Wall clock time and date at job start Tue Mar 31 2020 15:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 C 1.53003 * 109.46952 * 119.99901 * 2 1 3 5 5 N 1.46501 * 109.47118 * 64.99859 * 4 2 1 6 6 C 1.39678 * 119.99698 * 85.00037 * 5 4 2 7 7 C 1.38915 * 120.06984 * 155.00263 * 6 5 4 8 8 C 1.38104 * 119.92359 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.07208 * 359.97438 * 8 7 6 10 10 C 1.38290 * 120.15288 * 0.02562 * 9 8 7 11 11 C 1.38100 * 120.07105 * 359.97438 * 10 9 8 12 12 S 1.65599 * 119.99994 * 264.99762 * 5 4 2 13 13 O 1.42092 * 104.27636 * 26.07390 * 12 5 4 14 14 O 1.42105 * 104.27714 * 153.92995 * 12 5 4 15 15 C 1.81398 * 104.45121 * 270.00016 * 12 5 4 16 16 C 1.53001 * 109.47103 * 180.02562 * 15 12 5 17 17 C 1.52997 * 109.46874 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47157 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00547 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00088 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99464 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46799 * 90.00200 * 22 20 18 24 24 H 1.48503 * 109.46876 * 209.99754 * 22 20 18 25 25 H 1.48492 * 109.47182 * 330.00331 * 22 20 18 26 26 H 1.08998 * 109.46785 * 60.00300 * 1 2 3 27 27 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46596 * 300.00126 * 1 2 3 29 29 H 1.09005 * 109.47229 * 239.99344 * 2 1 3 30 30 H 1.08999 * 109.47090 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46616 * 299.99724 * 3 2 1 32 32 H 1.09002 * 109.47061 * 59.99744 * 3 2 1 33 33 H 1.09001 * 109.46925 * 305.00104 * 4 2 1 34 34 H 1.08997 * 109.46908 * 184.99892 * 4 2 1 35 35 H 1.07998 * 120.03739 * 359.69591 * 7 6 5 36 36 H 1.08001 * 119.96576 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.92458 * 180.02562 * 9 8 7 38 38 H 1.07997 * 119.96313 * 180.02562 * 10 9 8 39 39 H 1.08007 * 120.03349 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47315 * 300.00411 * 15 12 5 41 41 H 1.08999 * 109.47102 * 59.99995 * 15 12 5 42 42 H 1.09000 * 109.46709 * 299.99680 * 16 15 12 43 43 H 1.08999 * 109.47335 * 59.99906 * 16 15 12 44 44 H 1.08997 * 109.47369 * 300.00072 * 17 16 15 45 45 H 1.09001 * 109.47475 * 60.00300 * 17 16 15 46 46 H 0.97006 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4502 -3.0480 0.5000 7 6 2.4197 -4.3943 0.8410 8 6 3.2094 -5.2966 0.1558 9 6 4.0294 -4.8612 -0.8691 10 6 4.0622 -3.5217 -1.2112 11 6 3.2751 -2.6141 -0.5300 12 16 0.2685 -2.6434 1.9432 13 8 -0.5579 -1.4881 1.9784 14 8 -0.1201 -3.8002 1.2150 15 6 0.8034 -3.0947 3.6168 16 6 -0.4007 -3.5890 4.4211 17 6 0.0504 -3.9690 5.8328 18 6 -1.1356 -4.4553 6.6252 19 1 -2.1132 -4.4902 6.1676 20 6 -0.9727 -4.8556 7.9346 21 7 -2.0076 -5.2805 8.6259 22 14 0.7182 -4.7946 8.7263 23 1 0.9170 -3.4698 9.3673 24 1 0.8226 -5.8620 9.7534 25 1 1.7589 -5.0032 7.6878 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5140 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.7826 -4.7343 1.6440 36 1 3.1865 -6.3434 0.4206 37 1 4.6457 -5.5690 -1.4037 38 1 4.7034 -3.1851 -2.0123 39 1 3.3014 -1.5680 -0.7974 40 1 1.5505 -3.8861 3.5584 41 1 1.2355 -2.2227 4.1076 42 1 -1.1481 -2.7978 4.4795 43 1 -0.8324 -4.4611 3.9301 44 1 0.7981 -4.7600 5.7748 45 1 0.4818 -3.0966 6.3236 46 1 -1.8930 -5.5618 9.5472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264561430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:17 Heat of formation + Delta-G solvation = -54.285805 kcal Electronic energy + Delta-G solvation = -26373.729307 eV Core-core repulsion = 22776.296346 eV Total energy + Delta-G solvation = -3597.432961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.94056 -37.79318 -36.81771 -35.92954 -34.89570 -34.25863 -32.26791 -31.10028 -29.68945 -28.47318 -27.25474 -26.24791 -23.82174 -22.84707 -22.16506 -20.61954 -20.44796 -19.30268 -17.90034 -17.28201 -17.00808 -16.30736 -16.27953 -15.75462 -15.19630 -14.70436 -14.45201 -14.37153 -14.17322 -14.11369 -13.57429 -13.41177 -13.04732 -12.97143 -12.70549 -12.44473 -12.40178 -12.23040 -12.17786 -12.00975 -11.88354 -11.75553 -11.61418 -11.53308 -11.12414 -11.02771 -10.97064 -10.78085 -10.67523 -10.41420 -10.13863 -9.90502 -9.62365 -9.30486 -9.08398 -8.61702 -8.21544 -6.11308 -4.10970 0.15078 1.24504 1.25734 2.42993 3.24380 3.32305 3.34142 3.59097 3.84734 4.07023 4.21805 4.37697 4.55624 4.69100 4.75300 4.77309 4.85987 4.90775 4.98181 5.01694 5.22000 5.23625 5.25577 5.30587 5.42567 5.45431 5.57375 5.64743 5.66245 5.75071 5.79185 5.87588 5.93967 6.05277 6.10030 6.18250 6.18912 6.35108 6.40092 6.42828 6.46552 6.59943 6.91007 7.07394 7.21384 7.67287 8.44129 8.92704 9.49591 11.01904 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003669 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.666760 B = 7628.657229 C = 8684.926361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.145 4.145 4 C 0.118 3.882 5 N -0.941 5.941 6 C 0.179 3.821 7 C -0.157 4.157 8 C -0.082 4.082 9 C -0.149 4.149 10 C -0.094 4.094 11 C -0.155 4.155 12 S 2.583 3.417 13 O -0.938 6.938 14 O -0.943 6.943 15 C -0.616 4.616 16 C -0.096 4.096 17 C -0.004 4.004 18 C -0.528 4.528 19 H 0.075 0.925 20 C 0.069 3.931 21 N -0.899 5.899 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.266 1.266 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.021 0.979 45 H 0.016 0.984 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.718 9.070 -20.224 26.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.140 4.140 3 C -0.203 4.203 4 C -0.006 4.006 5 N -0.763 5.763 6 C 0.083 3.917 7 C -0.178 4.178 8 C -0.101 4.101 9 C -0.168 4.168 10 C -0.113 4.113 11 C -0.177 4.177 12 S 2.681 3.319 13 O -0.928 6.928 14 O -0.934 6.934 15 C -0.748 4.748 16 C -0.136 4.136 17 C -0.042 4.042 18 C -0.566 4.566 19 H 0.093 0.907 20 C -0.133 4.133 21 N -0.538 5.538 22 Si 0.706 3.294 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.190 1.190 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.147 0.853 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.039 0.961 45 H 0.034 0.966 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.746 9.058 -20.408 26.219 hybrid contribution 1.303 -0.081 1.049 1.674 sum 15.048 8.977 -19.359 26.111 Atomic orbital electron populations 1.21988 0.93563 1.02410 1.02110 1.21669 0.97668 0.96379 0.98290 1.21784 1.00711 0.95327 1.02476 1.21647 1.01380 0.77994 0.99566 1.55853 1.42032 1.14553 1.63897 1.17491 0.92900 0.88608 0.92671 1.21113 1.01941 0.91720 1.03025 1.20949 0.94692 0.99438 0.94994 1.21096 1.00834 0.95906 0.98960 1.20976 0.98224 0.93174 0.98925 1.20989 0.99769 1.00551 0.96353 1.06116 0.73503 0.74734 0.77530 1.93657 1.63534 1.48638 1.87011 1.93628 1.79945 1.50566 1.69214 1.30688 1.11107 1.11873 1.21095 1.21333 0.92673 1.01157 0.98427 1.19530 0.97727 0.96414 0.90578 1.21116 0.95095 1.43593 0.96812 0.90704 1.25017 0.96681 0.94505 0.97123 1.69908 1.29952 1.43894 1.10015 0.86791 0.85171 0.78043 0.79373 1.20177 1.21187 1.19035 0.93292 0.93018 0.90805 0.90441 0.92621 0.92223 0.92147 0.88966 0.89637 0.85434 0.85354 0.86016 0.85877 0.85254 0.85256 0.85170 0.90871 0.90907 0.96111 0.96558 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 7.57 37.16 0.28 -1.40 16 2 C -0.12 -1.11 2.82 -90.62 -0.26 -1.36 16 3 C -0.14 -1.02 9.19 37.16 0.34 -0.68 16 4 C 0.12 1.12 4.31 -4.04 -0.02 1.10 16 5 N -0.94 -11.19 2.65 -58.63 -0.16 -11.34 16 6 C 0.18 2.17 6.04 -83.78 -0.51 1.66 16 7 C -0.16 -2.00 8.41 -39.38 -0.33 -2.33 16 8 C -0.08 -0.89 10.04 -39.61 -0.40 -1.29 16 9 C -0.15 -1.39 10.04 -39.54 -0.40 -1.79 16 10 C -0.09 -0.85 10.04 -39.61 -0.40 -1.25 16 11 C -0.15 -1.56 8.81 -39.38 -0.35 -1.91 16 12 S 2.58 37.93 4.10 -107.50 -0.44 37.49 16 13 O -0.94 -15.05 13.01 -57.54 -0.75 -15.79 16 14 O -0.94 -16.45 15.17 -57.54 -0.87 -17.32 16 15 C -0.62 -9.01 6.04 37.16 0.22 -8.79 16 16 C -0.10 -1.86 5.16 -26.73 -0.14 -2.00 16 17 C 0.00 -0.09 4.04 -27.89 -0.11 -0.20 16 18 C -0.53 -14.93 9.66 -34.44 -0.33 -15.26 16 19 H 0.07 2.27 7.99 -52.48 -0.42 1.85 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 22 Si 0.88 21.27 27.47 -169.99 -4.67 16.61 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.72 5.68 -51.93 -0.29 0.42 16 28 H 0.07 0.92 7.39 -51.93 -0.38 0.53 16 29 H 0.08 0.69 5.92 -51.93 -0.31 0.38 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.82 7.61 -51.93 -0.40 0.42 16 34 H 0.09 0.63 7.74 -51.93 -0.40 0.23 16 35 H 0.13 1.69 5.14 -52.49 -0.27 1.42 16 36 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 37 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.13 1.07 5.33 -52.48 -0.28 0.79 16 40 H 0.13 1.69 7.17 -51.93 -0.37 1.32 16 41 H 0.13 1.61 8.14 -51.92 -0.42 1.19 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.02 0.47 7.20 -51.93 -0.37 0.10 16 45 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 LS Contribution 368.98 15.07 5.56 5.56 Total: -1.00 -33.96 368.98 -10.32 -44.28 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -7.29 Total: 0.88 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: -2.48 Total: -33.61 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.62 Total: -38.10 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -1.62 Total: -33.12 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: 37.93 SS G_CDS: -0.44 Total: 37.49 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.96 -10.32 -44.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264561430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.003 kcal (2) G-P(sol) polarization free energy of solvation -33.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds