Wall clock time and date at job start Tue Mar 31 2020 15:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47281 * 2 1 4 4 C 1.53003 * 109.46952 * 119.99901 * 2 1 3 5 5 N 1.46501 * 109.47118 * 64.99859 * 4 2 1 6 6 C 1.39678 * 119.99698 * 85.00037 * 5 4 2 7 7 C 1.38915 * 120.06984 * 155.00263 * 6 5 4 8 8 C 1.38104 * 119.92359 * 179.97438 * 7 6 5 9 9 C 1.38288 * 120.07208 * 359.97438 * 8 7 6 10 10 C 1.38290 * 120.15288 * 0.02562 * 9 8 7 11 11 C 1.38100 * 120.07105 * 359.97438 * 10 9 8 12 12 S 1.65599 * 119.99994 * 264.99762 * 5 4 2 13 13 O 1.42092 * 104.27636 * 26.07390 * 12 5 4 14 14 O 1.42105 * 104.27714 * 153.92995 * 12 5 4 15 15 C 1.81398 * 104.45121 * 270.00016 * 12 5 4 16 16 C 1.53001 * 109.47103 * 180.02562 * 15 12 5 17 17 C 1.52997 * 109.46874 * 180.02562 * 16 15 12 18 18 C 1.50698 * 109.47157 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99734 * 0.02562 * 18 17 16 20 20 C 1.37881 * 120.00547 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00088 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99464 * 0.02562 * 20 18 17 23 23 H 1.48504 * 109.46799 * 90.00200 * 22 20 18 24 24 H 1.48503 * 109.46876 * 209.99754 * 22 20 18 25 25 H 1.48492 * 109.47182 * 330.00331 * 22 20 18 26 26 H 1.08998 * 109.46785 * 60.00300 * 1 2 3 27 27 H 1.09001 * 109.46812 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46596 * 300.00126 * 1 2 3 29 29 H 1.09005 * 109.47229 * 239.99344 * 2 1 3 30 30 H 1.08999 * 109.47090 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46616 * 299.99724 * 3 2 1 32 32 H 1.09002 * 109.47061 * 59.99744 * 3 2 1 33 33 H 1.09001 * 109.46925 * 305.00104 * 4 2 1 34 34 H 1.08997 * 109.46908 * 184.99892 * 4 2 1 35 35 H 1.07998 * 120.03739 * 359.69591 * 7 6 5 36 36 H 1.08001 * 119.96576 * 179.97438 * 8 7 6 37 37 H 1.08007 * 119.92458 * 180.02562 * 9 8 7 38 38 H 1.07997 * 119.96313 * 180.02562 * 10 9 8 39 39 H 1.08007 * 120.03349 * 179.97438 * 11 10 9 40 40 H 1.08997 * 109.47315 * 300.00411 * 15 12 5 41 41 H 1.08999 * 109.47102 * 59.99995 * 15 12 5 42 42 H 1.09000 * 109.46709 * 299.99680 * 16 15 12 43 43 H 1.08999 * 109.47335 * 59.99906 * 16 15 12 44 44 H 1.08997 * 109.47369 * 300.00072 * 17 16 15 45 45 H 1.09001 * 109.47475 * 60.00300 * 17 16 15 46 46 H 0.97006 * 119.99627 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4502 -3.0480 0.5000 7 6 2.4197 -4.3943 0.8410 8 6 3.2094 -5.2966 0.1558 9 6 4.0294 -4.8612 -0.8691 10 6 4.0622 -3.5217 -1.2112 11 6 3.2751 -2.6141 -0.5300 12 16 0.2685 -2.6434 1.9432 13 8 -0.5579 -1.4881 1.9784 14 8 -0.1201 -3.8002 1.2150 15 6 0.8034 -3.0947 3.6168 16 6 -0.4007 -3.5890 4.4211 17 6 0.0504 -3.9690 5.8328 18 6 -1.1356 -4.4553 6.6252 19 1 -2.1132 -4.4902 6.1676 20 6 -0.9727 -4.8556 7.9346 21 7 -2.0076 -5.2805 8.6259 22 14 0.7182 -4.7946 8.7263 23 1 0.9170 -3.4698 9.3673 24 1 0.8226 -5.8620 9.7534 25 1 1.7589 -5.0032 7.6878 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5139 0.8900 29 1 1.8934 -0.5140 -0.8900 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6053 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 1.7826 -4.7343 1.6440 36 1 3.1865 -6.3434 0.4206 37 1 4.6457 -5.5690 -1.4037 38 1 4.7034 -3.1851 -2.0123 39 1 3.3014 -1.5680 -0.7974 40 1 1.5505 -3.8861 3.5584 41 1 1.2355 -2.2227 4.1076 42 1 -1.1481 -2.7978 4.4795 43 1 -0.8324 -4.4611 3.9301 44 1 0.7981 -4.7600 5.7748 45 1 0.4818 -3.0966 6.3236 46 1 -1.8930 -5.5618 9.5472 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264561430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:17 Heat of formation + Delta-G solvation = -74.982491 kcal Electronic energy + Delta-G solvation = -26374.626783 eV Core-core repulsion = 22776.296346 eV Total energy + Delta-G solvation = -3598.330437 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.72914 -38.80056 -37.80493 -37.14896 -36.58875 -35.04136 -34.30688 -31.86197 -30.45990 -30.24717 -28.03354 -26.97871 -25.51178 -23.77651 -22.96979 -22.18484 -21.34401 -20.28894 -19.11887 -18.86930 -18.17421 -17.59252 -17.06831 -16.88453 -16.31973 -15.99368 -15.82443 -15.44268 -15.13532 -14.94490 -14.84882 -14.37873 -14.28485 -14.10384 -13.79180 -13.72632 -13.65651 -13.34047 -13.29534 -13.25479 -12.83726 -12.77175 -12.74514 -12.61767 -12.42819 -12.35413 -11.93006 -11.88105 -11.70335 -11.65302 -11.46209 -11.43049 -11.35723 -10.98640 -10.80268 -9.85222 -9.03444 -8.32572 -6.38937 -1.00059 0.46301 0.49288 1.34666 1.37300 1.40956 1.48886 2.33896 2.60214 2.91886 2.97422 3.02426 3.35548 3.63047 3.73261 3.86358 3.98240 4.03382 4.06443 4.20785 4.23739 4.33853 4.46054 4.53832 4.56106 4.62584 4.70505 4.73932 4.79726 4.84580 4.87967 4.89306 5.03251 5.12886 5.13570 5.24875 5.26306 5.38500 5.39553 5.47034 5.52774 5.58503 5.60216 5.66753 5.67739 6.15827 6.21642 6.68873 7.25826 8.84383 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013881 B = 0.003669 C = 0.003223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.666760 B = 7628.657229 C = 8684.926361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.141 4.141 4 C 0.107 3.893 5 N -0.933 5.933 6 C 0.160 3.840 7 C -0.187 4.187 8 C -0.096 4.096 9 C -0.148 4.148 10 C -0.091 4.091 11 C -0.155 4.155 12 S 2.597 3.403 13 O -0.957 6.957 14 O -0.978 6.978 15 C -0.612 4.612 16 C -0.101 4.101 17 C -0.004 4.004 18 C -0.545 4.545 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.951 5.951 22 Si 0.953 3.047 23 H -0.263 1.263 24 H -0.284 1.284 25 H -0.241 1.241 26 H 0.058 0.942 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.083 0.917 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.031 0.969 45 H 0.032 0.968 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.972 10.485 -21.598 30.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.199 4.199 4 C -0.016 4.016 5 N -0.757 5.757 6 C 0.064 3.936 7 C -0.209 4.209 8 C -0.115 4.115 9 C -0.167 4.167 10 C -0.110 4.110 11 C -0.177 4.177 12 S 2.696 3.304 13 O -0.947 6.947 14 O -0.968 6.968 15 C -0.743 4.743 16 C -0.140 4.140 17 C -0.042 4.042 18 C -0.583 4.583 19 H 0.049 0.951 20 C -0.194 4.194 21 N -0.591 5.591 22 Si 0.776 3.224 23 H -0.187 1.187 24 H -0.209 1.209 25 H -0.164 1.164 26 H 0.077 0.923 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.156 0.844 37 H 0.166 0.834 38 H 0.173 0.827 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.176 0.824 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.991 10.480 -21.798 30.144 hybrid contribution -0.094 -0.537 1.370 1.475 sum 17.897 9.944 -20.428 28.922 Atomic orbital electron populations 1.22008 0.95937 1.00535 1.02005 1.21667 0.95550 0.98014 0.98441 1.21760 1.01948 0.93488 1.02667 1.21996 1.03243 0.76433 0.99955 1.55497 1.41196 1.15571 1.63457 1.17688 0.93752 0.88354 0.93774 1.21225 1.03020 0.92806 1.03843 1.21204 0.94900 0.99848 0.95542 1.21457 1.00223 0.96861 0.98159 1.21404 0.97766 0.92788 0.99035 1.21277 0.99080 1.01889 0.95471 1.05405 0.73887 0.73765 0.77322 1.93635 1.64802 1.49029 1.87272 1.93579 1.81148 1.52037 1.70056 1.30603 1.09402 1.13592 1.20705 1.21175 0.94665 1.00857 0.97285 1.19494 0.95765 0.97032 0.91956 1.21521 0.95344 1.43782 0.97699 0.95136 1.26092 1.01652 0.93886 0.97770 1.70078 1.32944 1.45427 1.10639 0.85618 0.79546 0.78603 0.78679 1.18738 1.20940 1.16393 0.92321 0.95731 0.92024 0.89862 0.90576 0.91798 0.92290 0.88561 0.86686 0.86974 0.84401 0.83437 0.82664 0.83281 0.83466 0.82359 0.91497 0.92023 0.95101 0.94924 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 7.57 71.98 0.55 -2.84 16 2 C -0.12 -1.89 2.82 -10.79 -0.03 -1.92 16 3 C -0.14 -1.55 9.19 71.98 0.66 -0.89 16 4 C 0.11 1.76 4.31 86.38 0.37 2.13 16 5 N -0.93 -20.98 2.65 -339.41 -0.90 -21.88 16 6 C 0.16 3.62 6.04 38.21 0.23 3.85 16 7 C -0.19 -4.70 8.41 22.40 0.19 -4.51 16 8 C -0.10 -1.98 10.04 22.25 0.22 -1.76 16 9 C -0.15 -2.34 10.04 22.29 0.22 -2.12 16 10 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 11 C -0.16 -2.67 8.81 22.40 0.20 -2.47 16 12 S 2.60 76.88 4.10 -56.49 -0.23 76.65 16 13 O -0.96 -31.33 13.01 -127.65 -1.66 -32.99 16 14 O -0.98 -35.44 15.17 -127.65 -1.94 -37.38 16 15 C -0.61 -17.34 6.04 71.98 0.43 -16.91 16 16 C -0.10 -3.94 5.16 30.59 0.16 -3.78 16 17 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 18 C -0.55 -31.83 9.66 25.60 0.25 -31.58 16 19 H 0.03 1.97 7.99 -2.91 -0.02 1.95 16 20 C 0.00 0.17 5.47 84.66 0.46 0.64 16 21 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 22 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 23 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.24 -9.90 6.54 99.48 0.65 -9.24 16 26 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.02 0.68 5.68 -2.39 -0.01 0.67 16 28 H 0.06 1.53 7.39 -2.39 -0.02 1.52 16 29 H 0.08 1.25 5.92 -2.38 -0.01 1.24 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 1.51 7.61 -2.39 -0.02 1.49 16 34 H 0.12 1.24 7.74 -2.39 -0.02 1.22 16 35 H 0.11 3.04 5.14 -2.91 -0.01 3.03 16 36 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 38 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 39 H 0.15 1.87 5.33 -2.91 -0.02 1.85 16 40 H 0.15 3.65 7.17 -2.39 -0.02 3.63 16 41 H 0.16 3.55 8.14 -2.39 -0.02 3.53 16 42 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 45 H 0.03 1.39 7.57 -2.39 -0.02 1.37 16 46 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 Total: -1.00 -77.14 368.98 2.61 -74.53 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: 0.90 Total: 18.98 kcal Atomic # 6 Polarization: -67.55 SS G_CDS: 4.26 Total: -63.29 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.60 Total: -81.69 kcal Atomic # 8 Polarization: -66.77 SS G_CDS: -3.60 Total: -70.37 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: 76.88 SS G_CDS: -0.23 Total: 76.65 kcal Total: -77.14 2.61 -74.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264561430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.455 kcal (2) G-P(sol) polarization free energy of solvation -77.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds