Wall clock time and date at job start Tue Mar 31 2020 14:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47227 * 90.00066 * 9 7 5 11 11 H 1.48500 * 109.46628 * 209.99752 * 9 7 5 12 12 H 1.48493 * 109.47109 * 329.99411 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.39673 * 119.99605 * 180.02562 * 14 13 2 16 16 C 1.38914 * 120.07707 * 359.72057 * 15 14 13 17 17 C 1.38106 * 119.92380 * 179.76726 * 16 15 14 18 18 C 1.38287 * 120.07267 * 0.51577 * 17 16 15 19 19 C 1.50701 * 119.92365 * 179.72214 * 18 17 16 20 20 S 1.81402 * 109.46738 * 270.02013 * 19 18 17 21 21 C 1.81407 * 101.91928 * 180.02562 * 20 19 18 22 22 O 1.42095 * 108.57938 * 294.48252 * 20 19 18 23 23 O 1.42093 * 108.57952 * 65.51668 * 20 19 18 24 24 C 1.38283 * 120.15072 * 359.74237 * 18 17 16 25 25 C 1.38101 * 120.07597 * 359.97438 * 24 18 17 26 26 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 27 27 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 28 28 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 31 31 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 32 32 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 33 33 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 34 34 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 36 36 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 37 37 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 38 38 H 1.07998 * 120.03713 * 0.02562 * 16 15 14 39 39 H 1.07994 * 119.96460 * 180.25714 * 17 16 15 40 40 H 1.08994 * 109.47299 * 30.02087 * 19 18 17 41 41 H 1.09002 * 109.47442 * 150.02258 * 19 18 17 42 42 H 1.09000 * 109.47183 * 60.00245 * 21 20 19 43 43 H 1.09001 * 109.47106 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47330 * 299.99872 * 21 20 19 45 45 H 1.08009 * 119.96048 * 180.02562 * 24 18 17 46 46 H 1.08005 * 120.03673 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 2.2273 1.4394 -5.6615 11 1 1.0827 -0.5807 -6.3612 12 1 -0.0593 1.0368 -4.9614 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8894 -0.5073 3.7141 16 6 2.6836 -1.6396 3.8434 17 6 3.0197 -2.1056 5.0993 18 6 2.5578 -1.4524 6.2273 19 6 2.9215 -1.9674 7.5961 20 16 1.6710 -3.1616 8.1446 21 6 2.2991 -3.6380 9.7784 22 8 0.4370 -2.4783 8.3163 23 8 1.7230 -4.2961 7.2906 24 6 1.7626 -0.3280 6.1021 25 6 1.4276 0.1467 4.8493 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7209 -1.2493 33 1 1.6767 -1.7489 -1.2491 34 1 2.8610 -1.8832 -4.7335 35 1 3.1300 -0.7208 1.2496 36 1 1.6767 -1.7488 1.2494 37 1 0.9936 0.7580 2.3564 38 1 3.0412 -2.1526 2.9629 39 1 3.6405 -2.9834 5.2006 40 1 3.8955 -2.4547 7.5540 41 1 2.9618 -1.1350 8.2987 42 1 2.3574 -2.7562 10.4166 43 1 1.6255 -4.3675 10.2281 44 1 3.2915 -4.0761 9.6726 45 1 1.4039 0.1800 6.9852 46 1 0.8061 1.0247 4.7522 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266211386.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:19 Heat of formation + Delta-G solvation = -84.240446 kcal Electronic energy + Delta-G solvation = -24976.855750 eV Core-core repulsion = 21378.123858 eV Total energy + Delta-G solvation = -3598.731892 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.62547 -39.00758 -37.88484 -36.90705 -36.04457 -34.38944 -32.26667 -31.82848 -30.31160 -29.12354 -27.99143 -27.96381 -26.47408 -24.75764 -23.47798 -21.96560 -19.78908 -19.70630 -18.37974 -18.31268 -17.49944 -17.33568 -17.00266 -16.59413 -16.44256 -15.92582 -15.80720 -15.29413 -15.03764 -14.47906 -14.46484 -14.34659 -14.19575 -13.94832 -13.94014 -13.84414 -13.59860 -13.35900 -12.98312 -12.93804 -12.91556 -12.76316 -12.71079 -12.55658 -12.35871 -12.24551 -12.11139 -11.99490 -11.78006 -11.68761 -11.50231 -10.99558 -10.86005 -10.65082 -10.52175 -9.85462 -8.25839 -8.15551 -6.22684 -0.90853 0.53311 0.67376 1.40851 1.41360 1.51619 2.00330 2.40905 2.55028 2.82039 2.99538 3.18808 3.19515 3.70980 3.88578 3.97012 4.08575 4.13613 4.15784 4.16600 4.24959 4.38522 4.53039 4.62366 4.67157 4.71108 4.73092 4.77125 4.90471 4.94949 5.02968 5.09385 5.11593 5.15484 5.39114 5.42556 5.46744 5.47248 5.50114 5.54143 5.64240 5.78943 5.88355 5.94043 6.28478 6.41248 6.86818 6.92321 7.44666 8.96709 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.031564 B = 0.002109 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.864158 B =13274.792955 C =13598.618927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.068 0.932 7 C -0.005 4.005 8 N -0.936 5.936 9 Si 0.957 3.043 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.263 1.263 13 C 0.145 3.855 14 N -0.731 5.731 15 C 0.217 3.783 16 C -0.222 4.222 17 C -0.063 4.063 18 C -0.175 4.175 19 C -0.534 4.534 20 S 2.397 3.603 21 C -0.637 4.637 22 O -0.987 6.987 23 O -0.992 6.992 24 C -0.060 4.060 25 C -0.208 4.208 26 H 0.063 0.937 27 H 0.052 0.948 28 H 0.036 0.964 29 H 0.039 0.961 30 H 0.052 0.948 31 H 0.063 0.937 32 H -0.010 1.010 33 H -0.013 1.013 34 H 0.260 0.740 35 H 0.050 0.950 36 H 0.045 0.955 37 H 0.406 0.594 38 H 0.116 0.884 39 H 0.139 0.861 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.158 0.842 43 H 0.131 0.869 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.034 1.769 30.078 30.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.064 4.064 3 C -0.177 4.177 4 C 0.003 3.997 5 C -0.553 4.553 6 H 0.086 0.914 7 C -0.202 4.202 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.187 1.187 13 C 0.021 3.979 14 N -0.360 5.360 15 C 0.111 3.889 16 C -0.245 4.245 17 C -0.082 4.082 18 C -0.179 4.179 19 C -0.663 4.663 20 S 2.587 3.413 21 C -0.789 4.789 22 O -0.985 6.985 23 O -0.989 6.989 24 C -0.079 4.079 25 C -0.231 4.231 26 H 0.082 0.918 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.243 0.757 38 H 0.134 0.866 39 H 0.157 0.843 40 H 0.185 0.815 41 H 0.191 0.809 42 H 0.176 0.824 43 H 0.150 0.850 44 H 0.173 0.827 45 H 0.168 0.832 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.384 1.235 29.354 29.412 hybrid contribution 0.370 0.352 -1.262 1.362 sum 1.754 1.588 28.091 28.191 Atomic orbital electron populations 1.21676 0.94239 1.00767 1.01144 1.20671 0.96214 0.96236 0.93328 1.21662 0.99930 0.94920 1.01169 1.18961 0.94404 0.94164 0.92124 1.21582 1.30411 1.12015 0.91257 0.91363 1.25927 0.95740 0.95891 1.02627 1.70106 1.38715 1.24810 1.24089 0.85558 0.79081 0.78171 0.78908 1.20094 1.21447 1.18677 1.21245 0.97630 0.95190 0.83860 1.44840 1.56615 1.32736 1.01797 1.18207 0.92389 0.92487 0.85853 1.20835 1.05767 0.99368 0.98569 1.21114 0.97251 0.98499 0.91383 1.18928 1.05869 1.00080 0.93026 1.29059 1.17566 1.17139 1.02538 1.08333 0.77689 0.76269 0.79032 1.30103 1.14711 1.14137 1.19993 1.93524 1.42420 1.75521 1.86998 1.93534 1.87707 1.51140 1.66556 1.21169 0.94568 0.94505 0.97676 1.20828 1.07256 1.03912 0.91106 0.91829 0.92916 0.94481 0.94208 0.92940 0.91776 0.99201 0.99421 0.93143 0.93199 0.93671 0.75700 0.86572 0.84307 0.81518 0.80925 0.82405 0.85008 0.82697 0.83183 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.29 8.05 71.98 0.58 -3.71 16 2 C -0.06 -2.44 0.54 -52.18 -0.03 -2.46 16 3 C -0.12 -4.14 8.05 71.98 0.58 -3.56 16 4 C 0.04 2.07 4.04 29.85 0.12 2.19 16 5 C -0.51 -27.77 7.65 25.60 0.20 -27.58 16 6 H 0.07 3.50 5.68 -2.91 -0.02 3.48 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 8 N -0.94 -56.69 13.29 21.45 0.28 -56.40 16 9 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 13 C 0.15 4.94 3.80 86.38 0.33 5.27 16 14 N -0.73 -20.62 5.14 -339.39 -1.74 -22.36 16 15 C 0.22 6.02 6.65 38.22 0.25 6.27 16 16 C -0.22 -6.33 9.31 22.40 0.21 -6.12 16 17 C -0.06 -1.51 9.69 22.25 0.22 -1.29 16 18 C -0.18 -3.50 5.14 -19.84 -0.10 -3.60 16 19 C -0.53 -4.97 5.93 71.24 0.42 -4.55 16 20 S 2.40 34.11 5.34 -56.49 -0.30 33.81 16 21 C -0.64 -1.79 10.62 113.37 1.20 -0.59 16 22 O -0.99 -22.69 18.10 -127.37 -2.30 -25.00 16 23 O -0.99 -24.31 18.10 -127.37 -2.30 -26.61 16 24 C -0.06 -1.23 9.69 22.25 0.22 -1.01 16 25 C -0.21 -4.89 9.90 22.40 0.22 -4.67 16 26 H 0.06 1.82 6.86 -2.39 -0.02 1.80 16 27 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.05 1.96 6.62 -2.39 -0.02 1.94 16 31 H 0.06 1.77 6.86 -2.39 -0.02 1.76 16 32 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 33 H -0.01 -0.71 8.14 -2.39 -0.02 -0.72 16 34 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 35 H 0.05 1.75 7.96 -2.38 -0.02 1.73 16 36 H 0.05 1.63 7.94 -2.39 -0.02 1.62 16 37 H 0.41 10.12 6.18 -92.71 -0.57 9.54 16 38 H 0.12 3.44 6.73 -2.91 -0.02 3.42 16 39 H 0.14 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.17 0.52 8.08 -2.39 -0.02 0.50 16 41 H 0.17 0.29 8.08 -2.39 -0.02 0.27 16 42 H 0.16 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.13 0.42 8.14 -2.39 -0.02 0.41 16 44 H 0.15 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -80.72 382.42 0.93 -79.79 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.39 Total: 16.03 kcal Atomic # 6 Polarization: -50.11 SS G_CDS: 4.88 Total: -45.23 kcal Atomic # 7 Polarization: -77.31 SS G_CDS: -1.46 Total: -78.77 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -4.61 Total: -51.61 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: 34.11 SS G_CDS: -0.30 Total: 33.81 kcal Total: -80.72 0.93 -79.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266211386.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.446 kcal (2) G-P(sol) polarization free energy of solvation -80.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds