Wall clock time and date at job start Tue Mar 31 2020 15:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.53002 * 109.46708 * 240.00619 * 2 1 3 5 5 C 1.52999 * 109.47538 * 120.00313 * 2 1 3 6 6 S 1.81395 * 109.46986 * 59.99873 * 5 2 1 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 2 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 2 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 2 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46667 * 90.00608 * 17 15 13 19 19 H 1.48498 * 109.47192 * 209.99952 * 17 15 13 20 20 H 1.48492 * 109.47180 * 330.00410 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.09004 * 109.47056 * 299.99524 * 1 2 3 28 28 H 1.08995 * 109.47291 * 60.00258 * 1 2 3 29 29 H 1.08996 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46858 * 300.00488 * 3 2 1 32 32 H 1.09003 * 109.47218 * 59.99978 * 3 2 1 33 33 H 1.09003 * 109.46921 * 299.98962 * 4 2 1 34 34 H 1.08991 * 109.47533 * 59.99785 * 4 2 1 35 35 H 1.09005 * 109.46766 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46593 * 299.99948 * 5 2 1 37 37 H 1.08994 * 109.46870 * 180.02562 * 5 2 1 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0401 -0.7213 1.2492 6 16 1.4355 -2.4315 1.2491 7 8 0.0281 -2.4629 1.4430 8 8 2.0481 -3.1769 0.2059 9 7 2.0532 -3.0882 2.6381 10 6 1.6235 -2.5795 3.9430 11 1 1.2812 -1.5501 3.8369 12 6 2.7988 -2.6278 4.9214 13 6 3.8762 -1.6809 4.4596 14 1 3.7366 -1.1022 3.5585 15 6 5.0399 -1.5526 5.1879 16 7 5.2098 -2.2570 6.2854 17 14 6.3759 -0.3794 4.6149 18 1 6.1474 0.9607 5.2126 19 1 7.7021 -0.8925 5.0426 20 1 6.3400 -0.2736 3.1342 21 6 0.4972 -3.4317 4.4684 22 6 0.5307 -4.8032 4.2981 23 6 -0.5004 -5.5853 4.7839 24 6 -1.5695 -4.9953 5.4318 25 6 -1.6056 -3.6234 5.5974 26 6 -0.5724 -2.8416 5.1154 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7207 -1.2496 36 1 1.6768 -0.2074 2.1392 37 1 3.1301 -0.7208 1.2493 38 1 2.6996 -3.8097 2.5878 39 1 2.4576 -2.3336 5.9140 40 1 3.1979 -3.6414 4.9601 41 1 6.0286 -2.1671 6.7976 42 1 1.3643 -5.2639 3.7890 43 1 -0.4720 -6.6572 4.6549 44 1 -2.3763 -5.6061 5.8089 45 1 -2.4410 -3.1623 6.1031 46 1 -0.6006 -1.7698 5.2448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282070896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:01 Heat of formation + Delta-G solvation = -70.523485 kcal Electronic energy + Delta-G solvation = -26979.982871 eV Core-core repulsion = 23381.845791 eV Total energy + Delta-G solvation = -3598.137080 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.02383 -37.64658 -36.75478 -35.76041 -35.54360 -32.72777 -30.68943 -30.30858 -28.64107 -27.86702 -27.32868 -27.31200 -24.83711 -22.29514 -21.95915 -20.25190 -19.62023 -18.69124 -17.46240 -16.89693 -16.21416 -15.86849 -15.80304 -14.92751 -14.76588 -14.73438 -14.45241 -14.28853 -13.72951 -13.65145 -13.16537 -13.01796 -12.90387 -12.66839 -12.39336 -12.29843 -12.12569 -12.06563 -11.82221 -11.65068 -11.49605 -11.22061 -11.19430 -11.16621 -10.97893 -10.86692 -10.78827 -10.78117 -10.66734 -10.49346 -10.17536 -9.86939 -9.36170 -8.83837 -8.52848 -8.47048 -8.17276 -6.14533 -4.18571 0.66519 1.80916 1.84229 3.17075 3.21184 3.29365 3.29443 4.03801 4.23714 4.33538 4.46109 4.50703 4.79223 4.79630 5.21760 5.25042 5.26463 5.27666 5.33117 5.39549 5.52810 5.55964 5.60165 5.64374 5.71451 5.74546 5.81916 5.88555 5.92730 5.94463 6.06318 6.11747 6.19918 6.27483 6.28594 6.35714 6.48311 6.56779 6.86223 6.88627 7.11167 7.39354 7.43481 7.52258 7.66720 7.81571 8.18955 8.85543 9.46034 10.96057 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007607 B = 0.007159 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3680.078052 B = 3910.033284 C = 6648.479208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.052 4.052 3 C -0.133 4.133 4 C -0.176 4.176 5 C -0.622 4.622 6 S 2.609 3.391 7 O -0.957 6.957 8 O -0.970 6.970 9 N -1.095 6.095 10 C 0.195 3.805 11 H 0.078 0.922 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.887 3.113 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.273 1.273 21 C -0.073 4.073 22 C -0.102 4.102 23 C -0.125 4.125 24 C -0.133 4.133 25 C -0.122 4.122 26 C -0.111 4.111 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.417 0.583 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.262 0.738 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 1.894 -8.062 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.054 4.054 3 C -0.192 4.192 4 C -0.233 4.233 5 C -0.751 4.751 6 S 2.702 3.298 7 O -0.947 6.947 8 O -0.960 6.960 9 N -0.853 5.853 10 C 0.088 3.912 11 H 0.096 0.904 12 C -0.013 4.013 13 C -0.561 4.561 14 H 0.075 0.925 15 C -0.140 4.140 16 N -0.527 5.527 17 Si 0.714 3.286 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.075 4.075 22 C -0.121 4.121 23 C -0.143 4.143 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.129 4.129 27 H 0.087 0.913 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.252 0.748 39 H 0.051 0.949 40 H 0.047 0.953 41 H 0.072 0.928 42 H 0.136 0.864 43 H 0.133 0.867 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.188 1.553 -8.532 13.379 hybrid contribution 1.623 0.911 0.253 1.878 sum -8.565 2.464 -8.279 12.164 Atomic orbital electron populations 1.22369 0.93592 1.04150 1.03118 1.20243 0.95936 0.97007 0.92214 1.21826 1.01396 0.93986 1.01957 1.22371 1.02659 1.01302 0.96962 1.30737 1.13457 1.24730 1.06183 1.04916 0.74960 0.76930 0.72997 1.93583 1.29438 1.86444 1.85198 1.93548 1.78311 1.68785 1.55362 1.55337 1.60262 1.49850 1.19873 1.19978 0.93789 0.93803 0.83612 0.90444 1.19412 0.90127 0.98466 0.93333 1.21090 1.01263 1.24087 1.09662 0.92496 1.24973 0.98320 0.95834 0.94922 1.69949 1.26813 1.40401 1.15559 0.86679 0.81571 0.81243 0.79059 1.20605 1.21135 1.19818 1.20477 0.95396 0.94741 0.96924 1.20915 0.98351 0.93430 0.99390 1.21062 0.94679 0.99365 0.99154 1.20997 0.98502 0.94961 1.00677 1.21012 0.98544 0.93966 1.00518 1.20967 0.93602 0.99780 0.98578 0.91330 0.91498 0.90870 0.92188 0.92321 0.92143 0.90975 0.91448 0.91322 0.84706 0.84377 0.74766 0.94854 0.95286 0.92794 0.86357 0.86661 0.86830 0.86605 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.13 8.00 37.16 0.30 -1.83 16 2 C -0.05 -0.66 0.79 -154.51 -0.12 -0.78 16 3 C -0.13 -1.46 8.47 37.16 0.31 -1.14 16 4 C -0.18 -2.19 8.00 37.16 0.30 -1.90 16 5 C -0.62 -8.89 4.92 37.16 0.18 -8.70 16 6 S 2.61 43.17 4.42 -107.50 -0.47 42.70 16 7 O -0.96 -17.41 15.39 -57.54 -0.89 -18.29 16 8 O -0.97 -17.76 15.70 -57.54 -0.90 -18.66 16 9 N -1.10 -19.12 4.36 -5.88 -0.03 -19.15 16 10 C 0.20 3.65 2.21 -69.08 -0.15 3.50 16 11 H 0.08 1.36 7.01 -51.93 -0.36 0.99 16 12 C 0.02 0.57 4.55 -27.89 -0.13 0.44 16 13 C -0.52 -12.91 8.84 -34.44 -0.30 -13.22 16 14 H 0.06 1.31 7.70 -52.49 -0.40 0.90 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 17 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 C -0.07 -1.33 4.91 -104.63 -0.51 -1.84 16 22 C -0.10 -1.77 9.33 -39.58 -0.37 -2.13 16 23 C -0.12 -1.90 10.05 -39.58 -0.40 -2.30 16 24 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 25 C -0.12 -1.81 10.05 -39.58 -0.40 -2.20 16 26 C -0.11 -1.84 9.67 -39.58 -0.38 -2.22 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 1.00 5.47 -51.93 -0.28 0.72 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 1.01 5.46 -51.93 -0.28 0.72 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.13 1.81 7.44 -51.92 -0.39 1.42 16 37 H 0.14 1.96 8.14 -51.93 -0.42 1.54 16 38 H 0.42 7.05 8.59 -34.47 -0.30 6.75 16 39 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.12 1.93 7.55 -52.49 -0.40 1.53 16 43 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 44 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.78 8.04 -52.49 -0.42 1.35 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -30.97 380.48 -10.48 -41.45 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -7.47 Total: 10.30 kcal Atomic # 6 Polarization: -32.95 SS G_CDS: -2.17 Total: -35.12 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.71 Total: -43.25 kcal Atomic # 8 Polarization: -35.17 SS G_CDS: -1.79 Total: -36.96 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Atomic # 16 Polarization: 43.17 SS G_CDS: -0.47 Total: 42.70 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.97 -10.48 -41.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282070896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.071 kcal (2) G-P(sol) polarization free energy of solvation -30.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds