04 -0.02 1.09 16 9 C -0.18 -1.66 9.97 37.16 0.37 -1.29 16 10 S 2.58 40.10 4.74 -107.50 -0.51 39.59 16 11 O -0.95 -17.00 15.15 -57.54 -0.87 -17.88 16 12 O -0.95 -16.60 16.75 -57.54 -0.96 -17.56 16 13 C -0.61 -9.52 6.04 37.16 0.22 -9.29 16 14 C -0.11 -2.13 5.16 -26.73 -0.14 -2.26 16 15 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 16 C -0.53 -14.75 9.11 -34.44 -0.31 -15.06 16 17 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 20 Si 0.89 21.50 29.54 -169.99 -5.02 16.47 16 21 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.15 -2.04 8.42 -39.38 -0.33 -2.38 16 25 C -0.08 -0.92 9.69 -39.61 -0.38 -1.31 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.12 0.89 8.06 -52.48 -0.42 0.46 16 32 H 0.13 1.12 5.24 -52.49 -0.28 0.85 16 33 H 0.09 0.86 7.61 -51.93 -0.40 0.46 16 34 H 0.08 0.66 7.74 -51.93 -0.40 0.26 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.78 7.90 -51.93 -0.41 0.37 16 37 H 0.06 0.54 5.87 -51.93 -0.31 0.24 16 38 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 39 H 0.13 1.86 7.20 -51.92 -0.37 1.48 16 40 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.13 1.80 5.13 -52.49 -0.27 1.53 16 46 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -33.94 381.87 -10.92 -44.86 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -7.46 Total: -0.43 kcal Atomic # 6 Polarization: -30.61 SS G_CDS: -2.41 Total: -33.02 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.56 Total: -37.80 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -1.84 Total: -35.44 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 40.10 SS G_CDS: -0.51 Total: 39.59 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.94 -10.92 -44.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264551320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.942 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds