Wall clock time and date at job start Tue Mar 31 2020 14:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50698 * 109.47435 * 2 1 4 4 C 1.38382 * 119.84461 * 269.72848 * 3 2 1 5 5 C 1.37930 * 120.14952 * 179.72049 * 4 3 2 6 6 C 1.39663 * 119.84689 * 0.57883 * 5 4 3 7 7 C 1.47657 * 120.15427 * 179.68207 * 6 5 4 8 8 C 1.36598 * 125.65269 * 359.73092 * 7 6 5 9 9 C 1.39800 * 107.10818 * 179.84896 * 8 7 6 10 10 C 1.37926 * 106.76689 * 0.40938 * 9 8 7 11 11 C 1.46360 * 125.96287 * 179.70599 * 10 9 8 12 12 O 1.21779 * 119.99727 * 354.25702 * 11 10 9 13 13 N 1.34771 * 119.99909 * 174.25526 * 11 10 9 14 14 C 1.36807 * 119.99906 * 185.11087 * 13 11 10 15 15 H 1.07996 * 119.99949 * 225.17601 * 14 13 11 16 16 C 1.39045 * 119.99369 * 45.17922 * 14 13 11 17 17 N 1.31369 * 120.00460 * 6.50639 * 16 14 13 18 18 Si 1.86799 * 119.99471 * 186.50998 * 16 14 13 19 19 H 1.48502 * 109.47327 * 59.99720 * 18 16 14 20 20 H 1.48501 * 109.47125 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47358 * 299.99649 * 18 16 14 22 22 C 1.46500 * 120.00265 * 5.11515 * 13 11 10 23 23 C 1.52994 * 117.50073 * 182.45599 * 22 13 11 24 24 C 1.53005 * 117.49652 * 113.79872 * 22 13 11 25 25 O 1.34386 * 125.65045 * 180.02562 * 7 6 5 26 26 C 1.39674 * 119.69447 * 359.69615 * 6 5 4 27 27 C 1.37935 * 119.84068 * 0.02562 * 26 6 5 28 28 H 1.09000 * 109.46483 * 299.99959 * 1 2 3 29 29 H 1.08995 * 109.47312 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46633 * 59.99439 * 1 2 3 31 31 H 1.09003 * 109.47247 * 120.00323 * 2 1 3 32 32 H 1.09000 * 109.46483 * 240.00041 * 2 1 3 33 33 H 1.08000 * 119.92001 * 359.97438 * 4 3 2 34 34 H 1.08007 * 120.07428 * 180.27156 * 5 4 3 35 35 H 1.07993 * 126.44291 * 0.02562 * 8 7 6 36 36 H 1.07995 * 126.61336 * 180.12067 * 9 8 7 37 37 H 0.97003 * 120.00158 * 184.99765 * 17 16 14 38 38 H 1.09001 * 115.54791 * 328.13138 * 22 13 11 39 39 H 1.09009 * 117.50062 * 0.02562 * 23 22 13 40 40 H 1.09002 * 117.50017 * 145.02411 * 23 22 13 41 41 H 1.09002 * 117.49513 * 214.98325 * 24 22 13 42 42 H 1.09003 * 117.50096 * 359.97438 * 24 22 13 43 43 H 1.07996 * 120.07960 * 180.02562 * 26 6 5 44 44 H 1.07998 * 119.92016 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 6 2.2674 2.0681 -1.2003 5 6 2.7218 3.3704 -1.2077 6 6 2.9562 4.0316 0.0000 7 6 3.4494 5.4234 0.0000 8 6 3.7200 6.1722 -1.1099 9 6 4.1575 7.4234 -0.6653 10 6 4.1443 7.3827 0.7133 11 6 4.5323 8.4731 1.6091 12 8 5.0074 9.4969 1.1518 13 7 4.3637 8.3442 2.9400 14 6 4.6278 9.4003 3.7685 15 1 5.1917 9.2464 4.6766 16 6 4.1701 10.6719 3.4412 17 7 3.3777 10.8388 2.4068 18 14 4.6822 12.1428 4.4725 19 1 6.1610 12.2757 4.4453 20 1 4.0647 13.3746 3.9187 21 1 4.2284 11.9476 5.8729 22 6 3.8977 7.0730 3.4996 23 6 3.6711 7.0073 5.0113 24 6 4.8708 6.2920 4.3852 25 8 3.7116 6.1615 1.0920 26 6 2.7224 3.3702 1.2077 27 6 2.2625 2.0698 1.2003 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 2.0907 1.5538 -2.1333 34 1 2.9006 3.8760 -2.1452 35 1 3.6132 5.8579 -2.1376 36 1 4.4535 8.2588 -1.2823 37 1 3.1168 11.7326 2.1349 38 1 3.2236 6.4986 2.8642 39 1 3.8683 7.9102 5.5895 40 1 2.8481 6.3895 5.3705 41 1 4.8366 5.2038 4.3326 42 1 5.8578 6.7238 4.5511 43 1 2.9012 3.8757 2.1452 44 1 2.0817 1.5570 2.1334 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266316782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:08 Heat of formation + Delta-G solvation = 23.679569 kcal Electronic energy + Delta-G solvation = -26987.126164 eV Core-core repulsion = 23257.630084 eV Total energy + Delta-G solvation = -3729.496080 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.52042 -40.37983 -40.07686 -37.89915 -35.41000 -34.95443 -34.01422 -32.99987 -31.88531 -31.70779 -29.24919 -27.17216 -25.21725 -24.04991 -23.61093 -23.12949 -22.56799 -22.32701 -21.46377 -21.22610 -19.36352 -18.06526 -18.00977 -17.25328 -16.83846 -16.47907 -16.30021 -16.11563 -15.73411 -15.19079 -14.95803 -14.88366 -14.60008 -14.41274 -14.23730 -14.10039 -13.94493 -13.73140 -13.66538 -13.13600 -12.98788 -12.89821 -12.77325 -12.72359 -12.31506 -12.13542 -12.11176 -11.79375 -11.75060 -11.62856 -11.29355 -11.01725 -10.86811 -10.40521 -10.31166 -9.90328 -9.15905 -8.76129 -8.22810 -6.14374 -0.36324 0.47213 0.67240 1.37318 1.44591 1.49834 1.60682 1.70764 2.27837 2.59823 2.87594 2.93868 3.03183 3.33243 3.53150 3.83322 3.89208 3.96472 3.97578 4.07449 4.13779 4.22835 4.34164 4.37926 4.47702 4.57359 4.58635 4.66930 4.71492 4.74395 4.80085 4.87494 5.00509 5.05934 5.08160 5.15107 5.18957 5.27631 5.35405 5.36774 5.41044 5.44696 5.46984 5.58976 5.69962 5.96387 6.02078 6.13623 6.87351 7.03095 7.45895 8.12876 8.80366 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.021210 B = 0.003100 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.792168 B = 9030.298901 C = 9919.258621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.076 4.076 4 C -0.115 4.115 5 C -0.095 4.095 6 C -0.042 4.042 7 C 0.020 3.980 8 C -0.189 4.189 9 C -0.158 4.158 10 C -0.060 4.060 11 C 0.536 3.464 12 O -0.561 6.561 13 N -0.426 5.426 14 C -0.348 4.348 15 H 0.090 0.910 16 C 0.003 3.997 17 N -0.868 5.868 18 Si 0.986 3.014 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.252 1.252 22 C 0.033 3.967 23 C -0.159 4.159 24 C -0.177 4.177 25 O -0.155 6.155 26 C -0.112 4.112 27 C -0.119 4.119 28 H 0.049 0.951 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.188 0.812 36 H 0.151 0.849 37 H 0.264 0.736 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.120 0.880 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.310 -23.286 -4.465 24.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.076 4.076 4 C -0.133 4.133 5 C -0.113 4.113 6 C -0.042 4.042 7 C -0.031 4.031 8 C -0.208 4.208 9 C -0.179 4.179 10 C -0.113 4.113 11 C 0.325 3.675 12 O -0.444 6.444 13 N -0.144 5.144 14 C -0.475 4.475 15 H 0.108 0.892 16 C -0.203 4.203 17 N -0.503 5.503 18 Si 0.809 3.191 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.176 1.176 22 C -0.072 4.072 23 C -0.197 4.197 24 C -0.215 4.215 25 O -0.051 6.051 26 C -0.130 4.130 27 C -0.137 4.137 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.163 0.837 35 H 0.206 0.794 36 H 0.169 0.831 37 H 0.073 0.927 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.097 0.903 43 H 0.138 0.862 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.267 -22.721 -4.412 23.738 hybrid contribution 0.340 1.690 0.180 1.733 sum -4.928 -21.031 -4.233 22.012 Atomic orbital electron populations 1.21754 0.94291 1.02490 1.01915 1.20628 0.96377 0.90905 1.04165 1.20403 0.96971 0.97466 0.92741 1.21243 0.99292 0.93726 0.99025 1.21314 0.98266 0.95238 0.96465 1.17925 1.03035 0.87490 0.95787 1.21377 1.03832 0.93270 0.84665 1.21882 1.06019 0.92440 1.00453 1.22128 1.03601 0.99805 0.92402 1.23024 1.07820 0.84936 0.95519 1.16775 0.83182 0.84893 0.82613 1.90636 1.48465 1.29564 1.75714 1.42853 1.56902 1.10401 1.04271 1.19285 1.34839 0.87321 1.06049 0.89249 1.26380 0.93946 1.02463 0.97472 1.69978 1.30812 1.23359 1.26190 0.85135 0.78321 0.76861 0.78766 1.19989 1.21063 1.17588 1.22240 1.02549 0.88657 0.93740 1.23191 1.00272 1.02593 0.93616 1.23298 0.94761 0.99465 1.03991 1.84268 1.64617 1.22099 1.34166 1.21397 0.98811 0.95745 0.97068 1.21179 0.99569 0.93717 0.99190 0.93227 0.90996 0.92738 0.90050 0.89467 0.82740 0.83741 0.79433 0.83145 0.92715 0.86243 0.89074 0.86212 0.86185 0.90329 0.86223 0.83856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.90 71.98 0.71 -0.74 16 2 C -0.08 -0.85 6.06 29.85 0.18 -0.67 16 3 C -0.08 -1.20 5.14 -19.80 -0.10 -1.30 16 4 C -0.12 -1.83 9.68 22.23 0.22 -1.61 16 5 C -0.09 -1.93 9.56 22.54 0.22 -1.71 16 6 C -0.04 -1.13 5.87 -20.10 -0.12 -1.25 16 7 C 0.02 0.68 7.02 24.38 0.17 0.85 16 8 C -0.19 -6.19 10.21 22.26 0.23 -5.96 16 9 C -0.16 -6.63 10.66 22.57 0.24 -6.39 16 10 C -0.06 -2.90 6.87 24.31 0.17 -2.74 16 11 C 0.54 30.92 6.73 86.36 0.58 31.50 16 12 O -0.56 -36.54 14.57 -4.60 -0.07 -36.61 16 13 N -0.43 -23.30 2.85 -617.95 -1.76 -25.06 16 14 C -0.35 -19.75 7.92 84.11 0.67 -19.08 16 15 H 0.09 4.78 7.21 -2.91 -0.02 4.76 16 16 C 0.00 0.20 4.75 84.96 0.40 0.60 16 17 N -0.87 -54.37 11.14 21.68 0.24 -54.12 16 18 Si 0.99 45.40 29.56 68.60 2.03 47.43 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.25 -10.54 7.11 99.48 0.71 -9.83 16 22 C 0.03 1.42 5.50 44.99 0.25 1.66 16 23 C -0.16 -5.74 9.80 30.62 0.30 -5.44 16 24 C -0.18 -6.19 10.37 30.62 0.32 -5.88 16 25 O -0.16 -6.40 6.92 -10.07 -0.07 -6.47 16 26 C -0.11 -2.77 9.72 22.54 0.22 -2.55 16 27 C -0.12 -2.23 9.68 22.23 0.22 -2.02 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.09 0.66 8.08 -2.39 -0.02 0.64 16 33 H 0.15 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.14 2.36 6.96 -2.91 -0.02 2.34 16 35 H 0.19 4.37 7.23 -2.91 -0.02 4.35 16 36 H 0.15 6.23 8.06 -2.91 -0.02 6.21 16 37 H 0.26 15.84 8.32 -92.71 -0.77 15.07 16 38 H 0.12 5.10 5.34 -2.39 -0.01 5.08 16 39 H 0.09 3.61 6.72 -2.38 -0.02 3.59 16 40 H 0.12 3.45 8.14 -2.39 -0.02 3.43 16 41 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 42 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 43 H 0.12 3.08 7.90 -2.91 -0.02 3.06 16 44 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -77.17 370.65 6.24 -70.92 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 1.01 Total: 26.64 kcal Atomic # 6 Polarization: -27.59 SS G_CDS: 4.86 Total: -22.73 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -1.52 Total: -79.19 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -0.14 Total: -43.07 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -77.17 6.24 -70.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266316782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.603 kcal (2) G-P(sol) polarization free energy of solvation -77.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds