Wall clock time and date at job start Tue Mar 31 2020 14:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.39673 * 119.99605 * 180.02562 * 14 13 2 16 16 C 1.38914 * 120.07707 * 359.72057 * 15 14 13 17 17 C 1.38106 * 119.92380 * 179.76726 * 16 15 14 18 18 C 1.38287 * 120.07267 * 0.51577 * 17 16 15 19 19 C 1.50701 * 119.92365 * 179.72214 * 18 17 16 20 20 S 1.81402 * 109.46738 * 270.02013 * 19 18 17 21 21 C 1.81407 * 101.91928 * 180.02562 * 20 19 18 22 22 O 1.42095 * 108.57938 * 294.48252 * 20 19 18 23 23 O 1.42093 * 108.57952 * 65.51668 * 20 19 18 24 24 C 1.38283 * 120.15072 * 359.74237 * 18 17 16 25 25 C 1.38101 * 120.07597 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 28 28 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 31 31 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 32 32 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 38 38 H 1.07998 * 120.03713 * 0.02562 * 16 15 14 39 39 H 1.07994 * 119.96460 * 180.25714 * 17 16 15 40 40 H 1.08994 * 109.47299 * 30.02087 * 19 18 17 41 41 H 1.09002 * 109.47442 * 150.02258 * 19 18 17 42 42 H 1.09000 * 109.47183 * 60.00245 * 21 20 19 43 43 H 1.09001 * 109.47106 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47330 * 299.99872 * 21 20 19 45 45 H 1.08009 * 119.96048 * 180.02562 * 24 18 17 46 46 H 1.08005 * 120.03673 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8894 -0.5073 3.7141 16 6 2.6836 -1.6396 3.8434 17 6 3.0197 -2.1056 5.0993 18 6 2.5578 -1.4524 6.2273 19 6 2.9215 -1.9674 7.5961 20 16 1.6710 -3.1616 8.1446 21 6 2.2991 -3.6380 9.7784 22 8 0.4370 -2.4783 8.3163 23 8 1.7230 -4.2961 7.2906 24 6 1.7626 -0.3280 6.1021 25 6 1.4276 0.1467 4.8493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2493 33 1 1.6767 -1.7489 -1.2491 34 1 2.8610 -1.8832 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7580 2.3564 38 1 3.0412 -2.1526 2.9629 39 1 3.6405 -2.9834 5.2006 40 1 3.8955 -2.4547 7.5540 41 1 2.9618 -1.1350 8.2987 42 1 2.3574 -2.7562 10.4166 43 1 1.6255 -4.3675 10.2281 44 1 3.2915 -4.0761 9.6726 45 1 1.4039 0.1800 6.9852 46 1 0.8061 1.0247 4.7522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266211386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:20 Heat of formation + Delta-G solvation = -60.396066 kcal Electronic energy + Delta-G solvation = -24975.821781 eV Core-core repulsion = 21378.123858 eV Total energy + Delta-G solvation = -3597.697922 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.62096 -37.63279 -37.14934 -36.17135 -34.80504 -32.51529 -31.26443 -30.89950 -29.92829 -27.38993 -26.71750 -26.52102 -25.28124 -23.11827 -22.35854 -20.95151 -19.08979 -18.29534 -17.20694 -16.89025 -16.60117 -16.37154 -16.26614 -15.54955 -15.10490 -14.60007 -14.42942 -14.16234 -13.93171 -13.67072 -13.58061 -13.39941 -13.12550 -12.97109 -12.83697 -12.70430 -12.34429 -12.23291 -12.15478 -12.08302 -11.79029 -11.46065 -11.23398 -11.04699 -10.97044 -10.93683 -10.86011 -10.65917 -10.39295 -10.26710 -9.97519 -9.61478 -9.23282 -8.95979 -8.91115 -8.38589 -7.22192 -6.02895 -4.03921 -0.34039 1.48649 1.59375 2.51565 3.29308 3.36448 3.38400 3.41356 3.67226 3.70576 3.90081 4.33606 4.35218 4.41505 4.43388 4.70727 4.99130 5.03685 5.16587 5.23684 5.32807 5.41295 5.43539 5.56755 5.62708 5.73380 5.78939 6.04371 6.12665 6.15151 6.22566 6.34590 6.35744 6.42258 6.55930 6.61535 6.62904 6.86868 7.02002 7.05079 7.08615 7.50242 7.59404 7.72043 7.91381 7.95661 8.38040 9.00607 9.59349 11.08557 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.002109 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.864158 B =13274.792955 C =13598.618927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.126 4.126 4 C 0.036 3.964 5 C -0.511 4.511 6 H 0.059 0.941 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.128 3.872 14 N -0.732 5.732 15 C 0.240 3.760 16 C -0.200 4.200 17 C -0.047 4.047 18 C -0.175 4.175 19 C -0.539 4.539 20 S 2.407 3.593 21 C -0.664 4.664 22 O -0.937 6.937 23 O -0.935 6.935 24 C -0.049 4.049 25 C -0.205 4.205 26 H 0.029 0.971 27 H 0.066 0.934 28 H 0.047 0.953 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.029 0.971 32 H 0.018 0.982 33 H 0.018 0.982 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.400 0.600 38 H 0.129 0.871 39 H 0.125 0.875 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.915 0.161 26.792 26.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.071 4.071 3 C -0.184 4.184 4 C -0.001 4.001 5 C -0.549 4.549 6 H 0.077 0.923 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.005 3.995 14 N -0.358 5.358 15 C 0.132 3.868 16 C -0.223 4.223 17 C -0.067 4.067 18 C -0.179 4.179 19 C -0.668 4.668 20 S 2.590 3.410 21 C -0.812 4.812 22 O -0.934 6.934 23 O -0.932 6.932 24 C -0.069 4.069 25 C -0.228 4.228 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.147 0.853 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.152 0.848 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.301 -0.391 26.076 26.111 hybrid contribution 0.326 0.918 -0.465 1.079 sum 1.627 0.527 25.611 25.668 Atomic orbital electron populations 1.21754 0.95240 1.01181 1.00257 1.20865 0.95517 0.95838 0.94894 1.21749 1.00423 0.95944 1.00247 1.19093 0.96252 0.95219 0.89578 1.21178 1.31174 1.12063 0.90514 0.92287 1.25018 0.95334 0.95074 0.99117 1.69959 1.36990 1.22997 1.23468 0.86636 0.79194 0.79406 0.83012 1.20777 1.21318 1.19945 1.21675 0.98259 0.95956 0.83646 1.45162 1.55781 1.32445 1.02438 1.18053 0.91281 0.91809 0.85700 1.20710 1.04839 0.98763 0.97990 1.20815 0.96700 0.97789 0.91407 1.18453 1.07439 1.00825 0.91182 1.29046 1.17021 1.16212 1.04474 1.08556 0.77868 0.77085 0.77468 1.30365 1.13598 1.12449 1.24811 1.93584 1.39196 1.74818 1.85848 1.93597 1.86898 1.49262 1.63475 1.20730 0.94842 0.94195 0.97125 1.20546 1.07494 1.03566 0.91199 0.95169 0.91504 0.93373 0.93444 0.91513 0.95192 0.96415 0.96361 0.93032 0.92373 0.92299 0.76396 0.85344 0.85717 0.84730 0.84805 0.85550 0.85509 0.85498 0.85848 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 2 C -0.07 -1.31 0.54 -154.51 -0.08 -1.40 16 3 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 4 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 5 C -0.51 -13.46 7.65 -34.44 -0.26 -13.72 16 6 H 0.06 1.51 5.68 -52.48 -0.30 1.21 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 13 C 0.13 2.09 3.80 -4.04 -0.02 2.08 16 14 N -0.73 -10.39 5.14 -58.63 -0.30 -10.69 16 15 C 0.24 3.33 6.65 -83.79 -0.56 2.78 16 16 C -0.20 -2.75 9.31 -39.38 -0.37 -3.12 16 17 C -0.05 -0.57 9.69 -39.61 -0.38 -0.96 16 18 C -0.17 -1.92 5.14 -104.59 -0.54 -2.45 16 19 C -0.54 -3.49 5.93 36.01 0.21 -3.28 16 20 S 2.41 19.46 5.34 -107.50 -0.57 18.88 16 21 C -0.66 -2.44 10.62 101.05 1.07 -1.36 16 22 O -0.94 -11.21 18.10 -57.83 -1.05 -12.26 16 23 O -0.94 -11.52 18.10 -57.83 -1.05 -12.56 16 24 C -0.05 -0.56 9.69 -39.62 -0.38 -0.94 16 25 C -0.21 -2.55 9.90 -39.38 -0.39 -2.94 16 26 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 27 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 31 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 36 H 0.06 0.99 7.94 -51.93 -0.41 0.58 16 37 H 0.40 5.27 6.18 -40.82 -0.25 5.02 16 38 H 0.13 1.75 6.73 -52.49 -0.35 1.40 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.13 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.13 0.47 8.08 -51.92 -0.42 0.05 16 42 H 0.13 0.21 8.14 -51.92 -0.42 -0.22 16 43 H 0.13 0.45 8.14 -51.92 -0.42 0.03 16 44 H 0.13 0.22 8.14 -51.92 -0.42 -0.20 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 382.42 15.07 5.76 5.76 Total: -1.00 -34.90 382.42 -10.13 -45.02 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.33 Total: 2.12 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: -1.31 Total: -27.00 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: 0.44 Total: -36.09 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -2.09 Total: -24.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 19.46 SS G_CDS: -0.57 Total: 18.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.90 -10.13 -45.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266211386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.372 kcal (2) G-P(sol) polarization free energy of solvation -34.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds