Wall clock time and date at job start Tue Mar 31 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47600 * 2 1 4 4 C 1.53007 * 109.47231 * 59.99879 * 3 2 1 5 5 C 1.52993 * 109.47013 * 300.00146 * 3 2 1 6 6 C 1.50703 * 109.47646 * 179.97438 * 3 2 1 7 7 C 1.38234 * 120.00257 * 180.02562 * 6 3 2 8 8 C 1.38230 * 119.99864 * 179.97438 * 7 6 3 9 9 C 1.38235 * 120.00326 * 0.02562 * 8 7 6 10 10 S 1.76199 * 120.00342 * 179.70391 * 9 8 7 11 11 O 1.42099 * 106.40466 * 203.54194 * 10 9 8 12 12 O 1.42098 * 106.40181 * 336.46004 * 10 9 8 13 13 N 1.65602 * 107.21888 * 89.99875 * 10 9 8 14 14 C 1.46500 * 119.99756 * 65.00258 * 13 10 9 15 15 C 1.52998 * 109.46901 * 164.99878 * 14 13 10 16 16 C 1.50692 * 109.47350 * 179.97438 * 15 14 13 17 17 H 1.08006 * 120.00253 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00405 * 180.02562 * 16 15 14 19 19 N 1.31521 * 120.00171 * 180.02562 * 18 16 15 20 20 Si 1.86793 * 119.99921 * 0.02562 * 18 16 15 21 21 H 1.48507 * 109.47195 * 89.99998 * 20 18 16 22 22 H 1.48498 * 109.47282 * 210.00147 * 20 18 16 23 23 H 1.48508 * 109.47343 * 330.00387 * 20 18 16 24 24 C 1.38234 * 119.99814 * 359.97438 * 9 8 7 25 25 C 1.38234 * 119.99499 * 0.02562 * 6 3 2 26 26 H 1.09002 * 109.47128 * 59.99588 * 1 2 3 27 27 H 1.08994 * 109.47202 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46818 * 300.00425 * 1 2 3 29 29 H 1.08999 * 109.47292 * 239.99814 * 2 1 3 30 30 H 1.09011 * 109.46981 * 120.00133 * 2 1 3 31 31 H 1.09001 * 109.47305 * 180.02562 * 4 3 2 32 32 H 1.08993 * 109.46731 * 300.00538 * 4 3 2 33 33 H 1.09002 * 109.46630 * 60.00119 * 4 3 2 34 34 H 1.09001 * 109.47552 * 299.99484 * 5 3 2 35 35 H 1.08998 * 109.47377 * 59.99762 * 5 3 2 36 36 H 1.09008 * 109.47644 * 179.97438 * 5 3 2 37 37 H 1.08002 * 119.99744 * 359.97438 * 7 6 3 38 38 H 1.08000 * 120.00356 * 179.97438 * 8 7 6 39 39 H 0.97000 * 119.99945 * 245.00458 * 13 10 9 40 40 H 1.09000 * 109.47104 * 284.99861 * 14 13 10 41 41 H 1.08996 * 109.47400 * 45.00315 * 14 13 10 42 42 H 1.09000 * 109.47228 * 299.99907 * 15 14 13 43 43 H 1.09003 * 109.47349 * 59.99837 * 15 14 13 44 44 H 0.96991 * 119.99703 * 179.97438 * 19 18 16 45 45 H 1.08001 * 120.00299 * 179.97438 * 24 9 8 46 46 H 1.07997 * 120.00459 * 359.97438 * 25 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1638 1.2493 5 6 1.5301 2.1637 -1.2492 6 6 3.5471 1.4424 0.0006 7 6 4.2383 2.6396 0.0013 8 6 5.6206 2.6395 0.0024 9 6 6.3118 1.4423 0.0023 10 16 8.0738 1.4422 -0.0041 11 8 8.4730 0.1914 -0.5475 12 8 8.4731 2.6908 -0.5526 13 7 8.5698 1.4455 1.5759 14 6 8.2776 0.2974 2.4377 15 6 9.1410 0.3733 3.6984 16 6 8.8401 -0.8073 4.5853 17 1 8.1066 -1.5390 4.2800 18 6 9.5011 -0.9536 5.7864 19 7 9.2387 -1.9843 6.5602 20 14 10.7692 0.3121 6.3148 21 1 10.1024 1.3844 7.0964 22 1 11.8026 -0.3438 7.1556 23 1 11.4107 0.9020 5.1123 24 6 5.6206 0.2452 0.0017 25 6 4.2382 0.2452 0.0006 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.8931 3.1916 1.2491 32 1 0.4402 2.1638 1.2492 33 1 1.8934 1.6499 2.1392 34 1 1.8934 1.6499 -2.1392 35 1 0.4401 2.1637 -1.2492 36 1 1.8931 3.1915 -1.2490 37 1 3.6983 3.5749 0.0009 38 1 6.1607 3.5747 0.0025 39 1 9.0537 2.2076 1.9307 40 1 7.2241 0.3118 2.7173 41 1 8.4985 -0.6253 1.9011 42 1 10.1944 0.3588 3.4188 43 1 8.9202 1.2960 4.2351 44 1 9.7040 -2.0873 7.4049 45 1 6.1605 -0.6902 0.0012 46 1 3.6982 -0.6900 0.0005 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273515825.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:09 Heat of formation + Delta-G solvation = -95.537071 kcal Electronic energy + Delta-G solvation = -25584.645902 eV Core-core repulsion = 21985.424151 eV Total energy + Delta-G solvation = -3599.221750 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.04124 -38.38799 -37.94668 -37.09309 -36.98880 -34.71079 -32.56055 -32.02862 -31.51936 -30.26087 -28.17350 -26.41319 -25.88050 -24.07096 -23.03073 -22.68615 -20.70473 -19.81251 -19.31119 -18.81580 -18.37818 -17.19585 -16.89973 -16.30852 -16.24621 -15.77719 -15.65618 -15.61943 -15.47017 -14.80790 -14.63326 -14.53447 -14.51126 -14.32597 -13.60505 -13.56295 -13.42356 -13.30239 -13.22435 -13.10032 -12.95802 -12.88472 -12.73093 -12.42572 -12.29241 -12.10510 -12.03955 -11.80741 -11.79934 -11.55625 -11.47029 -11.44498 -11.26748 -10.76942 -10.41011 -10.13313 -10.03642 -8.28079 -6.33233 -0.65005 -0.20812 0.30308 1.38621 1.41440 1.52254 1.97942 2.37666 2.45075 2.76291 3.07632 3.28942 3.50026 3.63107 3.91893 3.98948 4.00900 4.15894 4.26268 4.30991 4.40677 4.47104 4.49633 4.58582 4.66471 4.67925 4.79181 4.82787 4.85357 4.86826 4.95928 5.01053 5.06398 5.09454 5.15259 5.16520 5.23580 5.27802 5.36340 5.44938 5.45158 5.48241 5.60913 5.62197 5.84950 6.07321 6.27297 6.74457 7.31197 8.88063 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.003323 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.926356 B = 8423.129336 C = 9790.531140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.030 4.030 4 C -0.142 4.142 5 C -0.139 4.139 6 C -0.016 4.016 7 C -0.139 4.139 8 C -0.026 4.026 9 C -0.687 4.687 10 S 2.710 3.290 11 O -0.991 6.991 12 O -0.983 6.983 13 N -1.110 6.110 14 C 0.137 3.863 15 C -0.017 4.017 16 C -0.533 4.533 17 H 0.040 0.960 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.948 3.052 21 H -0.264 1.264 22 H -0.288 1.288 23 H -0.244 1.244 24 C -0.033 4.033 25 C -0.150 4.150 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.156 0.844 38 H 0.151 0.849 39 H 0.425 0.575 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.029 0.971 43 H 0.035 0.965 44 H 0.267 0.733 45 H 0.137 0.863 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 11.626 -15.085 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.030 4.030 4 C -0.199 4.199 5 C -0.196 4.196 6 C -0.016 4.016 7 C -0.158 4.158 8 C -0.046 4.046 9 C -0.776 4.776 10 S 2.803 3.197 11 O -0.981 6.981 12 O -0.973 6.973 13 N -0.871 5.871 14 C 0.012 3.988 15 C -0.056 4.056 16 C -0.572 4.572 17 H 0.059 0.941 18 C -0.190 4.190 19 N -0.588 5.588 20 Si 0.772 3.228 21 H -0.189 1.189 22 H -0.214 1.214 23 H -0.168 1.168 24 C -0.052 4.052 25 C -0.168 4.168 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.155 0.845 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -17.320 11.379 -15.742 26.024 hybrid contribution 0.373 0.081 1.128 1.191 sum -16.947 11.459 -14.614 25.141 Atomic orbital electron populations 1.21886 0.94426 1.02118 1.02633 1.21719 0.97201 0.94812 1.02137 1.19701 0.88353 0.97270 0.97661 1.21971 1.02207 1.00194 0.95521 1.21951 1.02199 1.00151 0.95341 1.20532 0.96643 0.92907 0.91504 1.21387 0.93468 0.99194 1.01750 1.21139 0.95535 0.96388 0.91503 1.30626 1.25784 1.00511 1.20707 1.01017 0.74174 0.72387 0.72097 1.93536 1.81766 1.45452 1.77368 1.93529 1.82503 1.44363 1.76939 1.55310 1.72350 1.28842 1.30647 1.21127 0.99707 0.86483 0.91513 1.19693 0.96402 0.96570 0.92956 1.21304 1.23236 1.08876 1.03763 0.94147 1.25961 0.99048 0.97627 0.96397 1.70054 1.44356 1.31582 1.12848 0.85690 0.78824 0.79113 0.79221 1.18920 1.21368 1.16768 1.21132 0.95755 0.96588 0.91758 1.21555 0.93455 0.99680 1.02135 0.91568 0.92559 0.91974 0.91513 0.92090 0.91745 0.90215 0.93422 0.92880 0.90233 0.91773 0.82626 0.83153 0.73927 0.91596 0.91648 0.95307 0.94647 0.92450 0.84539 0.83213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.21 71.98 0.66 -0.92 16 2 C -0.12 -1.60 3.65 30.59 0.11 -1.49 16 3 C -0.03 -0.41 0.63 -52.93 -0.03 -0.44 16 4 C -0.14 -1.80 7.93 71.98 0.57 -1.23 16 5 C -0.14 -1.53 7.93 71.98 0.57 -0.96 16 6 C -0.02 -0.30 4.76 -19.87 -0.09 -0.39 16 7 C -0.14 -2.65 8.71 22.27 0.19 -2.45 16 8 C -0.03 -0.60 9.52 22.27 0.21 -0.39 16 9 C -0.69 -18.50 5.95 22.27 0.13 -18.36 16 10 S 2.71 82.69 5.74 -56.49 -0.32 82.36 16 11 O -0.99 -36.47 16.75 -128.00 -2.14 -38.61 16 12 O -0.98 -31.98 17.28 -128.00 -2.21 -34.19 16 13 N -1.11 -33.98 6.00 -187.50 -1.12 -35.10 16 14 C 0.14 5.12 6.16 86.38 0.53 5.65 16 15 C -0.02 -0.76 4.18 29.84 0.12 -0.63 16 16 C -0.53 -29.59 9.66 25.60 0.25 -29.34 16 17 H 0.04 2.45 7.99 -2.91 -0.02 2.42 16 18 C 0.01 0.40 5.47 84.65 0.46 0.86 16 19 N -0.95 -58.26 13.96 21.45 0.30 -57.96 16 20 Si 0.95 42.81 27.47 68.60 1.88 44.70 16 21 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 22 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 24 C -0.03 -0.87 9.52 22.27 0.21 -0.66 16 25 C -0.15 -3.29 8.98 22.27 0.20 -3.09 16 26 H 0.07 0.57 6.43 -2.39 -0.02 0.56 16 27 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.60 6.43 -2.39 -0.02 0.59 16 29 H 0.07 0.89 7.51 -2.39 -0.02 0.87 16 30 H 0.06 0.91 7.51 -2.38 -0.02 0.90 16 31 H 0.06 0.74 7.39 -2.39 -0.02 0.72 16 32 H 0.08 0.78 6.43 -2.39 -0.02 0.76 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.65 6.43 -2.39 -0.02 0.64 16 36 H 0.06 0.64 7.39 -2.38 -0.02 0.62 16 37 H 0.16 2.04 7.10 -2.91 -0.02 2.02 16 38 H 0.15 2.97 7.62 -2.91 -0.02 2.94 16 39 H 0.42 11.22 8.65 -96.74 -0.84 10.38 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.07 2.55 7.75 -2.39 -0.02 2.53 16 42 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 43 H 0.04 1.45 7.57 -2.39 -0.02 1.44 16 44 H 0.27 15.30 8.31 -92.72 -0.77 14.53 16 45 H 0.14 3.61 7.62 -2.91 -0.02 3.59 16 46 H 0.15 2.73 5.90 -2.91 -0.02 2.71 16 Total: -1.00 -71.94 374.01 0.57 -71.37 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: 0.09 Total: 21.28 kcal Atomic # 6 Polarization: -57.96 SS G_CDS: 4.11 Total: -53.85 kcal Atomic # 7 Polarization: -92.23 SS G_CDS: -0.83 Total: -93.06 kcal Atomic # 8 Polarization: -68.45 SS G_CDS: -4.36 Total: -72.80 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.88 Total: 44.70 kcal Atomic # 16 Polarization: 82.69 SS G_CDS: -0.32 Total: 82.36 kcal Total: -71.94 0.57 -71.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273515825.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.172 kcal (2) G-P(sol) polarization free energy of solvation -71.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds