Wall clock time and date at job start Tue Mar 31 2020 14:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47435 * 2 1 4 4 C 1.38382 * 119.84461 * 269.72848 * 3 2 1 5 5 C 1.37930 * 120.14952 * 179.72049 * 4 3 2 6 6 C 1.39663 * 119.84689 * 0.57883 * 5 4 3 7 7 C 1.47657 * 120.15427 * 179.68207 * 6 5 4 8 8 C 1.36598 * 125.65269 * 359.73092 * 7 6 5 9 9 C 1.39800 * 107.10818 * 179.84896 * 8 7 6 10 10 C 1.37926 * 106.76689 * 0.40938 * 9 8 7 11 11 C 1.46360 * 125.96287 * 179.70599 * 10 9 8 12 12 O 1.21779 * 119.99727 * 354.25702 * 11 10 9 13 13 N 1.34771 * 119.99909 * 174.25526 * 11 10 9 14 14 C 1.36807 * 119.99906 * 185.11087 * 13 11 10 15 15 H 1.07996 * 119.99949 * 225.17601 * 14 13 11 16 16 C 1.39045 * 119.99369 * 45.17922 * 14 13 11 17 17 N 1.31369 * 120.00460 * 6.50639 * 16 14 13 18 18 Si 1.86799 * 119.99471 * 186.50998 * 16 14 13 19 19 H 1.48502 * 109.47327 * 59.99720 * 18 16 14 20 20 H 1.48501 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47358 * 299.99649 * 18 16 14 22 22 C 1.46500 * 120.00265 * 5.11515 * 13 11 10 23 23 C 1.52994 * 117.50073 * 182.45599 * 22 13 11 24 24 C 1.53005 * 117.49652 * 113.79872 * 22 13 11 25 25 O 1.34386 * 125.65045 * 180.02562 * 7 6 5 26 26 C 1.39674 * 119.69447 * 359.69615 * 6 5 4 27 27 C 1.37935 * 119.84068 * 0.02562 * 26 6 5 28 28 H 1.09000 * 109.46483 * 299.99959 * 1 2 3 29 29 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46633 * 59.99439 * 1 2 3 31 31 H 1.09003 * 109.47247 * 120.00323 * 2 1 3 32 32 H 1.09000 * 109.46483 * 240.00041 * 2 1 3 33 33 H 1.08000 * 119.92001 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.07428 * 180.27156 * 5 4 3 35 35 H 1.07993 * 126.44291 * 0.02562 * 8 7 6 36 36 H 1.07995 * 126.61336 * 180.12067 * 9 8 7 37 37 H 0.97003 * 120.00158 * 184.99765 * 17 16 14 38 38 H 1.09001 * 115.54791 * 328.13138 * 22 13 11 39 39 H 1.09009 * 117.50062 * 0.02562 * 23 22 13 40 40 H 1.09002 * 117.50017 * 145.02411 * 23 22 13 41 41 H 1.09002 * 117.49513 * 214.98325 * 24 22 13 42 42 H 1.09003 * 117.50096 * 359.97438 * 24 22 13 43 43 H 1.07996 * 120.07960 * 180.02562 * 26 6 5 44 44 H 1.07998 * 119.92016 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2674 2.0681 -1.2003 5 6 2.7218 3.3704 -1.2077 6 6 2.9562 4.0316 0.0000 7 6 3.4494 5.4234 0.0000 8 6 3.7200 6.1722 -1.1099 9 6 4.1575 7.4234 -0.6653 10 6 4.1443 7.3827 0.7133 11 6 4.5323 8.4731 1.6091 12 8 5.0074 9.4969 1.1518 13 7 4.3637 8.3442 2.9400 14 6 4.6278 9.4003 3.7685 15 1 5.1917 9.2464 4.6766 16 6 4.1701 10.6719 3.4412 17 7 3.3777 10.8388 2.4068 18 14 4.6822 12.1428 4.4725 19 1 6.1610 12.2757 4.4453 20 1 4.0647 13.3746 3.9187 21 1 4.2284 11.9476 5.8729 22 6 3.8977 7.0730 3.4996 23 6 3.6711 7.0073 5.0113 24 6 4.8708 6.2920 4.3852 25 8 3.7116 6.1615 1.0920 26 6 2.7224 3.3702 1.2077 27 6 2.2625 2.0698 1.2003 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0907 1.5538 -2.1333 34 1 2.9006 3.8760 -2.1452 35 1 3.6132 5.8579 -2.1376 36 1 4.4535 8.2588 -1.2823 37 1 3.1168 11.7326 2.1349 38 1 3.2236 6.4986 2.8642 39 1 3.8683 7.9102 5.5895 40 1 2.8481 6.3895 5.3705 41 1 4.8366 5.2038 4.3326 42 1 5.8578 6.7238 4.5511 43 1 2.9012 3.8757 2.1452 44 1 2.0817 1.5570 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266316782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:09 Heat of formation + Delta-G solvation = 40.394987 kcal Electronic energy + Delta-G solvation = -26986.401329 eV Core-core repulsion = 23257.630084 eV Total energy + Delta-G solvation = -3728.771245 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.01733 -39.34591 -38.36954 -36.10766 -34.59449 -33.04109 -32.54957 -31.13285 -30.95756 -30.56669 -27.92688 -25.41559 -24.11196 -22.98706 -22.24678 -21.68944 -21.16832 -20.99016 -20.18031 -19.63576 -17.68816 -16.73339 -16.19498 -15.69006 -15.63555 -15.46103 -14.85523 -14.58609 -14.09951 -13.92075 -13.88295 -13.63684 -13.44510 -13.27138 -12.99278 -12.84749 -12.48299 -12.39355 -12.15415 -11.97260 -11.86471 -11.42984 -11.12425 -11.07023 -11.01218 -10.95143 -10.92272 -10.73889 -10.28331 -10.01867 -9.73825 -9.61994 -9.09563 -9.03344 -8.87992 -8.39478 -7.45537 -7.16482 -6.17330 -4.02750 0.78376 1.34007 2.10606 2.93522 3.18127 3.26694 3.31500 3.32870 3.82430 4.16048 4.39303 4.54758 4.64314 4.69444 4.82694 4.84352 4.92551 5.00299 5.11272 5.24625 5.29629 5.32627 5.34879 5.42076 5.56000 5.62954 5.65218 5.73779 5.75919 5.81300 5.94099 5.96687 5.98987 6.12861 6.19270 6.22532 6.27816 6.40157 6.48936 6.49544 6.55289 6.82355 6.87240 6.92978 6.95598 7.43875 7.52290 8.15007 8.89620 9.00804 9.45259 10.10859 10.86153 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.003100 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.792168 B = 9030.298901 C = 9919.258621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.088 4.088 4 C -0.114 4.114 5 C -0.101 4.101 6 C -0.004 4.004 7 C -0.002 4.002 8 C -0.184 4.184 9 C -0.169 4.169 10 C -0.005 4.005 11 C 0.546 3.454 12 O -0.506 6.506 13 N -0.411 5.411 14 C -0.332 4.332 15 H 0.084 0.916 16 C 0.058 3.942 17 N -0.824 5.824 18 Si 0.920 3.080 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.274 1.274 22 C 0.068 3.932 23 C -0.173 4.173 24 C -0.202 4.202 25 O -0.151 6.151 26 C -0.102 4.102 27 C -0.113 4.113 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.154 0.846 37 H 0.269 0.731 38 H 0.119 0.881 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.129 0.871 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.345 -19.233 -4.269 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.088 4.088 4 C -0.132 4.132 5 C -0.119 4.119 6 C -0.004 4.004 7 C -0.053 4.053 8 C -0.203 4.203 9 C -0.190 4.190 10 C -0.059 4.059 11 C 0.334 3.666 12 O -0.384 6.384 13 N -0.130 5.130 14 C -0.459 4.459 15 H 0.102 0.898 16 C -0.153 4.153 17 N -0.458 5.458 18 Si 0.746 3.254 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.200 1.200 22 C -0.038 4.038 23 C -0.211 4.211 24 C -0.241 4.241 25 O -0.047 6.047 26 C -0.120 4.120 27 C -0.131 4.131 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.172 0.828 37 H 0.080 0.920 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.147 0.853 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.293 -18.626 -4.263 19.583 hybrid contribution 0.119 0.831 0.209 0.865 sum -4.174 -17.794 -4.053 18.721 Atomic orbital electron populations 1.21757 0.94739 1.01585 1.02392 1.20540 0.96169 0.92657 1.02773 1.19967 0.99314 0.96312 0.93184 1.20855 1.00392 0.94406 0.97581 1.21037 0.99446 0.94587 0.96829 1.17803 0.99792 0.88747 0.94063 1.20564 1.07092 0.92403 0.85286 1.21561 1.05947 0.94262 0.98571 1.21896 1.05319 0.98511 0.93252 1.23788 1.02635 0.84046 0.95429 1.16261 0.84055 0.84470 0.81831 1.90717 1.46061 1.27149 1.74469 1.42636 1.56924 1.09090 1.04309 1.18967 1.34777 0.86341 1.05826 0.89822 1.25405 0.94013 0.99458 0.96467 1.69824 1.28707 1.23403 1.23870 0.86143 0.79084 0.80701 0.79450 1.19841 1.20919 1.19984 1.22061 0.99924 0.89646 0.92135 1.23115 0.98993 1.02725 0.96251 1.23284 0.95881 0.97930 1.06969 1.84334 1.64430 1.22895 1.33035 1.21315 0.98404 0.94667 0.97659 1.20928 0.99993 0.94579 0.97619 0.92448 0.92502 0.92519 0.91057 0.91105 0.85814 0.85486 0.83539 0.82824 0.92044 0.86434 0.87444 0.89635 0.89662 0.89067 0.85325 0.85858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.90 37.16 0.37 -0.64 16 2 C -0.08 -0.62 6.06 -27.88 -0.17 -0.78 16 3 C -0.09 -0.87 5.14 -104.52 -0.54 -1.41 16 4 C -0.11 -1.15 9.68 -39.64 -0.38 -1.54 16 5 C -0.10 -1.19 9.56 -39.16 -0.37 -1.57 16 6 C 0.00 -0.06 5.87 -104.98 -0.62 -0.67 16 7 C 0.00 -0.04 7.02 -36.33 -0.25 -0.30 16 8 C -0.18 -3.09 10.21 -39.59 -0.40 -3.49 16 9 C -0.17 -3.41 10.66 -39.11 -0.42 -3.83 16 10 C -0.01 -0.12 6.87 -36.43 -0.25 -0.37 16 11 C 0.55 14.76 6.73 -13.00 -0.09 14.67 16 12 O -0.51 -15.31 14.57 5.12 0.07 -15.23 16 13 N -0.41 -10.67 2.85 -109.31 -0.31 -10.98 16 14 C -0.33 -9.03 7.92 -15.03 -0.12 -9.14 16 15 H 0.08 2.16 7.21 -52.49 -0.38 1.78 16 16 C 0.06 1.60 4.75 -17.45 -0.08 1.52 16 17 N -0.82 -24.35 11.14 55.50 0.62 -23.74 16 18 Si 0.92 21.32 29.56 -169.99 -5.03 16.30 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 22 C 0.07 1.44 5.50 -67.93 -0.37 1.07 16 23 C -0.17 -3.18 9.80 -26.70 -0.26 -3.44 16 24 C -0.20 -3.61 10.37 -26.69 -0.28 -3.89 16 25 O -0.15 -3.03 6.92 3.59 0.02 -3.00 16 26 C -0.10 -1.35 9.72 -39.16 -0.38 -1.73 16 27 C -0.11 -1.23 9.68 -39.64 -0.38 -1.62 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 32 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.13 1.29 6.96 -52.48 -0.37 0.92 16 35 H 0.15 1.91 7.23 -52.49 -0.38 1.53 16 36 H 0.15 3.01 8.06 -52.49 -0.42 2.58 16 37 H 0.27 7.60 8.32 -40.82 -0.34 7.26 16 38 H 0.12 2.43 5.34 -51.93 -0.28 2.16 16 39 H 0.11 2.12 6.72 -51.92 -0.35 1.77 16 40 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.13 1.70 7.90 -52.49 -0.41 1.29 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 370.65 15.07 5.59 5.59 Total: -1.00 -32.48 370.65 -9.98 -42.46 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -5.94 Total: 5.77 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -5.01 Total: -17.16 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.31 Total: -34.72 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.10 Total: -18.24 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.48 -9.98 -42.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266316782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.854 kcal (2) G-P(sol) polarization free energy of solvation -32.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds