Wall clock time and date at job start Tue Mar 31 2020 14:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38237 * 120.00001 * 59.72567 * 4 2 1 6 6 C 1.38237 * 120.00164 * 179.76476 * 5 4 2 7 7 C 1.38232 * 119.99658 * 0.48819 * 6 5 4 8 8 C 1.50699 * 119.99950 * 179.76917 * 7 6 5 9 9 N 1.46502 * 109.47002 * 270.01830 * 8 7 6 10 10 S 1.65597 * 120.00294 * 165.00036 * 9 8 7 11 11 O 1.42099 * 104.28008 * 181.07142 * 10 9 8 12 12 O 1.42103 * 104.27466 * 308.92786 * 10 9 8 13 13 C 1.81407 * 104.45014 * 64.99659 * 10 9 8 14 14 C 1.52999 * 109.47259 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47184 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.46998 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00168 * 359.97438 * 16 15 14 18 18 C 1.37886 * 119.99859 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99779 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99598 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47476 * 60.00240 * 20 18 16 22 22 H 1.48505 * 109.46842 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47312 * 299.99626 * 20 18 16 24 24 C 1.38238 * 120.00261 * 359.78461 * 7 6 5 25 25 C 1.38233 * 119.99957 * 239.99778 * 4 2 1 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 29 29 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08007 * 119.99774 * 359.97438 * 5 4 2 34 34 H 1.08001 * 120.00084 * 180.24925 * 6 5 4 35 35 H 1.08993 * 109.47425 * 30.01501 * 8 7 6 36 36 H 1.09005 * 109.47338 * 150.01905 * 8 7 6 37 37 H 0.97003 * 120.00196 * 344.99769 * 9 8 7 38 38 H 1.08996 * 109.47146 * 300.00103 * 13 10 9 39 39 H 1.08996 * 109.46446 * 60.00338 * 13 10 9 40 40 H 1.09006 * 109.47088 * 300.00486 * 14 13 10 41 41 H 1.09001 * 109.47081 * 59.99746 * 14 13 10 42 42 H 1.09005 * 109.46876 * 299.99536 * 15 14 13 43 43 H 1.08992 * 109.47560 * 59.99866 * 15 14 13 44 44 H 0.97000 * 119.99551 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.00252 * 179.97438 * 24 7 6 46 46 H 1.07991 * 120.00142 * 0.02562 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6937 -0.2414 -2.4860 6 6 2.1584 -0.8901 -3.6147 7 6 2.9535 -2.0138 -3.4879 8 6 3.4559 -2.7241 -4.7184 9 7 2.4910 -3.7518 -5.1172 10 16 2.5830 -4.4342 -6.6232 11 8 1.4954 -5.3480 -6.6609 12 8 2.6379 -3.3238 -7.5082 13 6 4.1632 -5.3250 -6.6207 14 6 4.3668 -6.0063 -7.9755 15 6 5.6993 -6.7581 -7.9732 16 6 5.9000 -7.4286 -9.3078 17 1 5.1518 -7.3288 -10.0802 18 6 7.0389 -8.1694 -9.5428 19 7 7.9503 -8.2904 -8.6023 20 14 7.2874 -9.0011 -11.1968 21 1 7.2992 -7.9748 -12.2701 22 1 8.5814 -9.7297 -11.1951 23 1 6.1795 -9.9594 -11.4404 24 6 3.2875 -2.4861 -2.2324 25 6 2.8271 -1.8343 -1.1037 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.0688 0.6339 -2.5850 34 1 1.8972 -0.5213 -4.5956 35 1 3.5770 -2.0055 -5.5288 36 1 4.4162 -3.1921 -4.5012 37 1 1.7981 -4.0326 -4.4990 38 1 4.9765 -4.6216 -6.4424 39 1 4.1545 -6.0779 -5.8327 40 1 3.5534 -6.7096 -8.1544 41 1 4.3755 -5.2530 -8.7633 42 1 6.5128 -6.0550 -7.7943 43 1 5.6902 -7.5113 -7.1855 44 1 8.7513 -8.8119 -8.7675 45 1 3.9084 -3.3643 -2.1333 46 1 3.0877 -2.2035 -0.1228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264553477.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:19 Heat of formation + Delta-G solvation = -105.150695 kcal Electronic energy + Delta-G solvation = -24398.291579 eV Core-core repulsion = 20798.652951 eV Total energy + Delta-G solvation = -3599.638628 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62966 -38.20526 -37.30888 -37.02698 -36.45643 -35.26134 -34.15633 -31.84455 -30.98157 -29.64460 -27.96614 -26.60168 -25.61424 -23.81693 -22.92390 -22.41368 -20.80927 -20.35991 -18.76281 -18.57288 -17.81859 -17.19391 -17.01832 -16.51872 -16.48652 -16.10278 -15.85196 -15.43004 -14.99530 -14.58448 -14.49064 -14.39701 -14.36215 -14.10057 -13.80885 -13.64349 -13.50419 -13.21110 -13.19273 -13.11342 -12.96346 -12.81839 -12.72957 -12.64142 -12.57229 -12.17392 -12.11133 -11.99485 -11.73405 -11.53867 -11.49228 -11.38317 -11.12802 -10.56670 -10.39577 -9.80092 -9.52139 -8.22364 -6.33204 -0.75263 0.35701 0.52389 1.40343 1.42806 1.50722 1.83989 2.40039 2.76053 2.86903 3.11080 3.24985 3.63945 3.76629 3.84183 3.88132 3.95922 4.12224 4.16976 4.33950 4.39855 4.41710 4.46837 4.56677 4.59195 4.67142 4.76511 4.82027 4.85985 4.98354 4.99086 5.00879 5.07666 5.08619 5.20160 5.21314 5.36072 5.39854 5.45907 5.54021 5.63971 5.69303 5.77017 5.79942 6.06981 6.11467 6.20271 6.82259 7.35895 8.88795 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.028183 B = 0.002029 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.259120 B =13795.502512 C =14314.855107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 C -0.143 4.143 4 C -0.075 4.075 5 C -0.124 4.124 6 C -0.111 4.111 7 C -0.111 4.111 8 C 0.147 3.853 9 N -1.106 6.106 10 S 2.632 3.368 11 O -0.993 6.993 12 O -0.990 6.990 13 C -0.608 4.608 14 C -0.107 4.107 15 C 0.031 3.969 16 C -0.554 4.554 17 H 0.060 0.940 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.268 1.268 24 C -0.105 4.105 25 C -0.128 4.128 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.126 0.874 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.424 0.576 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.004 0.996 43 H 0.003 0.997 44 H 0.265 0.735 45 H 0.139 0.861 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.308 18.552 20.565 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.076 4.076 5 C -0.142 4.142 6 C -0.130 4.130 7 C -0.113 4.113 8 C 0.022 3.978 9 N -0.867 5.867 10 S 2.728 3.272 11 O -0.984 6.984 12 O -0.980 6.980 13 C -0.739 4.739 14 C -0.147 4.147 15 C -0.007 4.007 16 C -0.592 4.592 17 H 0.078 0.922 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.787 3.213 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.123 4.123 25 C -0.146 4.146 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.113 0.887 37 H 0.260 0.740 38 H 0.166 0.834 39 H 0.165 0.835 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.023 0.977 43 H 0.021 0.979 44 H 0.074 0.926 45 H 0.156 0.844 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -12.669 18.639 19.784 29.989 hybrid contribution 0.728 -0.941 -0.324 1.233 sum -11.941 17.698 19.460 28.888 Atomic orbital electron populations 1.21852 0.93892 1.01860 1.02465 1.20191 0.96275 0.96320 0.94825 1.21846 1.00971 0.94732 1.02466 1.20174 0.96710 0.95488 0.95202 1.21139 1.00643 1.00619 0.91813 1.21285 0.96927 0.95393 0.99386 1.19785 1.00332 0.96839 0.94320 1.20428 0.91753 0.89906 0.95733 1.55394 1.43454 1.52599 1.35234 1.04153 0.76219 0.73823 0.73039 1.93533 1.51957 1.66773 1.86121 1.93529 1.87681 1.51897 1.64869 1.30492 1.22373 1.14363 1.06678 1.21318 1.00724 0.99436 0.93173 1.18961 0.91682 0.94326 0.95774 1.21726 1.05103 1.31759 1.00595 0.92191 1.25935 0.95648 0.97087 1.00915 1.70061 1.10066 1.41611 1.35137 0.85537 0.77560 0.78738 0.79460 1.19260 1.20618 1.19290 1.21317 0.99458 0.99986 0.91579 1.21316 0.98323 0.95717 0.99274 0.93086 0.91273 0.92549 0.89788 0.91295 0.92958 0.92529 0.85008 0.85651 0.89625 0.88674 0.74027 0.83430 0.83478 0.91662 0.91477 0.97740 0.97876 0.92642 0.84358 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.00 71.98 0.65 -0.72 16 2 C -0.06 -0.59 3.09 -11.54 -0.04 -0.63 16 3 C -0.14 -1.32 9.01 71.98 0.65 -0.67 16 4 C -0.08 -1.05 4.78 -19.87 -0.09 -1.15 16 5 C -0.12 -1.88 8.71 22.27 0.19 -1.68 16 6 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16 7 C -0.11 -1.89 5.28 -19.87 -0.10 -2.00 16 8 C 0.15 2.58 6.26 85.63 0.54 3.11 16 9 N -1.11 -22.06 5.88 -190.79 -1.12 -23.18 16 10 S 2.63 73.32 5.46 -56.49 -0.31 73.01 16 11 O -0.99 -34.12 18.08 -127.65 -2.31 -36.43 16 12 O -0.99 -33.52 17.50 -127.65 -2.23 -35.75 16 13 C -0.61 -17.59 6.07 71.98 0.44 -17.15 16 14 C -0.11 -4.31 5.16 30.59 0.16 -4.16 16 15 C 0.03 1.58 4.97 29.85 0.15 1.73 16 16 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.14 5.46 84.66 0.46 0.60 16 19 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 20 Si 0.96 44.20 29.54 68.60 2.03 46.22 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 C -0.10 -1.58 9.70 22.27 0.22 -1.37 16 25 C -0.13 -1.80 9.67 22.27 0.22 -1.59 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.06 0.55 7.37 -2.39 -0.02 0.53 16 29 H 0.08 0.75 7.88 -2.39 -0.02 0.74 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.53 7.41 -2.39 -0.02 0.51 16 33 H 0.13 1.61 7.10 -2.91 -0.02 1.59 16 34 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 35 H 0.09 1.58 7.64 -2.39 -0.02 1.56 16 36 H 0.10 1.29 8.09 -2.38 -0.02 1.27 16 37 H 0.42 7.37 8.61 -96.75 -0.83 6.53 16 38 H 0.15 3.63 8.14 -2.39 -0.02 3.61 16 39 H 0.15 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.06 2.59 8.14 -2.38 -0.02 2.57 16 41 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 42 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 43 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 44 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 45 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 46 H 0.14 1.42 7.95 -2.92 -0.02 1.40 16 Total: -1.00 -74.45 392.66 0.34 -74.12 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.12 Total: 15.91 kcal Atomic # 6 Polarization: -62.49 SS G_CDS: 3.88 Total: -58.61 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -0.84 Total: -78.48 kcal Atomic # 8 Polarization: -67.64 SS G_CDS: -4.54 Total: -72.18 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 73.32 SS G_CDS: -0.31 Total: 73.01 kcal Total: -74.45 0.34 -74.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264553477.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.032 kcal (2) G-P(sol) polarization free energy of solvation -74.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds