Wall clock time and date at job start Tue Mar 31 2020 13:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38252 * 119.99895 * 2 1 4 4 C 1.38211 * 120.00012 * 180.23201 * 3 2 1 5 5 C 1.38260 * 119.99790 * 359.81239 * 4 3 2 6 6 C 1.38211 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.38206 * 119.99835 * 179.79352 * 2 1 3 8 8 S 1.76199 * 120.00326 * 359.97438 * 7 2 1 9 9 O 1.42099 * 106.40421 * 82.26622 * 8 7 2 10 10 O 1.42102 * 106.40272 * 309.34780 * 8 7 2 11 11 N 1.65602 * 107.22344 * 195.80556 * 8 7 2 12 12 C 1.46504 * 120.00273 * 84.73486 * 11 8 7 13 13 C 1.50692 * 109.47044 * 260.54093 * 12 11 8 14 14 H 1.08007 * 120.00539 * 4.79156 * 13 12 11 15 15 C 1.37885 * 119.99933 * 184.79815 * 13 12 11 16 16 N 1.31510 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00020 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47129 * 120.00066 * 17 15 13 20 20 H 1.48506 * 109.46953 * 239.99588 * 17 15 13 21 21 C 1.46501 * 119.99921 * 264.74525 * 11 8 7 22 22 C 1.53004 * 109.46579 * 264.86588 * 21 11 8 23 23 C 1.52999 * 109.47518 * 64.70997 * 22 21 11 24 24 C 1.52998 * 109.47006 * 184.71082 * 22 21 11 25 25 C 1.53004 * 109.46892 * 304.70763 * 22 21 11 26 26 H 1.09004 * 109.47310 * 274.90196 * 1 2 3 27 27 H 1.08999 * 109.47191 * 34.90622 * 1 2 3 28 28 H 1.08998 * 109.47310 * 154.90561 * 1 2 3 29 29 H 1.08001 * 120.00429 * 0.06764 * 3 2 1 30 30 H 1.08001 * 120.00517 * 179.83299 * 4 3 2 31 31 H 1.08002 * 120.00310 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.99674 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.46494 * 20.53548 * 12 11 8 34 34 H 1.08998 * 109.47168 * 140.53548 * 12 11 8 35 35 H 0.97005 * 119.99949 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47312 * 24.85978 * 21 11 8 37 37 H 1.08994 * 109.47182 * 144.86947 * 21 11 8 38 38 H 1.08997 * 109.46864 * 60.00043 * 23 22 21 39 39 H 1.09002 * 109.47117 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47033 * 299.99959 * 23 22 21 41 41 H 1.09005 * 109.47490 * 59.99929 * 24 22 21 42 42 H 1.09001 * 109.47451 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.47275 * 299.99894 * 24 22 21 44 44 H 1.09005 * 109.47185 * 65.48587 * 25 22 21 45 45 H 1.09006 * 109.47291 * 185.48831 * 25 22 21 46 46 H 1.09001 * 109.47158 * 305.48248 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1980 -1.1969 0.0043 8 16 1.3171 -2.7229 0.0105 9 8 0.9570 -2.9838 -1.3391 10 8 0.3683 -2.6342 1.0647 11 7 2.3901 -3.9068 0.4454 12 6 2.6516 -4.1741 1.8620 13 6 3.9330 -3.4959 2.2729 14 1 4.4559 -2.8600 1.5737 15 6 4.4382 -3.6871 3.5415 16 7 3.8013 -4.4611 4.3930 17 14 6.0270 -2.8470 4.0507 18 1 6.5436 -2.0370 2.9184 19 1 5.7681 -1.9624 5.2151 20 1 7.0327 -3.8741 4.4234 21 6 3.0782 -4.6868 -0.5863 22 6 2.3119 -5.9869 -0.8384 23 6 0.9340 -5.6625 -1.4189 24 6 3.0912 -6.8543 -1.8289 25 6 2.1443 -6.7440 0.4805 26 1 -0.3634 0.0878 1.0239 27 1 -0.3633 0.8428 -0.5881 28 1 -0.3634 -0.9306 -0.4358 29 1 1.6583 2.1327 0.0011 30 1 4.1204 2.1326 -0.0076 31 1 5.3517 -0.0001 -0.0100 32 1 4.1206 -2.1323 -0.0016 33 1 1.8277 -3.7885 2.4625 34 1 2.7431 -5.2490 2.0180 35 1 4.1565 -4.5954 5.2856 36 1 3.1249 -4.1079 -1.5087 37 1 4.0890 -4.9199 -0.2519 38 1 1.0534 -5.1231 -2.3585 39 1 0.3880 -6.5887 -1.5981 40 1 0.3788 -5.0445 -0.7133 41 1 4.0729 -7.0855 -1.4154 42 1 2.5456 -7.7807 -2.0082 43 1 3.2107 -6.3149 -2.7685 44 1 1.5071 -6.1681 1.1517 45 1 1.6856 -7.7138 0.2871 46 1 3.1208 -6.8898 0.9424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266997910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:53 Heat of formation + Delta-G solvation = -56.619671 kcal Electronic energy + Delta-G solvation = -27865.072973 eV Core-core repulsion = 24267.538808 eV Total energy + Delta-G solvation = -3597.534165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.04782 -38.02721 -36.51115 -35.31542 -34.17653 -32.72475 -32.21152 -30.94199 -27.79231 -26.92688 -26.83874 -26.62277 -25.00282 -22.94391 -22.33054 -21.34683 -18.88691 -18.18273 -17.27832 -16.85111 -16.42688 -15.64920 -15.51606 -15.00488 -14.58536 -14.50480 -14.07807 -13.89020 -13.73521 -13.53275 -13.06558 -12.91934 -12.65798 -12.44146 -12.20614 -12.08239 -11.97465 -11.82984 -11.58620 -11.51009 -11.32998 -11.22013 -11.18268 -11.11367 -11.03387 -10.83468 -10.79455 -10.55590 -10.19378 -10.13592 -10.03825 -9.89533 -9.60673 -9.02387 -8.53608 -8.50082 -8.00130 -6.12919 -4.18716 1.07659 1.19072 1.55683 3.21862 3.30437 3.31267 3.56578 3.77931 4.24891 4.34870 4.81945 4.96981 5.08295 5.18640 5.20911 5.22044 5.25178 5.28886 5.38451 5.52304 5.65212 5.66673 5.74020 5.88412 5.91433 5.99607 6.03678 6.07927 6.19013 6.21590 6.26901 6.27715 6.38877 6.40103 6.50104 6.56095 6.58586 6.60929 6.64309 6.80812 6.96244 7.11329 7.37925 7.42604 7.61781 7.83848 8.13091 8.84129 9.46812 10.94938 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.008242 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.349732 B = 3396.537874 C = 5509.785596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.008 3.992 3 C -0.148 4.148 4 C -0.073 4.073 5 C -0.148 4.148 6 C -0.007 4.007 7 C -0.663 4.663 8 S 2.688 3.312 9 O -0.973 6.973 10 O -0.960 6.960 11 N -0.979 5.979 12 C 0.232 3.768 13 C -0.543 4.543 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.887 5.887 17 Si 0.888 3.112 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.137 3.863 22 C -0.087 4.087 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.140 4.140 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.126 0.874 32 H 0.146 0.854 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.263 0.737 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.224 4.026 -10.820 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.007 3.993 3 C -0.167 4.167 4 C -0.091 4.091 5 C -0.167 4.167 6 C -0.026 4.026 7 C -0.747 4.747 8 S 2.777 3.223 9 O -0.963 6.963 10 O -0.951 6.951 11 N -0.818 5.818 12 C 0.111 3.889 13 C -0.582 4.582 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.716 3.284 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.209 1.209 21 C 0.011 3.989 22 C -0.089 4.089 23 C -0.192 4.192 24 C -0.194 4.194 25 C -0.197 4.197 26 H 0.113 0.887 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.163 0.837 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.066 0.934 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.081 3.867 -10.805 11.664 hybrid contribution 1.704 1.052 0.736 2.133 sum -0.378 4.920 -10.069 11.213 Atomic orbital electron populations 1.21147 0.90931 1.03000 1.04303 1.19410 0.95432 0.92094 0.92397 1.20995 0.94458 0.97228 1.03998 1.21307 0.94309 0.98085 0.95380 1.21231 1.00163 0.92646 1.02671 1.21139 0.91980 0.99690 0.89762 1.31043 1.06836 1.20307 1.16548 1.02154 0.73875 0.72870 0.73362 1.93565 1.81931 1.84467 1.36325 1.93566 1.58011 1.86682 1.56813 1.57279 1.61654 1.47375 1.15468 1.19557 0.96920 0.99695 0.72767 1.21690 1.08483 1.29636 0.98362 0.91664 1.24903 0.97214 0.95093 0.96433 1.69933 1.39038 1.37247 1.06326 0.86597 0.83540 0.79467 0.78786 1.19671 1.20962 1.20929 1.21267 0.96788 0.91170 0.89684 1.20985 0.96053 0.95862 0.96020 1.21936 0.95656 1.00215 1.01386 1.21787 0.99956 0.99109 0.98515 1.22021 1.02571 0.98709 0.96445 0.88725 0.90126 0.92206 0.85613 0.85824 0.85580 0.83653 0.93466 0.92067 0.92672 0.91281 0.89640 0.91347 0.93419 0.94046 0.92518 0.92828 0.92823 0.91380 0.93906 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.94 36.01 0.32 -1.76 16 2 C 0.01 0.14 5.88 -104.63 -0.61 -0.48 16 3 C -0.15 -2.16 9.72 -39.59 -0.38 -2.54 16 4 C -0.07 -1.02 10.05 -39.58 -0.40 -1.42 16 5 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 6 C -0.01 -0.13 8.61 -39.58 -0.34 -0.47 16 7 C -0.66 -12.67 5.83 -39.59 -0.23 -12.90 16 8 S 2.69 54.43 3.27 -107.50 -0.35 54.08 16 9 O -0.97 -19.39 13.59 -57.17 -0.78 -20.16 16 10 O -0.96 -22.02 15.21 -57.17 -0.87 -22.89 16 11 N -0.98 -19.55 1.31 -115.66 -0.15 -19.70 16 12 C 0.23 5.49 4.57 -5.20 -0.02 5.47 16 13 C -0.54 -13.61 9.16 -34.44 -0.32 -13.92 16 14 H 0.07 1.54 4.93 -52.48 -0.26 1.28 16 15 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -24.69 13.29 55.43 0.74 -23.96 16 17 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 C 0.14 2.33 4.31 -4.04 -0.02 2.31 16 22 C -0.09 -1.36 0.85 -154.51 -0.13 -1.49 16 23 C -0.13 -2.17 6.96 37.16 0.26 -1.91 16 24 C -0.14 -1.71 8.47 37.16 0.31 -1.40 16 25 C -0.14 -2.33 6.88 37.16 0.26 -2.07 16 26 H 0.09 1.40 8.14 -51.93 -0.42 0.97 16 27 H 0.08 0.92 8.12 -51.93 -0.42 0.50 16 28 H 0.06 0.97 6.11 -51.93 -0.32 0.65 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.15 2.59 5.24 -52.48 -0.27 2.32 16 33 H 0.05 1.25 6.94 -51.93 -0.36 0.89 16 34 H 0.06 1.47 4.97 -51.93 -0.26 1.21 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.07 1.07 7.46 -51.93 -0.39 0.68 16 37 H 0.09 1.42 8.11 -51.93 -0.42 1.00 16 38 H 0.07 1.10 7.45 -51.93 -0.39 0.71 16 39 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.04 0.74 5.95 -51.93 -0.31 0.43 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 1.27 6.13 -51.93 -0.32 0.96 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 1.07 7.63 -51.93 -0.40 0.68 16 LS Contribution 363.62 15.07 5.48 5.48 Total: -1.00 -30.36 363.62 -9.80 -40.16 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.05 Total: 5.27 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: -1.80 Total: -33.64 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.58 Total: -43.65 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.65 Total: -43.05 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 54.43 SS G_CDS: -0.35 Total: 54.08 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.36 -9.80 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266997910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.455 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds