Wall clock time and date at job start Tue Mar 31 2020 13:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38252 * 119.99895 * 2 1 4 4 C 1.38211 * 120.00012 * 180.23201 * 3 2 1 5 5 C 1.38260 * 119.99790 * 359.81239 * 4 3 2 6 6 C 1.38211 * 119.99891 * 359.97438 * 5 4 3 7 7 C 1.38206 * 119.99835 * 179.79352 * 2 1 3 8 8 S 1.76199 * 120.00326 * 359.97438 * 7 2 1 9 9 O 1.42099 * 106.40421 * 82.26622 * 8 7 2 10 10 O 1.42102 * 106.40272 * 309.34780 * 8 7 2 11 11 N 1.65602 * 107.22344 * 195.80556 * 8 7 2 12 12 C 1.46504 * 120.00273 * 84.73486 * 11 8 7 13 13 C 1.50692 * 109.47044 * 260.54093 * 12 11 8 14 14 H 1.08007 * 120.00539 * 4.79156 * 13 12 11 15 15 C 1.37885 * 119.99933 * 184.79815 * 13 12 11 16 16 N 1.31510 * 119.99528 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00020 * 179.97438 * 15 13 12 18 18 H 1.48493 * 109.47321 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47129 * 120.00066 * 17 15 13 20 20 H 1.48506 * 109.46953 * 239.99588 * 17 15 13 21 21 C 1.46501 * 119.99921 * 264.74525 * 11 8 7 22 22 C 1.53004 * 109.46579 * 264.86588 * 21 11 8 23 23 C 1.52999 * 109.47518 * 64.70997 * 22 21 11 24 24 C 1.52998 * 109.47006 * 184.71082 * 22 21 11 25 25 C 1.53004 * 109.46892 * 304.70763 * 22 21 11 26 26 H 1.09004 * 109.47310 * 274.90196 * 1 2 3 27 27 H 1.08999 * 109.47191 * 34.90622 * 1 2 3 28 28 H 1.08998 * 109.47310 * 154.90561 * 1 2 3 29 29 H 1.08001 * 120.00429 * 0.06764 * 3 2 1 30 30 H 1.08001 * 120.00517 * 179.83299 * 4 3 2 31 31 H 1.08002 * 120.00310 * 179.97438 * 5 4 3 32 32 H 1.08004 * 119.99674 * 180.02562 * 6 5 4 33 33 H 1.08997 * 109.46494 * 20.53548 * 12 11 8 34 34 H 1.08998 * 109.47168 * 140.53548 * 12 11 8 35 35 H 0.97005 * 119.99949 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.47312 * 24.85978 * 21 11 8 37 37 H 1.08994 * 109.47182 * 144.86947 * 21 11 8 38 38 H 1.08997 * 109.46864 * 60.00043 * 23 22 21 39 39 H 1.09002 * 109.47117 * 180.02562 * 23 22 21 40 40 H 1.09001 * 109.47033 * 299.99959 * 23 22 21 41 41 H 1.09005 * 109.47490 * 59.99929 * 24 22 21 42 42 H 1.09001 * 109.47451 * 179.97438 * 24 22 21 43 43 H 1.08997 * 109.47275 * 299.99894 * 24 22 21 44 44 H 1.09005 * 109.47185 * 65.48587 * 25 22 21 45 45 H 1.09006 * 109.47291 * 185.48831 * 25 22 21 46 46 H 1.09001 * 109.47158 * 305.48248 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 0.0000 -0.0058 6 6 3.5806 -1.1970 -0.0013 7 6 2.1980 -1.1969 0.0043 8 16 1.3171 -2.7229 0.0105 9 8 0.9570 -2.9838 -1.3391 10 8 0.3683 -2.6342 1.0647 11 7 2.3901 -3.9068 0.4454 12 6 2.6516 -4.1741 1.8620 13 6 3.9330 -3.4959 2.2729 14 1 4.4559 -2.8600 1.5737 15 6 4.4382 -3.6871 3.5415 16 7 3.8013 -4.4611 4.3930 17 14 6.0270 -2.8470 4.0507 18 1 6.5436 -2.0370 2.9184 19 1 5.7681 -1.9624 5.2151 20 1 7.0327 -3.8741 4.4234 21 6 3.0782 -4.6868 -0.5863 22 6 2.3119 -5.9869 -0.8384 23 6 0.9340 -5.6625 -1.4189 24 6 3.0912 -6.8543 -1.8289 25 6 2.1443 -6.7440 0.4805 26 1 -0.3634 0.0878 1.0239 27 1 -0.3633 0.8428 -0.5881 28 1 -0.3634 -0.9306 -0.4358 29 1 1.6583 2.1327 0.0011 30 1 4.1204 2.1326 -0.0076 31 1 5.3517 -0.0001 -0.0100 32 1 4.1206 -2.1323 -0.0016 33 1 1.8277 -3.7885 2.4625 34 1 2.7431 -5.2490 2.0180 35 1 4.1565 -4.5954 5.2856 36 1 3.1249 -4.1079 -1.5087 37 1 4.0890 -4.9199 -0.2519 38 1 1.0534 -5.1231 -2.3585 39 1 0.3880 -6.5887 -1.5981 40 1 0.3788 -5.0445 -0.7133 41 1 4.0729 -7.0855 -1.4154 42 1 2.5456 -7.7807 -2.0082 43 1 3.2107 -6.3149 -2.7685 44 1 1.5071 -6.1681 1.1517 45 1 1.6856 -7.7138 0.2871 46 1 3.1208 -6.8898 0.9424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266997910.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:52 Heat of formation + Delta-G solvation = -73.588205 kcal Electronic energy + Delta-G solvation = -27865.808784 eV Core-core repulsion = 24267.538808 eV Total energy + Delta-G solvation = -3598.269976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25493 -39.43621 -38.16208 -36.95490 -35.80738 -34.21052 -33.79784 -32.17247 -29.54609 -28.10925 -28.03857 -28.02946 -26.58047 -24.20223 -24.08885 -22.64002 -20.29615 -19.61126 -18.82182 -18.49132 -18.16739 -17.23163 -16.78212 -16.44188 -16.19719 -15.94955 -15.44774 -15.19381 -15.05393 -14.84253 -14.48692 -14.35767 -14.14858 -13.96776 -13.59182 -13.42845 -13.26145 -13.18888 -13.10012 -12.99516 -12.91162 -12.81063 -12.71672 -12.49598 -12.41876 -12.37748 -12.23269 -12.12783 -11.75287 -11.56548 -11.46211 -11.38645 -11.29347 -10.52942 -10.27516 -9.76269 -9.65023 -8.13660 -6.25569 -0.46066 -0.09188 0.34038 1.40830 1.43057 1.52978 2.00621 2.43292 2.55533 2.72625 3.18660 3.62518 3.67541 3.78576 3.87766 3.95238 4.01556 4.07156 4.20930 4.27147 4.40208 4.50849 4.55830 4.63677 4.67158 4.74521 4.83318 4.89018 4.95413 4.99957 5.01594 5.07104 5.12744 5.16362 5.17744 5.31254 5.32016 5.34013 5.39499 5.44165 5.51845 5.59230 5.62220 5.80024 5.94860 5.96277 6.15047 6.85895 7.43277 8.94404 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008586 B = 0.008242 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3260.349732 B = 3396.537874 C = 5509.785596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.015 4.015 3 C -0.144 4.144 4 C -0.063 4.063 5 C -0.156 4.156 6 C -0.031 4.031 7 C -0.689 4.689 8 S 2.693 3.307 9 O -0.977 6.977 10 O -1.000 7.000 11 N -0.979 5.979 12 C 0.249 3.751 13 C -0.542 4.542 14 H 0.080 0.920 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.949 3.051 18 H -0.254 1.254 19 H -0.289 1.289 20 H -0.280 1.280 21 C 0.129 3.871 22 C -0.087 4.087 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.136 4.136 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.038 0.962 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.007 0.993 34 H 0.053 0.947 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.012 0.988 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.035 0.965 45 H 0.064 0.936 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.636 6.032 -12.548 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.017 4.017 3 C -0.163 4.163 4 C -0.081 4.081 5 C -0.175 4.175 6 C -0.050 4.050 7 C -0.778 4.778 8 S 2.786 3.214 9 O -0.967 6.967 10 O -0.991 6.991 11 N -0.817 5.817 12 C 0.126 3.874 13 C -0.581 4.581 14 H 0.098 0.902 15 C -0.186 4.186 16 N -0.567 5.567 17 Si 0.775 3.225 18 H -0.177 1.177 19 H -0.215 1.215 20 H -0.206 1.206 21 C 0.004 3.996 22 C -0.089 4.089 23 C -0.192 4.192 24 C -0.187 4.187 25 C -0.193 4.193 26 H 0.110 0.890 27 H 0.139 0.861 28 H 0.057 0.943 29 H 0.183 0.817 30 H 0.186 0.814 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.025 0.975 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.031 0.969 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.235 5.838 -12.570 13.861 hybrid contribution 1.079 0.506 1.220 1.706 sum 0.844 6.344 -11.350 13.029 Atomic orbital electron populations 1.21263 0.90274 1.03657 1.04754 1.19814 0.96400 0.92570 0.92879 1.21492 0.95125 0.97580 1.02081 1.21862 0.94311 0.99210 0.92683 1.21618 1.01568 0.92347 1.01957 1.21222 0.91683 1.00735 0.91333 1.30754 1.07498 1.19857 1.19646 1.01671 0.73647 0.73349 0.72717 1.93538 1.82234 1.84948 1.35993 1.93506 1.60053 1.87410 1.58098 1.57087 1.61866 1.48324 1.14453 1.19100 0.95123 0.98753 0.74421 1.22071 1.08466 1.29080 0.98532 0.90227 1.25731 1.00415 0.95849 0.96652 1.70070 1.40858 1.39060 1.06703 0.85630 0.79805 0.78540 0.78557 1.17711 1.21538 1.20578 1.21549 0.96871 0.91859 0.89359 1.21017 0.96133 0.95558 0.96223 1.21942 0.95927 1.00754 1.00555 1.21742 0.99852 0.99145 0.97982 1.21946 1.01410 0.99487 0.96480 0.89007 0.86097 0.94292 0.81696 0.81392 0.83145 0.84435 0.97460 0.92926 0.92790 0.89727 0.89382 0.91210 0.91329 0.96866 0.91878 0.91314 0.91467 0.94554 0.91732 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.28 8.94 71.24 0.64 -3.64 16 2 C -0.02 -0.50 5.88 -19.87 -0.12 -0.62 16 3 C -0.14 -3.69 9.72 22.27 0.22 -3.48 16 4 C -0.06 -1.49 10.05 22.27 0.22 -1.27 16 5 C -0.16 -4.46 10.05 22.27 0.22 -4.23 16 6 C -0.03 -1.10 8.61 22.27 0.19 -0.91 16 7 C -0.69 -26.50 5.83 22.27 0.13 -26.37 16 8 S 2.69 114.09 3.27 -56.49 -0.18 113.91 16 9 O -0.98 -40.22 13.59 -128.00 -1.74 -41.96 16 10 O -1.00 -49.14 15.21 -128.00 -1.95 -51.09 16 11 N -0.98 -40.81 1.31 -519.85 -0.68 -41.50 16 12 C 0.25 12.46 4.57 85.63 0.39 12.85 16 13 C -0.54 -27.79 9.16 25.60 0.23 -27.56 16 14 H 0.08 3.77 4.93 -2.91 -0.01 3.76 16 15 C 0.01 0.69 5.46 84.66 0.46 1.15 16 16 N -0.93 -53.30 13.29 21.45 0.28 -53.02 16 17 Si 0.95 41.63 29.54 68.60 2.03 43.65 16 18 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 C 0.13 4.42 4.31 86.38 0.37 4.79 16 22 C -0.09 -2.71 0.85 -52.18 -0.04 -2.75 16 23 C -0.13 -4.34 6.96 71.98 0.50 -3.84 16 24 C -0.13 -3.00 8.47 71.98 0.61 -2.39 16 25 C -0.14 -4.63 6.88 71.98 0.50 -4.14 16 26 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.12 2.49 8.12 -2.39 -0.02 2.48 16 28 H 0.04 1.30 6.11 -2.39 -0.01 1.28 16 29 H 0.17 2.85 8.06 -2.91 -0.02 2.82 16 30 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 31 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 32 H 0.14 4.90 5.24 -2.91 -0.02 4.89 16 33 H 0.01 0.42 6.94 -2.39 -0.02 0.41 16 34 H 0.05 2.70 4.97 -2.39 -0.01 2.69 16 35 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 36 H 0.08 2.61 7.46 -2.39 -0.02 2.59 16 37 H 0.09 2.94 8.11 -2.39 -0.02 2.92 16 38 H 0.07 2.21 7.45 -2.39 -0.02 2.19 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.01 0.47 5.95 -2.39 -0.01 0.46 16 41 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.04 1.44 6.13 -2.38 -0.01 1.43 16 45 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 46 H 0.05 1.85 7.63 -2.39 -0.02 1.83 16 Total: -1.00 -68.95 363.62 3.26 -65.70 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.97 Total: 26.71 kcal Atomic # 6 Polarization: -66.93 SS G_CDS: 4.53 Total: -62.41 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -0.40 Total: -94.52 kcal Atomic # 8 Polarization: -89.36 SS G_CDS: -3.69 Total: -93.05 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Atomic # 16 Polarization: 114.09 SS G_CDS: -0.18 Total: 113.91 kcal Total: -68.95 3.26 -65.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266997910.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.889 kcal (2) G-P(sol) polarization free energy of solvation -68.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds