Wall clock time and date at job start Tue Mar 31 2020 15:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47034 * 2 1 4 4 C 1.53002 * 109.46708 * 240.00619 * 2 1 3 5 5 C 1.52999 * 109.47538 * 120.00313 * 2 1 3 6 6 S 1.81395 * 109.46986 * 59.99873 * 5 2 1 7 7 O 1.42105 * 110.54530 * 291.62628 * 6 5 2 8 8 O 1.42101 * 110.54333 * 68.37799 * 6 5 2 9 9 N 1.65599 * 104.44748 * 180.02562 * 6 5 2 10 10 C 1.46496 * 120.00146 * 65.00260 * 9 6 5 11 11 H 1.09003 * 109.47010 * 334.99738 * 10 9 6 12 12 C 1.53004 * 109.47009 * 215.00238 * 10 9 6 13 13 C 1.50691 * 109.47368 * 64.99822 * 12 10 9 14 14 H 1.07995 * 120.00202 * 0.02562 * 13 12 10 15 15 C 1.37879 * 120.00160 * 179.97438 * 13 12 10 16 16 N 1.31516 * 119.99716 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 120.00137 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46667 * 90.00608 * 17 15 13 19 19 H 1.48498 * 109.47192 * 209.99952 * 17 15 13 20 20 H 1.48492 * 109.47180 * 330.00410 * 17 15 13 21 21 C 1.50698 * 109.47639 * 95.00059 * 10 9 6 22 22 C 1.38236 * 119.99751 * 39.72138 * 21 10 9 23 23 C 1.38239 * 119.99569 * 179.78997 * 22 21 10 24 24 C 1.38230 * 120.00538 * 0.44823 * 23 22 21 25 25 C 1.38239 * 119.99702 * 359.80702 * 24 23 22 26 26 C 1.38230 * 120.00167 * 220.00585 * 21 10 9 27 27 H 1.09004 * 109.47056 * 299.99524 * 1 2 3 28 28 H 1.08995 * 109.47291 * 60.00258 * 1 2 3 29 29 H 1.08996 * 109.46772 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47220 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46858 * 300.00488 * 3 2 1 32 32 H 1.09003 * 109.47218 * 59.99978 * 3 2 1 33 33 H 1.09003 * 109.46921 * 299.98962 * 4 2 1 34 34 H 1.08991 * 109.47533 * 59.99785 * 4 2 1 35 35 H 1.09005 * 109.46766 * 179.97438 * 4 2 1 36 36 H 1.09003 * 109.46593 * 299.99948 * 5 2 1 37 37 H 1.08994 * 109.46870 * 180.02562 * 5 2 1 38 38 H 0.97001 * 120.00004 * 244.99733 * 9 6 5 39 39 H 1.09003 * 109.46966 * 184.99744 * 12 10 9 40 40 H 1.09001 * 109.47117 * 304.99468 * 12 10 9 41 41 H 0.97001 * 119.99681 * 179.97438 * 16 15 13 42 42 H 1.07998 * 119.99990 * 0.02562 * 22 21 10 43 43 H 1.08004 * 119.99737 * 180.27645 * 23 22 21 44 44 H 1.07990 * 120.00312 * 179.83195 * 24 23 22 45 45 H 1.08000 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.07997 * 120.00149 * 359.96952 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0401 -0.7213 1.2492 6 16 1.4355 -2.4315 1.2491 7 8 0.0281 -2.4629 1.4430 8 8 2.0481 -3.1769 0.2059 9 7 2.0532 -3.0882 2.6381 10 6 1.6235 -2.5795 3.9430 11 1 1.2812 -1.5501 3.8369 12 6 2.7988 -2.6278 4.9214 13 6 3.8762 -1.6809 4.4596 14 1 3.7366 -1.1022 3.5585 15 6 5.0399 -1.5526 5.1879 16 7 5.2098 -2.2570 6.2854 17 14 6.3759 -0.3794 4.6149 18 1 6.1474 0.9607 5.2126 19 1 7.7021 -0.8925 5.0426 20 1 6.3400 -0.2736 3.1342 21 6 0.4972 -3.4317 4.4684 22 6 0.5307 -4.8032 4.2981 23 6 -0.5004 -5.5853 4.7839 24 6 -1.5695 -4.9953 5.4318 25 6 -1.6056 -3.6234 5.5974 26 6 -0.5724 -2.8416 5.1154 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7207 -1.2496 36 1 1.6768 -0.2074 2.1392 37 1 3.1301 -0.7208 1.2493 38 1 2.6996 -3.8097 2.5878 39 1 2.4576 -2.3336 5.9140 40 1 3.1979 -3.6414 4.9601 41 1 6.0286 -2.1671 6.7976 42 1 1.3643 -5.2639 3.7890 43 1 -0.4720 -6.6572 4.6549 44 1 -2.3763 -5.6061 5.8089 45 1 -2.4410 -3.1623 6.1031 46 1 -0.6006 -1.7698 5.2448 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282070896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:00 Heat of formation + Delta-G solvation = -88.691354 kcal Electronic energy + Delta-G solvation = -26980.770689 eV Core-core repulsion = 23381.845791 eV Total energy + Delta-G solvation = -3598.924898 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29801 -38.63867 -38.13587 -37.21661 -36.92154 -34.63877 -31.97222 -31.54622 -30.37040 -28.97490 -28.25758 -28.21173 -26.52437 -23.78593 -23.31118 -21.64772 -20.77131 -19.88884 -18.88792 -18.42280 -17.80086 -17.16637 -17.10490 -16.48378 -16.14646 -16.00959 -15.62722 -15.39312 -15.00745 -14.75009 -14.53942 -14.25318 -14.17170 -14.13413 -13.91255 -13.54917 -13.22314 -13.17650 -13.06389 -12.99158 -12.87251 -12.74059 -12.58026 -12.40878 -12.37576 -12.31785 -12.08931 -11.92847 -11.85668 -11.77509 -11.67875 -11.23813 -11.18829 -10.54279 -10.26937 -9.70392 -9.47192 -8.14963 -6.24009 -0.63994 0.56789 0.61494 1.42076 1.43915 1.52074 1.82918 2.42580 2.77500 3.00819 3.20402 3.24757 3.44177 3.70333 3.84277 3.98282 4.01092 4.19240 4.26532 4.29322 4.32362 4.36798 4.53330 4.66080 4.67867 4.72675 4.79482 4.82056 4.83740 4.91843 4.92657 4.99378 5.10627 5.20066 5.24266 5.25809 5.34453 5.39096 5.48751 5.59827 5.65585 5.69162 5.83004 5.92725 6.15827 6.21921 6.25896 6.90150 7.44232 8.96359 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.007607 B = 0.007159 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3680.078052 B = 3910.033284 C = 6648.479208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.054 4.054 3 C -0.133 4.133 4 C -0.182 4.182 5 C -0.613 4.613 6 S 2.613 3.387 7 O -0.976 6.976 8 O -0.991 6.991 9 N -1.100 6.100 10 C 0.207 3.793 11 H 0.088 0.912 12 C 0.035 3.965 13 C -0.524 4.524 14 H 0.074 0.926 15 C 0.006 3.994 16 N -0.931 5.931 17 Si 0.947 3.053 18 H -0.274 1.274 19 H -0.292 1.292 20 H -0.258 1.258 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.124 4.124 26 C -0.130 4.130 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.416 0.584 39 H 0.007 0.993 40 H 0.003 0.997 41 H 0.260 0.740 42 H 0.114 0.886 43 H 0.139 0.861 44 H 0.148 0.852 45 H 0.147 0.853 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 3.457 -9.080 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.056 4.056 3 C -0.191 4.191 4 C -0.239 4.239 5 C -0.745 4.745 6 S 2.710 3.290 7 O -0.966 6.966 8 O -0.982 6.982 9 N -0.857 5.857 10 C 0.100 3.900 11 H 0.106 0.894 12 C -0.004 4.004 13 C -0.562 4.562 14 H 0.092 0.908 15 C -0.192 4.192 16 N -0.571 5.571 17 Si 0.772 3.228 18 H -0.200 1.200 19 H -0.218 1.218 20 H -0.182 1.182 21 C -0.103 4.103 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.148 4.148 27 H 0.092 0.908 28 H 0.109 0.891 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.111 0.889 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.160 0.840 38 H 0.251 0.749 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.069 0.931 42 H 0.132 0.868 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.165 0.835 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.320 3.088 -9.564 15.138 hybrid contribution 1.891 0.392 0.566 2.012 sum -9.429 3.480 -8.998 13.490 Atomic orbital electron populations 1.22424 0.93291 1.03314 1.04663 1.20352 0.96256 0.97949 0.91030 1.21842 1.01427 0.92556 1.03275 1.22441 1.02848 1.00479 0.98136 1.30678 1.13624 1.22166 1.08058 1.04723 0.74373 0.77794 0.72149 1.93553 1.30633 1.87172 1.85232 1.93519 1.78529 1.70302 1.55812 1.55327 1.60324 1.50287 1.19766 1.19682 0.92471 0.94841 0.83035 0.89421 1.19196 0.91443 0.96487 0.93246 1.21564 1.01287 1.23621 1.09699 0.90753 1.25806 1.00821 0.97519 0.95097 1.70092 1.27433 1.42494 1.17114 0.85717 0.78449 0.79224 0.79380 1.19983 1.21765 1.18190 1.20526 0.96023 0.95157 0.98545 1.21094 0.99321 0.93657 1.00492 1.21419 0.94307 1.00601 0.98642 1.21455 0.98811 0.95285 0.99387 1.21428 0.98700 0.94304 0.99735 1.21258 0.93945 1.00795 0.98812 0.90797 0.89088 0.92842 0.92198 0.90204 0.91730 0.92976 0.88937 0.91172 0.83649 0.83997 0.74936 0.97515 0.97861 0.93075 0.86835 0.84279 0.83380 0.83481 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.00 71.98 0.58 -3.44 16 2 C -0.05 -1.25 0.79 -52.18 -0.04 -1.29 16 3 C -0.13 -2.47 8.47 71.98 0.61 -1.86 16 4 C -0.18 -4.21 8.00 71.98 0.58 -3.63 16 5 C -0.61 -16.67 4.92 71.98 0.35 -16.31 16 6 S 2.61 86.73 4.42 -56.49 -0.25 86.48 16 7 O -0.98 -35.70 15.39 -127.65 -1.96 -37.67 16 8 O -0.99 -36.80 15.70 -127.65 -2.00 -38.81 16 9 N -1.10 -39.34 4.36 -172.52 -0.75 -40.09 16 10 C 0.21 7.91 2.21 44.25 0.10 8.01 16 11 H 0.09 3.09 7.01 -2.39 -0.02 3.07 16 12 C 0.03 1.65 4.55 29.85 0.14 1.78 16 13 C -0.52 -26.06 8.84 25.60 0.23 -25.83 16 14 H 0.07 3.35 7.70 -2.91 -0.02 3.33 16 15 C 0.01 0.30 5.46 84.65 0.46 0.76 16 16 N -0.93 -53.46 13.29 21.45 0.28 -53.17 16 17 Si 0.95 41.12 29.54 68.60 2.03 43.14 16 18 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 19 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 20 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 21 C -0.10 -3.71 4.91 -19.87 -0.10 -3.80 16 22 C -0.13 -4.48 9.33 22.27 0.21 -4.27 16 23 C -0.13 -3.90 10.05 22.27 0.22 -3.67 16 24 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 25 C -0.12 -3.42 10.05 22.27 0.22 -3.20 16 26 C -0.13 -4.25 9.67 22.27 0.22 -4.03 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.05 1.42 5.47 -2.39 -0.01 1.40 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.05 1.42 5.46 -2.39 -0.01 1.41 16 34 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.15 3.65 7.44 -2.39 -0.02 3.63 16 37 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 38 H 0.42 14.76 8.59 -96.74 -0.83 13.92 16 39 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 40 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.11 3.92 7.55 -2.91 -0.02 3.90 16 43 H 0.14 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.15 2.84 8.06 -2.92 -0.02 2.82 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.13 3.80 8.04 -2.91 -0.02 3.78 16 Total: -1.00 -67.47 380.48 1.46 -66.01 By element: Atomic # 1 Polarization: 38.01 SS G_CDS: 0.13 Total: 38.13 kcal Atomic # 6 Polarization: -68.02 SS G_CDS: 3.99 Total: -64.03 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -0.47 Total: -93.26 kcal Atomic # 8 Polarization: -72.51 SS G_CDS: -3.97 Total: -76.48 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: 86.73 SS G_CDS: -0.25 Total: 86.48 kcal Total: -67.47 1.46 -66.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282070896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.679 kcal (2) G-P(sol) polarization free energy of solvation -67.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds