Wall clock time and date at job start Tue Mar 31 2020 14:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.50701 * 109.46865 * 119.99391 * 2 1 3 5 5 C 1.38366 * 119.45651 * 275.00341 * 4 2 1 6 6 C 1.38336 * 119.30835 * 180.02562 * 5 4 2 7 7 C 1.40078 * 118.28709 * 359.97438 * 6 5 4 8 8 C 1.47720 * 120.56942 * 179.97438 * 7 6 5 9 9 O 1.21475 * 119.99593 * 359.97438 * 8 7 6 10 10 O 1.34702 * 120.00512 * 179.97438 * 8 7 6 11 11 C 1.45193 * 117.00654 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47669 * 180.02562 * 11 10 8 13 13 C 1.38645 * 119.74813 * 269.72929 * 12 11 10 14 14 C 1.37621 * 120.24566 * 179.72265 * 13 12 11 15 15 C 1.40711 * 119.74360 * 0.56683 * 14 13 12 16 16 C 1.41399 * 120.24022 * 179.68732 * 15 14 13 17 17 H 1.08001 * 119.99715 * 204.41034 * 16 15 14 18 18 C 1.39946 * 120.00041 * 24.40415 * 16 15 14 19 19 N 1.30814 * 119.99993 * 17.85087 * 18 16 15 20 20 Si 1.86803 * 119.99877 * 197.84698 * 18 16 15 21 21 H 1.48503 * 109.46821 * 60.00166 * 20 18 16 22 22 H 1.48496 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47352 * 300.00379 * 20 18 16 24 24 C 1.40708 * 119.51604 * 359.70740 * 15 14 13 25 25 C 1.37620 * 119.74600 * 359.97438 * 24 15 14 26 26 C 1.39576 * 118.86748 * 359.97438 * 7 6 5 27 27 N 1.31684 * 120.56373 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47522 * 300.00561 * 1 2 3 29 29 H 1.09009 * 109.46601 * 60.00487 * 1 2 3 30 30 H 1.08999 * 109.46745 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47622 * 239.99781 * 2 1 3 32 32 H 1.08999 * 109.47017 * 299.99384 * 3 2 1 33 33 H 1.08998 * 109.47376 * 59.99350 * 3 2 1 34 34 H 1.08999 * 109.47402 * 179.97438 * 3 2 1 35 35 H 1.07995 * 120.34427 * 0.02562 * 5 4 2 36 36 H 1.07998 * 120.85945 * 179.72407 * 6 5 4 37 37 H 1.09000 * 109.47088 * 300.00316 * 11 10 8 38 38 H 1.08999 * 109.47033 * 59.99840 * 11 10 8 39 39 H 1.07994 * 119.87184 * 359.97438 * 13 12 11 40 40 H 1.08001 * 120.12435 * 180.28286 * 14 13 12 41 41 H 0.97010 * 119.99982 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.13267 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.87860 * 180.02562 * 25 24 15 44 44 H 1.08001 * 119.71550 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1600 -0.0090 2.4165 6 6 2.6219 -0.6640 3.5441 7 6 2.9436 -2.0231 3.4373 8 6 3.4417 -2.7716 4.6094 9 8 3.5758 -2.2085 5.6774 10 8 3.7472 -4.0784 4.4940 11 6 4.2315 -4.7501 5.6866 12 6 4.5198 -6.1944 5.3678 13 6 3.5229 -7.1454 5.5229 14 6 3.7733 -8.4664 5.2293 15 6 5.0503 -8.8521 4.7816 16 6 5.3210 -10.2075 4.4833 17 1 6.3346 -10.5778 4.5262 18 6 4.2754 -11.0691 4.1326 19 7 3.1275 -10.5791 3.7409 20 14 4.5191 -12.9189 4.2236 21 1 4.8508 -13.3064 5.6183 22 1 3.2707 -13.6040 3.8026 23 1 5.6298 -13.3169 3.3219 24 6 6.0560 -7.8793 4.6334 25 6 5.7813 -6.5630 4.9266 26 6 2.7855 -2.6581 2.2045 27 7 2.3419 -1.9908 1.1595 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.9018 1.0386 2.4614 36 1 2.7354 -0.1399 4.4816 37 1 5.1449 -4.2651 6.0311 38 1 3.4737 -4.6944 6.4681 39 1 2.5451 -6.8476 5.8715 40 1 2.9939 -9.2048 5.3465 41 1 2.4029 -11.1763 3.4974 42 1 7.0398 -8.1644 4.2909 43 1 6.5516 -5.8145 4.8132 44 1 3.0290 -3.7058 2.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271814083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:01 Heat of formation + Delta-G solvation = -50.075340 kcal Electronic energy + Delta-G solvation = -25508.109373 eV Core-core repulsion = 21775.415040 eV Total energy + Delta-G solvation = -3732.694333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.88532 -39.69391 -37.69268 -36.16699 -35.82007 -33.88615 -32.77318 -31.17005 -30.44373 -29.37977 -27.56895 -27.28985 -25.29418 -23.90568 -23.48680 -21.70316 -21.10064 -20.46155 -20.06668 -18.08692 -17.40291 -17.12054 -16.33499 -16.06320 -16.01263 -15.37979 -15.01833 -14.68229 -14.34522 -14.21709 -13.89222 -13.74576 -13.39390 -13.19570 -13.03600 -12.78187 -12.48440 -12.36525 -12.34967 -12.03947 -11.75195 -11.59144 -11.53055 -11.30493 -11.18363 -11.02222 -10.90134 -10.54711 -10.43584 -10.20167 -10.13788 -9.73868 -9.62281 -9.48133 -9.25285 -9.22691 -7.57965 -7.47019 -6.87763 -4.47817 0.38634 1.01346 2.39583 2.58274 2.93228 2.99711 3.01805 3.04466 3.31552 3.61370 3.84663 3.86787 4.33110 4.49110 4.63838 4.68336 4.73801 4.81976 4.84114 5.00843 5.19654 5.26973 5.42394 5.44528 5.54675 5.59164 5.59634 5.64136 5.68151 5.77236 5.85105 5.88772 5.98372 6.08094 6.23585 6.30094 6.36340 6.74002 6.86240 6.96244 7.16897 7.25194 7.50246 7.68988 7.72632 7.94297 7.96420 7.99706 8.17959 8.52476 8.77177 8.85398 10.05835 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002268 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.235562 B =12340.768722 C =13387.360093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.051 4.051 3 C -0.148 4.148 4 C 0.162 3.838 5 C -0.186 4.186 6 C -0.013 4.013 7 C -0.180 4.180 8 C 0.507 3.493 9 O -0.517 6.517 10 O -0.343 6.343 11 C 0.138 3.862 12 C -0.238 4.238 13 C -0.074 4.074 14 C -0.171 4.171 15 C 0.119 3.881 16 C -0.455 4.455 17 H 0.080 0.920 18 C 0.075 3.925 19 N -0.784 5.784 20 Si 0.911 3.089 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.264 1.264 24 C -0.230 4.230 25 C -0.063 4.063 26 C 0.167 3.833 27 N -0.489 5.489 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.284 0.716 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.734 18.326 -5.226 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.206 4.206 4 C 0.025 3.975 5 C -0.205 4.205 6 C -0.038 4.038 7 C -0.184 4.184 8 C 0.352 3.648 9 O -0.407 6.407 10 O -0.260 6.260 11 C 0.066 3.934 12 C -0.239 4.239 13 C -0.093 4.093 14 C -0.190 4.190 15 C 0.116 3.884 16 C -0.484 4.484 17 H 0.098 0.902 18 C -0.144 4.144 19 N -0.408 5.408 20 Si 0.735 3.265 21 H -0.187 1.187 22 H -0.202 1.202 23 H -0.189 1.189 24 C -0.250 4.250 25 C -0.081 4.081 26 C 0.009 3.991 27 N -0.197 5.197 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.138 0.862 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.009 17.925 -5.778 19.488 hybrid contribution 0.184 -0.448 0.964 1.079 sum -4.825 17.476 -4.814 18.758 Atomic orbital electron populations 1.21807 0.93234 1.02668 1.02239 1.20143 0.96465 0.95486 0.94965 1.21940 1.01507 0.94682 1.02462 1.21580 0.91308 0.89914 0.94743 1.21929 1.03699 1.01975 0.92921 1.21725 0.90563 0.92226 0.99307 1.20330 1.08222 0.95136 0.94673 1.20908 0.74677 0.81849 0.87407 1.90791 1.50700 1.70130 1.29126 1.86764 1.75014 1.21577 1.42615 1.21783 0.97855 0.90350 0.83407 1.18655 0.95833 0.90734 1.18727 1.20542 0.96023 0.93765 0.98981 1.21295 0.98750 0.94567 1.04409 1.17684 0.91262 0.92645 0.86792 1.19655 0.94906 0.93764 1.40085 0.90176 1.25977 0.94450 1.01795 0.92215 1.69816 1.03741 1.38094 1.29149 0.86321 0.78741 0.81466 0.79990 1.18692 1.20218 1.18871 1.20961 0.99739 0.92609 1.11684 1.20395 0.94816 0.95553 0.97331 1.23378 0.88867 1.00572 0.86256 1.67658 1.12196 1.08328 1.31553 0.92415 0.91653 0.92025 0.88795 0.91619 0.92048 0.92209 0.83848 0.83461 0.91928 0.91861 0.89308 0.86225 0.90531 0.88702 0.89281 0.80612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.18 37.16 0.34 -0.64 16 2 C -0.05 -0.41 3.23 -91.77 -0.30 -0.70 16 3 C -0.15 -0.85 8.61 37.16 0.32 -0.53 16 4 C 0.16 1.72 5.79 -82.50 -0.48 1.25 16 5 C -0.19 -1.76 9.16 -39.50 -0.36 -2.12 16 6 C -0.01 -0.14 9.72 -38.86 -0.38 -0.52 16 7 C -0.18 -2.52 5.89 -104.83 -0.62 -3.14 16 8 C 0.51 8.46 7.91 34.60 0.27 8.74 16 9 O -0.52 -9.40 16.21 -19.25 -0.31 -9.71 16 10 O -0.34 -6.32 9.48 -40.50 -0.38 -6.70 16 11 C 0.14 2.60 5.59 36.00 0.20 2.80 16 12 C -0.24 -5.20 5.54 -104.33 -0.58 -5.78 16 13 C -0.07 -1.72 9.67 -39.66 -0.38 -2.10 16 14 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 15 C 0.12 3.10 5.57 -106.83 -0.60 2.51 16 16 C -0.46 -11.74 9.05 -37.74 -0.34 -12.08 16 17 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 18 C 0.07 1.83 5.14 -17.35 -0.09 1.74 16 19 N -0.78 -19.72 10.95 55.55 0.61 -19.11 16 20 Si 0.91 18.08 29.60 -169.99 -5.03 13.05 16 21 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 22 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 24 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 25 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 26 C 0.17 2.31 10.79 -17.12 -0.18 2.13 16 27 N -0.49 -6.46 10.25 -9.12 -0.09 -6.55 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.30 6.48 -51.93 -0.34 -0.04 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.14 0.93 6.29 -52.49 -0.33 0.60 16 36 H 0.15 1.51 7.74 -52.49 -0.41 1.10 16 37 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 38 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 39 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.12 3.13 6.16 -52.49 -0.32 2.80 16 41 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 42 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.18 2.44 7.62 -52.49 -0.40 2.04 16 LS Contribution 376.47 15.07 5.67 5.67 Total: -1.00 -28.66 376.47 -9.80 -38.46 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: -5.99 Total: 5.74 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -4.27 Total: -20.85 kcal Atomic # 7 Polarization: -26.18 SS G_CDS: 0.51 Total: -25.66 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.70 Total: -16.41 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.66 -9.80 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271814083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.619 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds