Wall clock time and date at job start Tue Mar 31 2020 14:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47600 * 2 1 4 4 C 1.53007 * 109.47231 * 59.99879 * 3 2 1 5 5 C 1.52993 * 109.47013 * 300.00146 * 3 2 1 6 6 C 1.50703 * 109.47646 * 179.97438 * 3 2 1 7 7 C 1.38234 * 120.00257 * 180.02562 * 6 3 2 8 8 C 1.38230 * 119.99864 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00326 * 0.02562 * 8 7 6 10 10 S 1.76199 * 120.00342 * 179.70391 * 9 8 7 11 11 O 1.42099 * 106.40466 * 203.54194 * 10 9 8 12 12 O 1.42098 * 106.40181 * 336.46004 * 10 9 8 13 13 N 1.65602 * 107.21888 * 89.99875 * 10 9 8 14 14 C 1.46500 * 119.99756 * 65.00258 * 13 10 9 15 15 C 1.52998 * 109.46901 * 164.99878 * 14 13 10 16 16 C 1.50692 * 109.47350 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00253 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00405 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00171 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99921 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47195 * 89.99998 * 20 18 16 22 22 H 1.48498 * 109.47282 * 210.00147 * 20 18 16 23 23 H 1.48508 * 109.47343 * 330.00387 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 25 25 C 1.38234 * 119.99499 * 0.02562 * 6 3 2 26 26 H 1.09002 * 109.47128 * 59.99588 * 1 2 3 27 27 H 1.08994 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46818 * 300.00425 * 1 2 3 29 29 H 1.08999 * 109.47292 * 239.99814 * 2 1 3 30 30 H 1.09011 * 109.46981 * 120.00133 * 2 1 3 31 31 H 1.09001 * 109.47305 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.46731 * 300.00538 * 4 3 2 33 33 H 1.09002 * 109.46630 * 60.00119 * 4 3 2 34 34 H 1.09001 * 109.47552 * 299.99484 * 5 3 2 35 35 H 1.08998 * 109.47377 * 59.99762 * 5 3 2 36 36 H 1.09008 * 109.47644 * 179.97438 * 5 3 2 37 37 H 1.08002 * 119.99744 * 359.97438 * 7 6 3 38 38 H 1.08000 * 120.00356 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99945 * 245.00458 * 13 10 9 40 40 H 1.09000 * 109.47104 * 284.99861 * 14 13 10 41 41 H 1.08996 * 109.47400 * 45.00315 * 14 13 10 42 42 H 1.09000 * 109.47228 * 299.99907 * 15 14 13 43 43 H 1.09003 * 109.47349 * 59.99837 * 15 14 13 44 44 H 0.96991 * 119.99703 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 9 8 46 46 H 1.07997 * 120.00459 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1638 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 0.0006 7 6 4.2383 2.6396 0.0013 8 6 5.6206 2.6395 0.0024 9 6 6.3118 1.4423 0.0023 10 16 8.0738 1.4422 -0.0041 11 8 8.4730 0.1914 -0.5475 12 8 8.4731 2.6908 -0.5526 13 7 8.5698 1.4455 1.5759 14 6 8.2776 0.2974 2.4377 15 6 9.1410 0.3733 3.6984 16 6 8.8401 -0.8073 4.5853 17 1 8.1066 -1.5390 4.2800 18 6 9.5011 -0.9536 5.7864 19 7 9.2387 -1.9843 6.5602 20 14 10.7692 0.3121 6.3148 21 1 10.1024 1.3844 7.0964 22 1 11.8026 -0.3438 7.1556 23 1 11.4107 0.9020 5.1123 24 6 5.6206 0.2452 0.0017 25 6 4.2382 0.2452 0.0006 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8931 3.1916 1.2491 32 1 0.4402 2.1638 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2492 36 1 1.8931 3.1915 -1.2490 37 1 3.6983 3.5749 0.0009 38 1 6.1607 3.5747 0.0025 39 1 9.0537 2.2076 1.9307 40 1 7.2241 0.3118 2.7173 41 1 8.4985 -0.6253 1.9011 42 1 10.1944 0.3588 3.4188 43 1 8.9202 1.2960 4.2351 44 1 9.7040 -2.0873 7.4049 45 1 6.1605 -0.6902 0.0012 46 1 3.6982 -0.6900 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273515825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:10 Heat of formation + Delta-G solvation = -73.811338 kcal Electronic energy + Delta-G solvation = -25583.703803 eV Core-core repulsion = 21985.424151 eV Total energy + Delta-G solvation = -3598.279652 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.24135 -37.20467 -37.06226 -35.66898 -35.53477 -32.69779 -31.79511 -31.15774 -29.69888 -29.56552 -27.62806 -25.19811 -24.57116 -23.18626 -22.20034 -20.91997 -19.55768 -19.02815 -18.08760 -17.19911 -16.80193 -16.17301 -15.87801 -15.23669 -15.07667 -14.83879 -14.25070 -14.18948 -14.15462 -13.99087 -13.87461 -13.66479 -13.49281 -12.76530 -12.64806 -12.36617 -12.30319 -12.19229 -12.11464 -11.92541 -11.85362 -11.61582 -11.60023 -11.53635 -11.34202 -11.18277 -10.99398 -10.66332 -10.63827 -10.44472 -10.06688 -9.89579 -9.35788 -9.24312 -9.12342 -9.00432 -8.61120 -6.11994 -4.11903 0.52823 0.80577 1.21749 3.15367 3.26183 3.34647 3.37195 3.47500 3.94005 4.19356 4.28794 4.38487 4.47288 4.59177 4.78550 4.85267 4.90486 5.01880 5.09882 5.15365 5.21891 5.27820 5.33737 5.35030 5.52004 5.54107 5.60909 5.63757 5.64223 5.69771 5.72209 5.78996 5.83664 5.97297 6.02541 6.03416 6.06016 6.14232 6.26911 6.34825 6.50819 6.73525 7.11851 7.21835 7.30349 7.68196 8.41800 8.90961 9.48855 11.00897 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003323 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.926356 B = 8423.129336 C = 9790.531140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.032 4.032 4 C -0.142 4.142 5 C -0.141 4.141 6 C -0.018 4.018 7 C -0.141 4.141 8 C -0.017 4.017 9 C -0.677 4.677 10 S 2.693 3.307 11 O -0.959 6.959 12 O -0.971 6.971 13 N -1.115 6.115 14 C 0.127 3.873 15 C -0.017 4.017 16 C -0.524 4.524 17 H 0.076 0.924 18 C 0.070 3.930 19 N -0.899 5.899 20 Si 0.880 3.120 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.013 4.013 25 C -0.143 4.143 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.415 0.585 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.026 0.974 43 H 0.019 0.981 44 H 0.265 0.735 45 H 0.142 0.858 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.659 9.184 -14.506 23.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.032 4.032 4 C -0.199 4.199 5 C -0.198 4.198 6 C -0.019 4.019 7 C -0.159 4.159 8 C -0.036 4.036 9 C -0.763 4.763 10 S 2.783 3.217 11 O -0.949 6.949 12 O -0.962 6.962 13 N -0.876 5.876 14 C 0.002 3.998 15 C -0.057 4.057 16 C -0.563 4.563 17 H 0.094 0.906 18 C -0.133 4.133 19 N -0.537 5.537 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.189 1.189 24 C -0.032 4.032 25 C -0.162 4.162 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.146 0.854 38 H 0.156 0.844 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.093 0.907 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.160 0.840 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.194 8.918 -15.145 23.899 hybrid contribution 0.167 0.894 0.999 1.351 sum -16.027 9.813 -14.146 23.522 Atomic orbital electron populations 1.21902 0.95556 1.01786 1.02069 1.21708 0.96196 0.95166 1.02586 1.19646 0.90159 0.96670 0.96720 1.21959 1.01216 1.00212 0.96530 1.21946 1.01243 1.00167 0.96418 1.20150 0.95090 0.93344 0.93281 1.21049 0.93985 0.97923 1.02974 1.20868 0.94576 0.96543 0.91611 1.31011 1.27495 0.99473 1.18355 1.01792 0.73680 0.73463 0.72800 1.93581 1.80492 1.44045 1.76758 1.93553 1.81642 1.44097 1.76878 1.55527 1.71671 1.29376 1.31010 1.21457 0.99976 0.85741 0.92642 1.19756 0.95644 0.98113 0.92144 1.20949 1.24350 1.08059 1.02930 0.90620 1.24991 0.96596 0.95400 0.96264 1.69900 1.42561 1.29163 1.12094 0.86778 0.81732 0.81781 0.78983 1.20255 1.21278 1.18891 1.21014 0.94734 0.96803 0.90658 1.21311 0.94064 0.98318 1.02484 0.92444 0.92673 0.92294 0.91442 0.91178 0.92325 0.91722 0.92085 0.92390 0.91710 0.92341 0.85388 0.84429 0.75031 0.92360 0.90687 0.95581 0.96279 0.92565 0.84028 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.21 37.16 0.34 -0.63 16 2 C -0.12 -0.89 3.65 -26.73 -0.10 -0.98 16 3 C -0.03 -0.25 0.63 -155.66 -0.10 -0.35 16 4 C -0.14 -1.07 7.93 37.16 0.29 -0.78 16 5 C -0.14 -0.97 7.93 37.15 0.29 -0.68 16 6 C -0.02 -0.19 4.76 -104.62 -0.50 -0.69 16 7 C -0.14 -1.50 8.71 -39.59 -0.34 -1.84 16 8 C -0.02 -0.20 9.52 -39.59 -0.38 -0.58 16 9 C -0.68 -9.30 5.95 -39.58 -0.24 -9.53 16 10 S 2.69 41.48 5.74 -107.50 -0.62 40.86 16 11 O -0.96 -17.38 16.75 -57.17 -0.96 -18.33 16 12 O -0.97 -16.23 17.28 -57.17 -0.99 -17.22 16 13 N -1.11 -17.54 6.00 -10.62 -0.06 -17.61 16 14 C 0.13 2.37 6.16 -4.04 -0.02 2.34 16 15 C -0.02 -0.39 4.18 -27.89 -0.12 -0.51 16 16 C -0.52 -14.32 9.66 -34.44 -0.33 -14.66 16 17 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 18 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 19 N -0.90 -26.98 13.96 55.43 0.77 -26.21 16 20 Si 0.88 21.06 27.47 -169.99 -4.67 16.39 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.26 -6.05 6.54 56.52 0.37 -5.68 16 24 C -0.01 -0.17 9.52 -39.58 -0.38 -0.55 16 25 C -0.14 -1.63 8.98 -39.58 -0.36 -1.98 16 26 H 0.06 0.33 6.43 -51.93 -0.33 -0.01 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.36 6.43 -51.93 -0.33 0.02 16 29 H 0.07 0.49 7.51 -51.93 -0.39 0.10 16 30 H 0.07 0.56 7.51 -51.92 -0.39 0.17 16 31 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 32 H 0.06 0.41 6.43 -51.93 -0.33 0.07 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 36 H 0.06 0.39 7.39 -51.92 -0.38 0.00 16 37 H 0.13 1.06 7.10 -52.49 -0.37 0.69 16 38 H 0.14 1.49 7.62 -52.49 -0.40 1.09 16 39 H 0.42 5.82 8.65 -34.47 -0.30 5.52 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 1.43 7.75 -51.93 -0.40 1.03 16 42 H 0.03 0.59 7.20 -51.93 -0.37 0.22 16 43 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.14 1.79 7.62 -52.49 -0.40 1.39 16 46 H 0.14 1.26 5.90 -52.49 -0.31 0.96 16 LS Contribution 374.01 15.07 5.64 5.64 Total: -1.00 -33.38 374.01 -10.02 -43.40 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -7.11 Total: 2.64 kcal Atomic # 6 Polarization: -27.53 SS G_CDS: -2.02 Total: -29.55 kcal Atomic # 7 Polarization: -44.53 SS G_CDS: 0.71 Total: -43.82 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.95 Total: -35.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Atomic # 16 Polarization: 41.48 SS G_CDS: -0.62 Total: 40.86 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.38 -10.02 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273515825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.413 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds