Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47304 * 2 1 4 4 C 1.38281 * 119.92759 * 90.00042 * 3 2 1 5 5 C 1.38106 * 120.07778 * 180.02562 * 4 3 2 6 6 C 1.38905 * 119.92322 * 359.97438 * 5 4 3 7 7 N 1.39678 * 120.07086 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99617 * 68.22021 * 7 6 5 9 9 C 1.52995 * 109.46962 * 295.16728 * 8 7 6 10 10 C 1.52993 * 109.47548 * 55.16812 * 8 7 6 11 11 S 1.65600 * 120.00264 * 248.21038 * 7 6 5 12 12 O 1.42104 * 104.27497 * 20.32321 * 11 7 6 13 13 O 1.42100 * 104.27378 * 148.17584 * 11 7 6 14 14 C 1.81394 * 104.45194 * 264.24778 * 11 7 6 15 15 C 1.53003 * 109.47263 * 179.97438 * 14 11 7 16 16 C 1.50696 * 109.47334 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99937 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00038 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99858 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47128 * 89.99629 * 20 18 16 22 22 H 1.48491 * 109.47351 * 209.99561 * 20 18 16 23 23 H 1.48506 * 109.47158 * 330.00039 * 20 18 16 24 24 C 1.38906 * 119.85226 * 0.25921 * 6 5 4 25 25 C 1.38103 * 119.92665 * 359.49109 * 24 6 5 26 26 H 1.08997 * 109.47365 * 59.99715 * 1 2 3 27 27 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46614 * 299.99884 * 1 2 3 29 29 H 1.09003 * 109.46614 * 240.00116 * 2 1 3 30 30 H 1.08997 * 109.47365 * 120.00285 * 2 1 3 31 31 H 1.08003 * 119.95943 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.03364 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47067 * 175.17091 * 8 7 6 34 34 H 1.08997 * 109.47108 * 66.98164 * 9 8 7 35 35 H 1.08998 * 109.47468 * 186.98665 * 9 8 7 36 36 H 1.09006 * 109.47348 * 306.98196 * 9 8 7 37 37 H 1.09009 * 109.46964 * 64.62406 * 10 8 7 38 38 H 1.08994 * 109.47498 * 184.62020 * 10 8 7 39 39 H 1.09000 * 109.47367 * 304.62912 * 10 8 7 40 40 H 1.08999 * 109.47673 * 299.99976 * 14 11 7 41 41 H 1.09004 * 109.46985 * 60.00382 * 14 11 7 42 42 H 1.09007 * 109.46919 * 300.00342 * 15 14 11 43 43 H 1.08999 * 109.47088 * 60.00065 * 15 14 11 44 44 H 0.97009 * 119.99764 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03734 * 179.72033 * 24 6 5 46 46 H 1.07994 * 119.96837 * 180.25739 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0712 1.1984 5 6 2.7223 3.3734 1.2020 6 6 2.9543 4.0297 0.0000 7 7 3.4189 5.3469 0.0000 8 6 4.7735 5.6458 0.4714 9 6 4.8794 5.3153 1.9614 10 6 5.7832 4.8035 -0.3108 11 16 2.4388 6.5707 -0.5328 12 8 1.1264 6.0335 -0.4416 13 8 2.8262 7.6943 0.2461 14 6 2.9111 6.8059 -2.2683 15 6 2.0650 7.9243 -2.8802 16 6 2.4570 8.1192 -4.3221 17 1 3.2323 7.5071 -4.7585 18 6 1.8265 9.0799 -5.0841 19 7 0.8827 9.8257 -4.5526 20 14 2.3128 9.3221 -6.8714 21 1 1.4799 8.4462 -7.7341 22 1 2.1001 10.7409 -7.2544 23 1 3.7453 8.9714 -7.0465 24 6 2.7176 3.3751 -1.2021 25 6 2.2627 2.0711 -1.1986 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0821 1.5602 2.1327 32 1 2.9013 3.8809 2.1385 33 1 4.9865 6.7037 0.3178 34 1 4.7894 4.2382 2.1020 35 1 5.8444 5.6518 2.3406 36 1 4.0800 5.8206 2.5035 37 1 5.7655 5.0971 -1.3605 38 1 6.7820 4.9643 0.0946 39 1 5.5212 3.7490 -0.2242 40 1 3.9657 7.0755 -2.3246 41 1 2.7427 5.8806 -2.8193 42 1 1.0104 7.6542 -2.8240 43 1 2.2329 8.8497 -2.3293 44 1 0.4393 10.5019 -5.0886 45 1 2.8927 3.8840 -2.1384 46 1 2.0824 1.5602 -2.1327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290108019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = -64.731609 kcal Electronic energy + Delta-G solvation = -26368.741957 eV Core-core repulsion = 22770.856032 eV Total energy + Delta-G solvation = -3597.885925 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90007 -37.34983 -36.63786 -35.45425 -33.92316 -33.85100 -31.55212 -31.24006 -30.87750 -28.21950 -27.28431 -25.62963 -23.95108 -22.77292 -21.71467 -21.51964 -20.62613 -19.01661 -17.72361 -16.63204 -16.57998 -15.84678 -15.77353 -15.20515 -15.16837 -14.57954 -14.23015 -14.01884 -13.98733 -13.69991 -13.53347 -13.45540 -13.27331 -12.90224 -12.53587 -12.37309 -12.14805 -12.05701 -11.78842 -11.71624 -11.60699 -11.56365 -11.39716 -11.24328 -11.19120 -11.09537 -10.98581 -10.87598 -10.73723 -10.43044 -10.39542 -9.87714 -9.52594 -9.04678 -8.93336 -8.51761 -8.31864 -6.13697 -4.19512 0.64023 1.28516 1.40009 2.90665 3.25181 3.31442 3.34060 3.65907 4.24735 4.36882 4.53431 4.66128 4.70549 4.75425 4.94945 4.98409 5.09325 5.10451 5.21098 5.21453 5.24745 5.33224 5.39769 5.45295 5.52384 5.54816 5.68952 5.69560 5.72132 5.73529 5.79258 5.83211 6.01336 6.03432 6.07354 6.16999 6.22826 6.28317 6.45248 6.53671 6.58134 6.69047 7.14874 7.27434 7.33415 7.78979 8.15421 8.83693 9.45315 10.97354 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003819 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.142998 B = 7330.522319 C = 8388.313699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 C -0.091 4.091 4 C -0.108 4.108 5 C -0.117 4.117 6 C 0.164 3.836 7 N -0.957 5.957 8 C 0.141 3.859 9 C -0.164 4.164 10 C -0.163 4.163 11 S 2.579 3.421 12 O -0.951 6.951 13 O -0.959 6.959 14 C -0.588 4.588 15 C 0.029 3.971 16 C -0.520 4.520 17 H 0.062 0.938 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.125 4.125 25 C -0.100 4.100 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.033 0.967 43 H 0.033 0.967 44 H 0.265 0.735 45 H 0.126 0.874 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -18.218 11.208 22.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.091 4.091 4 C -0.127 4.127 5 C -0.138 4.138 6 C 0.070 3.930 7 N -0.786 5.786 8 C 0.037 3.963 9 C -0.223 4.223 10 C -0.221 4.221 11 S 2.680 3.320 12 O -0.942 6.942 13 O -0.949 6.949 14 C -0.721 4.721 15 C -0.010 4.010 16 C -0.559 4.559 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.727 3.273 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.146 4.146 25 C -0.119 4.119 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.146 0.854 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.075 0.925 45 H 0.144 0.856 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.464 -17.568 11.755 22.104 hybrid contribution 0.598 0.133 -1.535 1.653 sum 7.062 -17.435 10.221 21.408 Atomic orbital electron populations 1.21768 0.94703 1.01496 1.02633 1.20515 0.96237 0.92592 1.02601 1.19898 0.99641 0.96403 0.93168 1.20874 0.99802 0.94452 0.97544 1.21391 0.99555 0.95186 0.97653 1.17137 0.98125 0.84479 0.93220 1.55894 1.26124 1.17419 1.79119 1.20952 0.80225 1.00618 0.94514 1.22304 1.02427 1.02263 0.95308 1.22177 0.98487 1.00730 1.00727 1.06200 0.74083 0.72900 0.78821 1.93564 1.35646 1.77870 1.87089 1.93545 1.83169 1.50270 1.67952 1.30531 1.11311 1.10474 1.19798 1.18970 0.94196 0.90335 0.97520 1.20980 1.21050 1.19320 0.94592 0.92013 1.25067 0.94877 0.95557 0.98950 1.69957 1.24263 1.21783 1.36790 0.86468 0.78936 0.77527 0.84350 1.20436 1.20979 1.19738 1.21400 1.00688 0.95104 0.97383 1.20851 0.99176 0.94154 0.97723 0.92276 0.92584 0.92473 0.91112 0.91235 0.85992 0.85428 0.88044 0.91785 0.91514 0.91866 0.91854 0.91434 0.91886 0.86142 0.86213 0.94842 0.94863 0.92499 0.85563 0.85678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.08 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.09 -0.97 5.14 -104.59 -0.54 -1.51 16 4 C -0.11 -1.18 9.69 -39.61 -0.38 -1.57 16 5 C -0.12 -1.47 8.44 -39.38 -0.33 -1.81 16 6 C 0.16 2.31 3.39 -83.79 -0.28 2.03 16 7 N -0.96 -14.11 2.69 -52.17 -0.14 -14.25 16 8 C 0.14 1.72 3.11 -67.93 -0.21 1.51 16 9 C -0.16 -1.72 8.07 37.15 0.30 -1.42 16 10 C -0.16 -1.63 9.18 37.15 0.34 -1.29 16 11 S 2.58 49.14 5.25 -107.50 -0.56 48.58 16 12 O -0.95 -20.88 17.14 -57.54 -0.99 -21.87 16 13 O -0.96 -20.34 16.85 -57.54 -0.97 -21.31 16 14 C -0.59 -11.50 6.12 37.16 0.23 -11.27 16 15 C 0.03 0.74 4.98 -27.88 -0.14 0.61 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16 20 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 24 C -0.13 -1.69 9.84 -39.38 -0.39 -2.08 16 25 C -0.10 -1.18 9.69 -39.61 -0.38 -1.56 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 31 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 32 H 0.13 1.46 6.28 -52.49 -0.33 1.13 16 33 H 0.10 1.28 7.16 -51.93 -0.37 0.90 16 34 H 0.06 0.61 6.21 -51.93 -0.32 0.29 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.64 7.40 -51.93 -0.38 0.25 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 41 H 0.12 2.11 7.07 -51.92 -0.37 1.74 16 42 H 0.03 0.91 8.14 -51.92 -0.42 0.49 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.27 7.39 8.31 -40.82 -0.34 7.06 16 45 H 0.13 1.62 6.98 -52.48 -0.37 1.26 16 46 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -34.23 385.02 -10.74 -44.97 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.59 Total: 0.90 kcal Atomic # 6 Polarization: -31.18 SS G_CDS: -2.00 Total: -33.18 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.60 Total: -40.03 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -1.96 Total: -43.18 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: 49.14 SS G_CDS: -0.56 Total: 48.58 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.23 -10.74 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290108019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.761 kcal (2) G-P(sol) polarization free energy of solvation -34.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds