Wall clock time and date at job start Tue Mar 31 2020 14:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.46955 * 2 1 4 4 C 1.38285 * 119.92579 * 90.00031 * 3 2 1 5 5 C 1.38105 * 120.07760 * 180.02562 * 4 3 2 6 6 C 1.38909 * 119.92190 * 0.02562 * 5 4 3 7 7 N 1.39677 * 120.07606 * 179.97438 * 6 5 4 8 8 C 1.46500 * 119.99940 * 24.99243 * 7 6 5 9 9 C 1.53006 * 109.46998 * 275.00443 * 8 7 6 10 10 S 1.65594 * 119.99973 * 205.00129 * 7 6 5 11 11 O 1.42102 * 104.28206 * 26.06278 * 10 7 6 12 12 O 1.42101 * 104.27941 * 153.92362 * 10 7 6 13 13 C 1.81404 * 104.44789 * 269.99435 * 10 7 6 14 14 C 1.52999 * 109.47370 * 180.02562 * 13 10 7 15 15 C 1.52998 * 109.47406 * 179.97438 * 14 13 10 16 16 C 1.50690 * 109.47403 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00103 * 359.97438 * 16 15 14 18 18 C 1.37883 * 120.00352 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99760 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48507 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46959 * 119.99735 * 20 18 16 23 23 H 1.48497 * 109.47381 * 240.00116 * 20 18 16 24 24 C 1.38913 * 119.85326 * 0.24627 * 6 5 4 25 25 C 1.38106 * 119.92262 * 359.49782 * 24 6 5 26 26 H 1.09005 * 109.47109 * 300.00160 * 1 2 3 27 27 H 1.09005 * 109.47059 * 59.99736 * 1 2 3 28 28 H 1.08996 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47428 * 239.99761 * 2 1 3 30 30 H 1.09000 * 109.46825 * 119.99582 * 2 1 3 31 31 H 1.08004 * 119.96499 * 0.04403 * 4 3 2 32 32 H 1.07999 * 120.03670 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47175 * 155.00575 * 8 7 6 34 34 H 1.09001 * 109.47297 * 35.00082 * 8 7 6 35 35 H 1.09001 * 109.47002 * 179.97438 * 9 8 7 36 36 H 1.08993 * 109.46955 * 300.00226 * 9 8 7 37 37 H 1.09000 * 109.47050 * 60.00054 * 9 8 7 38 38 H 1.09002 * 109.46685 * 299.99881 * 13 10 7 39 39 H 1.09000 * 109.47157 * 59.99548 * 13 10 7 40 40 H 1.08993 * 109.47353 * 300.00385 * 14 13 10 41 41 H 1.09004 * 109.47053 * 60.00079 * 14 13 10 42 42 H 1.09003 * 109.47432 * 300.00707 * 15 14 13 43 43 H 1.09004 * 109.46635 * 60.00208 * 15 14 13 44 44 H 0.97001 * 120.00377 * 180.02562 * 19 18 16 45 45 H 1.07994 * 120.03896 * 179.72788 * 24 6 5 46 46 H 1.07997 * 119.96380 * 180.25327 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2623 2.0713 1.1985 5 6 2.7221 3.3735 1.2021 6 6 2.9531 4.0302 0.0000 7 7 3.4176 5.3474 0.0000 8 6 4.1672 5.8598 1.1497 9 6 3.1889 6.3597 2.2146 10 16 3.1208 6.3300 -1.2995 11 8 1.9378 5.7970 -1.8790 12 8 3.1437 7.6436 -0.7581 13 6 4.5408 6.0693 -2.3977 14 6 4.3825 6.9337 -3.6502 15 6 5.5805 6.7143 -4.5761 16 6 5.4249 7.5661 -5.8094 17 1 4.5580 8.2003 -5.9218 18 6 6.3888 7.5352 -6.7949 19 7 7.4437 6.7618 -6.6588 20 14 6.1955 8.5906 -8.3239 21 1 4.9307 9.3639 -8.2350 22 1 7.3423 9.5285 -8.4262 23 1 6.1600 7.7192 -9.5258 24 6 2.7157 3.3758 -1.2021 25 6 2.2609 2.0717 -1.1985 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 1.5602 2.1328 32 1 2.9010 3.8810 2.1385 33 1 4.8067 6.6822 0.8291 34 1 4.7823 5.0625 1.5670 35 1 3.7467 6.7405 3.0702 36 1 2.5738 7.1569 1.7974 37 1 2.5494 5.5373 2.5352 38 1 5.4578 6.3475 -1.8782 39 1 4.5903 5.0189 -2.6846 40 1 3.4656 6.6560 -4.1698 41 1 4.3334 7.9840 -3.3629 42 1 6.4974 6.9923 -4.0563 43 1 5.6300 5.6640 -4.8635 44 1 8.1220 6.7403 -7.3519 45 1 2.8900 3.8849 -2.1384 46 1 2.0800 1.5610 -2.1327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264551320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:18 Heat of formation + Delta-G solvation = -85.591825 kcal Electronic energy + Delta-G solvation = -25708.052178 eV Core-core repulsion = 22109.261686 eV Total energy + Delta-G solvation = -3598.790492 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82075 -38.51260 -37.86554 -37.19669 -36.54668 -34.35103 -34.21231 -32.26983 -31.30791 -29.74574 -29.00844 -25.74360 -24.82685 -24.29856 -23.23167 -22.47654 -21.77299 -20.30383 -19.12779 -18.61927 -18.04897 -17.39676 -16.88615 -16.66137 -16.50818 -15.95276 -15.82293 -15.45957 -14.95835 -14.69062 -14.59986 -14.48845 -14.33034 -14.13444 -14.03660 -13.61962 -13.59886 -13.39030 -13.33361 -13.12982 -13.09015 -12.82303 -12.79240 -12.71606 -12.66344 -12.22662 -12.01322 -11.99428 -11.83402 -11.68497 -11.58997 -11.45174 -11.32192 -10.92038 -10.60704 -9.87241 -8.92625 -8.25202 -6.36502 -1.01707 0.41356 0.46834 1.38206 1.38341 1.39295 1.52339 2.37755 2.55973 2.85413 2.94368 3.08423 3.37426 3.66932 3.74084 3.93461 3.95858 4.04780 4.14883 4.25928 4.29616 4.37869 4.44081 4.49105 4.52683 4.59923 4.64236 4.75112 4.78365 4.83923 4.95833 4.98404 5.02656 5.09703 5.14976 5.23045 5.29481 5.39334 5.41354 5.46437 5.54484 5.57204 5.65104 5.75782 5.76669 6.13640 6.15968 6.78840 7.33029 8.86568 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.003090 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.069814 B = 9059.147878 C =10310.248717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 C -0.112 4.112 4 C -0.089 4.089 5 C -0.150 4.150 6 C 0.154 3.846 7 N -0.936 5.936 8 C 0.098 3.902 9 C -0.178 4.178 10 S 2.608 3.392 11 O -0.974 6.974 12 O -0.970 6.970 13 C -0.607 4.607 14 C -0.104 4.104 15 C 0.032 3.968 16 C -0.552 4.552 17 H 0.060 0.940 18 C 0.003 3.997 19 N -0.929 5.929 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.276 1.276 23 H -0.276 1.276 24 C -0.181 4.181 25 C -0.095 4.095 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.154 0.846 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.096 0.904 36 H 0.042 0.958 37 H 0.071 0.929 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.005 0.995 43 H 0.003 0.997 44 H 0.265 0.735 45 H 0.113 0.887 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.236 -12.313 21.162 26.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.113 4.113 4 C -0.108 4.108 5 C -0.171 4.171 6 C 0.059 3.941 7 N -0.762 5.762 8 C -0.025 4.025 9 C -0.237 4.237 10 S 2.706 3.294 11 O -0.964 6.964 12 O -0.960 6.960 13 C -0.738 4.738 14 C -0.144 4.144 15 C -0.006 4.006 16 C -0.590 4.590 17 H 0.079 0.921 18 C -0.195 4.195 19 N -0.569 5.569 20 Si 0.788 3.212 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.202 1.202 24 C -0.202 4.202 25 C -0.113 4.113 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.172 0.828 32 H 0.170 0.830 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.115 0.885 36 H 0.061 0.939 37 H 0.090 0.910 38 H 0.168 0.832 39 H 0.160 0.840 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.074 0.926 45 H 0.131 0.869 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.817 -11.694 21.023 25.983 hybrid contribution 0.799 0.501 -1.445 1.725 sum -9.018 -11.194 19.579 24.289 Atomic orbital electron populations 1.21762 0.94670 1.02281 1.01735 1.20536 0.96130 0.91170 1.03795 1.20165 1.00690 0.97776 0.92685 1.21217 0.97267 0.93688 0.98580 1.21261 1.03150 0.96136 0.96570 1.17668 0.97965 0.83246 0.95256 1.55553 1.66678 1.20896 1.33081 1.21822 0.94335 1.00805 0.85497 1.22351 1.00324 1.01744 0.99250 1.05140 0.76656 0.73188 0.74426 1.93572 1.44997 1.79381 1.78434 1.93547 1.87626 1.37541 1.77312 1.30566 1.20473 1.10837 1.11933 1.21329 1.01366 0.98304 0.93379 1.18950 0.92486 0.95950 0.93199 1.21741 1.06919 1.25756 1.04620 0.92147 1.25938 0.94788 0.96892 1.01901 1.70074 1.11045 1.40144 1.35643 0.85420 0.78536 0.78582 0.78678 1.18782 1.20113 1.20171 1.21192 1.05854 0.96798 0.96391 1.21011 0.97931 0.93205 0.99162 0.92577 0.93738 0.91106 0.90738 0.89406 0.82841 0.82997 0.88733 0.86824 0.88512 0.93859 0.90970 0.83243 0.84035 0.91520 0.91258 0.97705 0.97895 0.92569 0.86881 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.89 71.98 0.71 -1.16 16 2 C -0.08 -1.03 6.06 29.85 0.18 -0.85 16 3 C -0.11 -2.07 5.14 -19.84 -0.10 -2.17 16 4 C -0.09 -1.46 9.69 22.25 0.22 -1.25 16 5 C -0.15 -2.83 8.87 22.40 0.20 -2.63 16 6 C 0.15 3.80 6.05 38.21 0.23 4.03 16 7 N -0.94 -23.00 2.93 -339.40 -0.99 -23.99 16 8 C 0.10 1.77 5.33 86.38 0.46 2.23 16 9 C -0.18 -2.95 9.97 71.98 0.72 -2.23 16 10 S 2.61 81.90 4.74 -56.49 -0.27 81.64 16 11 O -0.97 -36.06 15.15 -127.65 -1.93 -38.00 16 12 O -0.97 -34.14 16.75 -127.65 -2.14 -36.28 16 13 C -0.61 -19.38 6.04 71.98 0.44 -18.94 16 14 C -0.10 -4.34 5.16 30.59 0.16 -4.18 16 15 C 0.03 1.69 4.97 29.84 0.15 1.84 16 16 C -0.55 -31.60 9.11 25.60 0.23 -31.37 16 17 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 18 C 0.00 0.18 5.46 84.66 0.46 0.64 16 19 N -0.93 -55.83 13.29 21.45 0.28 -55.54 16 20 Si 0.96 44.31 29.54 68.60 2.03 46.34 16 21 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 24 C -0.18 -4.94 8.42 22.40 0.19 -4.75 16 25 C -0.09 -2.18 9.69 22.25 0.22 -1.97 16 26 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 32 H 0.15 2.10 5.24 -2.91 -0.02 2.08 16 33 H 0.09 1.64 7.61 -2.39 -0.02 1.62 16 34 H 0.11 1.41 7.74 -2.39 -0.02 1.39 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.04 0.94 7.90 -2.39 -0.02 0.92 16 37 H 0.07 1.04 5.87 -2.39 -0.01 1.03 16 38 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 39 H 0.14 4.17 7.20 -2.39 -0.02 4.16 16 40 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 41 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 45 H 0.11 3.34 5.13 -2.91 -0.01 3.32 16 46 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -74.20 381.87 2.38 -71.81 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.95 Total: 16.78 kcal Atomic # 6 Polarization: -67.21 SS G_CDS: 4.46 Total: -62.76 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -0.71 Total: -79.53 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -4.07 Total: -74.27 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 81.90 SS G_CDS: -0.27 Total: 81.64 kcal Total: -74.20 2.38 -71.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264551320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.778 kcal (2) G-P(sol) polarization free energy of solvation -74.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds