Wall clock time and date at job start Tue Mar 31 2020 14:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.50701 * 109.46865 * 119.99391 * 2 1 3 5 5 C 1.38366 * 119.45651 * 275.00341 * 4 2 1 6 6 C 1.38336 * 119.30835 * 180.02562 * 5 4 2 7 7 C 1.40078 * 118.28709 * 359.97438 * 6 5 4 8 8 C 1.47720 * 120.56942 * 179.97438 * 7 6 5 9 9 O 1.21475 * 119.99593 * 359.97438 * 8 7 6 10 10 O 1.34702 * 120.00512 * 179.97438 * 8 7 6 11 11 C 1.45193 * 117.00654 * 179.97438 * 10 8 7 12 12 C 1.50692 * 109.47669 * 180.02562 * 11 10 8 13 13 C 1.38645 * 119.74813 * 269.72929 * 12 11 10 14 14 C 1.37621 * 120.24566 * 179.72265 * 13 12 11 15 15 C 1.40711 * 119.74360 * 0.56683 * 14 13 12 16 16 C 1.41399 * 120.24022 * 179.68732 * 15 14 13 17 17 H 1.08001 * 119.99715 * 204.41034 * 16 15 14 18 18 C 1.39946 * 120.00041 * 24.40415 * 16 15 14 19 19 N 1.30814 * 119.99993 * 17.85087 * 18 16 15 20 20 Si 1.86803 * 119.99877 * 197.84698 * 18 16 15 21 21 H 1.48503 * 109.46821 * 60.00166 * 20 18 16 22 22 H 1.48496 * 109.47383 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47352 * 300.00379 * 20 18 16 24 24 C 1.40708 * 119.51604 * 359.70740 * 15 14 13 25 25 C 1.37620 * 119.74600 * 359.97438 * 24 15 14 26 26 C 1.39576 * 118.86748 * 359.97438 * 7 6 5 27 27 N 1.31684 * 120.56373 * 0.02562 * 26 7 6 28 28 H 1.08998 * 109.47522 * 300.00561 * 1 2 3 29 29 H 1.09009 * 109.46601 * 60.00487 * 1 2 3 30 30 H 1.08999 * 109.46745 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47622 * 239.99781 * 2 1 3 32 32 H 1.08999 * 109.47017 * 299.99384 * 3 2 1 33 33 H 1.08998 * 109.47376 * 59.99350 * 3 2 1 34 34 H 1.08999 * 109.47402 * 179.97438 * 3 2 1 35 35 H 1.07995 * 120.34427 * 0.02562 * 5 4 2 36 36 H 1.07998 * 120.85945 * 179.72407 * 6 5 4 37 37 H 1.09000 * 109.47088 * 300.00316 * 11 10 8 38 38 H 1.08999 * 109.47033 * 59.99840 * 11 10 8 39 39 H 1.07994 * 119.87184 * 359.97438 * 13 12 11 40 40 H 1.08001 * 120.12435 * 180.28286 * 14 13 12 41 41 H 0.97010 * 119.99982 * 179.97438 * 19 18 16 42 42 H 1.08002 * 120.13267 * 179.97438 * 24 15 14 43 43 H 1.07999 * 119.87860 * 180.02562 * 25 24 15 44 44 H 1.08001 * 119.71550 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 6 2.1600 -0.0090 2.4165 6 6 2.6219 -0.6640 3.5441 7 6 2.9436 -2.0231 3.4373 8 6 3.4417 -2.7716 4.6094 9 8 3.5758 -2.2085 5.6774 10 8 3.7472 -4.0784 4.4940 11 6 4.2315 -4.7501 5.6866 12 6 4.5198 -6.1944 5.3678 13 6 3.5229 -7.1454 5.5229 14 6 3.7733 -8.4664 5.2293 15 6 5.0503 -8.8521 4.7816 16 6 5.3210 -10.2075 4.4833 17 1 6.3346 -10.5778 4.5262 18 6 4.2754 -11.0691 4.1326 19 7 3.1275 -10.5791 3.7409 20 14 4.5191 -12.9189 4.2236 21 1 4.8508 -13.3064 5.6183 22 1 3.2707 -13.6040 3.8026 23 1 5.6298 -13.3169 3.3219 24 6 6.0560 -7.8793 4.6334 25 6 5.7813 -6.5630 4.9266 26 6 2.7855 -2.6581 2.2045 27 7 2.3419 -1.9908 1.1595 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.9018 1.0386 2.4614 36 1 2.7354 -0.1399 4.4816 37 1 5.1449 -4.2651 6.0311 38 1 3.4737 -4.6944 6.4681 39 1 2.5451 -6.8476 5.8715 40 1 2.9939 -9.2048 5.3465 41 1 2.4029 -11.1763 3.4974 42 1 7.0398 -8.1644 4.2909 43 1 6.5516 -5.8145 4.8132 44 1 3.0290 -3.7058 2.1068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271814083.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:00 Heat of formation + Delta-G solvation = -62.333882 kcal Electronic energy + Delta-G solvation = -25508.640943 eV Core-core repulsion = 21775.415040 eV Total energy + Delta-G solvation = -3733.225903 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.95939 -40.91718 -39.47679 -37.58033 -36.57447 -35.70003 -33.72332 -32.71307 -31.60828 -31.23231 -28.97676 -28.04653 -26.45071 -25.34785 -24.53088 -22.97799 -22.76943 -21.85787 -21.32516 -19.31088 -19.25351 -18.32725 -17.50606 -17.23684 -17.20581 -16.99559 -16.15684 -15.77655 -15.65029 -15.52026 -15.27694 -14.87577 -14.53558 -14.23500 -14.06831 -14.02259 -13.87088 -13.80335 -13.60619 -13.52805 -12.87634 -12.86535 -12.71390 -12.61757 -12.25631 -12.16575 -12.08471 -11.97818 -11.77477 -11.70806 -11.49411 -11.30241 -11.07629 -11.05207 -10.57351 -10.16822 -9.45470 -9.35098 -8.69824 -6.41015 -0.62012 0.11025 0.70140 1.09958 1.37485 1.37915 1.43248 1.50636 1.82298 2.18662 2.63772 2.69486 3.04358 3.55764 3.58184 3.71527 3.74992 3.93173 4.05535 4.08038 4.09685 4.15205 4.25928 4.44680 4.47166 4.51338 4.53755 4.66689 4.81424 4.86539 4.89398 4.99365 4.99569 5.03554 5.10521 5.20896 5.28797 5.34932 5.36581 5.39192 5.42476 5.49573 5.63731 5.86723 6.04186 6.12895 6.30653 6.58895 6.62944 6.78955 6.87139 6.95792 8.26522 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002268 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.235562 B =12340.768722 C =13387.360093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.052 4.052 3 C -0.145 4.145 4 C 0.159 3.841 5 C -0.170 4.170 6 C -0.010 4.010 7 C -0.198 4.198 8 C 0.511 3.489 9 O -0.533 6.533 10 O -0.355 6.355 11 C 0.142 3.858 12 C -0.231 4.231 13 C -0.079 4.079 14 C -0.195 4.195 15 C 0.088 3.912 16 C -0.492 4.492 17 H 0.081 0.919 18 C 0.034 3.966 19 N -0.817 5.817 20 Si 0.985 3.015 21 H -0.259 1.259 22 H -0.267 1.267 23 H -0.258 1.258 24 C -0.245 4.245 25 C -0.064 4.064 26 C 0.158 3.842 27 N -0.512 5.512 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.183 0.817 36 H 0.162 0.838 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.291 0.709 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.193 20.772 -5.650 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.071 4.071 3 C -0.202 4.202 4 C 0.022 3.978 5 C -0.189 4.189 6 C -0.035 4.035 7 C -0.202 4.202 8 C 0.357 3.643 9 O -0.425 6.425 10 O -0.272 6.272 11 C 0.070 3.930 12 C -0.233 4.233 13 C -0.098 4.098 14 C -0.214 4.214 15 C 0.085 3.915 16 C -0.521 4.521 17 H 0.099 0.901 18 C -0.182 4.182 19 N -0.442 5.442 20 Si 0.805 3.195 21 H -0.184 1.184 22 H -0.191 1.191 23 H -0.182 1.182 24 C -0.265 4.265 25 C -0.082 4.082 26 C 0.000 4.000 27 N -0.221 5.221 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.200 0.800 36 H 0.179 0.821 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.102 0.898 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -5.466 20.394 -6.207 22.007 hybrid contribution 0.276 -0.965 1.031 1.439 sum -5.190 19.429 -5.177 20.766 Atomic orbital electron populations 1.21805 0.92319 1.01879 1.03685 1.20264 0.97084 0.96558 0.93182 1.21943 1.01221 0.93015 1.04052 1.22205 0.89975 0.89177 0.96436 1.22304 1.01698 1.03478 0.91435 1.21969 0.89891 0.91067 1.00609 1.20231 1.10227 0.96193 0.93513 1.21276 0.73972 0.80996 0.88053 1.90775 1.51691 1.70137 1.29925 1.86720 1.75443 1.22887 1.42121 1.21645 0.98942 0.88714 0.83712 1.18963 0.95310 0.92303 1.16687 1.20781 0.97257 0.93232 0.98512 1.21273 0.98572 0.95383 1.06172 1.18047 0.92103 0.93627 0.87702 1.19913 0.95604 0.94540 1.42010 0.90135 1.26842 0.93775 1.06452 0.91117 1.69870 1.04632 1.39963 1.29765 0.85208 0.79034 0.75233 0.80014 1.18368 1.19142 1.18215 1.21174 0.99853 0.93285 1.12172 1.20717 0.95745 0.95448 0.96327 1.23218 0.89685 1.00386 0.86719 1.67675 1.13057 1.09891 1.31443 0.91450 0.89762 0.93936 0.89720 0.90064 0.90503 0.92668 0.79982 0.82057 0.90506 0.91020 0.87587 0.87758 0.89844 0.87898 0.86401 0.81869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.18 71.98 0.66 -0.93 16 2 C -0.05 -0.69 3.23 -11.54 -0.04 -0.73 16 3 C -0.14 -1.15 8.61 71.98 0.62 -0.53 16 4 C 0.16 3.09 5.79 42.57 0.25 3.34 16 5 C -0.17 -2.70 9.16 22.32 0.20 -2.50 16 6 C -0.01 -0.21 9.72 22.74 0.22 0.01 16 7 C -0.20 -5.41 5.89 -20.00 -0.12 -5.52 16 8 C 0.51 16.74 7.91 70.33 0.56 17.30 16 9 O -0.53 -18.79 16.21 19.92 0.32 -18.47 16 10 O -0.36 -12.94 9.48 -56.12 -0.53 -13.47 16 11 C 0.14 5.21 5.59 71.23 0.40 5.61 16 12 C -0.23 -10.05 5.54 -19.67 -0.11 -10.16 16 13 C -0.08 -3.73 9.67 22.22 0.21 -3.51 16 14 C -0.19 -10.30 8.70 22.73 0.20 -10.10 16 15 C 0.09 4.75 5.57 -21.29 -0.12 4.63 16 16 C -0.49 -26.29 9.05 23.46 0.21 -26.08 16 17 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 18 C 0.03 1.71 5.14 85.26 0.44 2.15 16 19 N -0.82 -42.48 10.95 21.83 0.24 -42.24 16 20 Si 0.98 37.54 29.60 68.60 2.03 39.57 16 21 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 23 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 24 C -0.25 -12.06 9.80 22.73 0.22 -11.83 16 25 C -0.06 -2.83 9.67 22.22 0.21 -2.61 16 26 C 0.16 4.40 10.79 85.04 0.92 5.32 16 27 N -0.51 -13.33 10.25 -182.77 -1.87 -15.21 16 28 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.38 6.48 -2.39 -0.02 0.36 16 34 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.18 1.46 6.29 -2.91 -0.02 1.44 16 36 H 0.16 2.86 7.74 -2.91 -0.02 2.84 16 37 H 0.08 2.61 8.08 -2.39 -0.02 2.59 16 38 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 39 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.10 5.74 6.16 -2.91 -0.02 5.72 16 41 H 0.29 13.64 8.30 -92.70 -0.77 12.87 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 43 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 44 H 0.16 4.79 7.62 -2.91 -0.02 4.77 16 Total: -1.00 -63.95 376.47 6.13 -57.81 By element: Atomic # 1 Polarization: 27.15 SS G_CDS: 1.01 Total: 28.16 kcal Atomic # 6 Polarization: -41.09 SS G_CDS: 4.94 Total: -36.15 kcal Atomic # 7 Polarization: -55.82 SS G_CDS: -1.64 Total: -57.45 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.21 Total: -31.95 kcal Atomic # 14 Polarization: 37.54 SS G_CDS: 2.03 Total: 39.57 kcal Total: -63.95 6.13 -57.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271814083.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.523 kcal (2) G-P(sol) polarization free energy of solvation -63.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds