Wall clock time and date at job start Tue Mar 31 2020 14:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47304 * 2 1 4 4 C 1.38281 * 119.92759 * 90.00042 * 3 2 1 5 5 C 1.38106 * 120.07778 * 180.02562 * 4 3 2 6 6 C 1.38905 * 119.92322 * 359.97438 * 5 4 3 7 7 N 1.39678 * 120.07086 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99617 * 68.22021 * 7 6 5 9 9 C 1.52995 * 109.46962 * 295.16728 * 8 7 6 10 10 C 1.52993 * 109.47548 * 55.16812 * 8 7 6 11 11 S 1.65600 * 120.00264 * 248.21038 * 7 6 5 12 12 O 1.42104 * 104.27497 * 20.32321 * 11 7 6 13 13 O 1.42100 * 104.27378 * 148.17584 * 11 7 6 14 14 C 1.81394 * 104.45194 * 264.24778 * 11 7 6 15 15 C 1.53003 * 109.47263 * 179.97438 * 14 11 7 16 16 C 1.50696 * 109.47334 * 180.02562 * 15 14 11 17 17 H 1.07997 * 119.99937 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00038 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99858 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00027 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47128 * 89.99629 * 20 18 16 22 22 H 1.48491 * 109.47351 * 209.99561 * 20 18 16 23 23 H 1.48506 * 109.47158 * 330.00039 * 20 18 16 24 24 C 1.38906 * 119.85226 * 0.25921 * 6 5 4 25 25 C 1.38103 * 119.92665 * 359.49109 * 24 6 5 26 26 H 1.08997 * 109.47365 * 59.99715 * 1 2 3 27 27 H 1.09003 * 109.46858 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46614 * 299.99884 * 1 2 3 29 29 H 1.09003 * 109.46614 * 240.00116 * 2 1 3 30 30 H 1.08997 * 109.47365 * 120.00285 * 2 1 3 31 31 H 1.08003 * 119.95943 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.03364 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.47067 * 175.17091 * 8 7 6 34 34 H 1.08997 * 109.47108 * 66.98164 * 9 8 7 35 35 H 1.08998 * 109.47468 * 186.98665 * 9 8 7 36 36 H 1.09006 * 109.47348 * 306.98196 * 9 8 7 37 37 H 1.09009 * 109.46964 * 64.62406 * 10 8 7 38 38 H 1.08994 * 109.47498 * 184.62020 * 10 8 7 39 39 H 1.09000 * 109.47367 * 304.62912 * 10 8 7 40 40 H 1.08999 * 109.47673 * 299.99976 * 14 11 7 41 41 H 1.09004 * 109.46985 * 60.00382 * 14 11 7 42 42 H 1.09007 * 109.46919 * 300.00342 * 15 14 11 43 43 H 1.08999 * 109.47088 * 60.00065 * 15 14 11 44 44 H 0.97009 * 119.99764 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.03734 * 179.72033 * 24 6 5 46 46 H 1.07994 * 119.96837 * 180.25739 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0712 1.1984 5 6 2.7223 3.3734 1.2020 6 6 2.9543 4.0297 0.0000 7 7 3.4189 5.3469 0.0000 8 6 4.7735 5.6458 0.4714 9 6 4.8794 5.3153 1.9614 10 6 5.7832 4.8035 -0.3108 11 16 2.4388 6.5707 -0.5328 12 8 1.1264 6.0335 -0.4416 13 8 2.8262 7.6943 0.2461 14 6 2.9111 6.8059 -2.2683 15 6 2.0650 7.9243 -2.8802 16 6 2.4570 8.1192 -4.3221 17 1 3.2323 7.5071 -4.7585 18 6 1.8265 9.0799 -5.0841 19 7 0.8827 9.8257 -4.5526 20 14 2.3128 9.3221 -6.8714 21 1 1.4799 8.4462 -7.7341 22 1 2.1001 10.7409 -7.2544 23 1 3.7453 8.9714 -7.0465 24 6 2.7176 3.3751 -1.2021 25 6 2.2627 2.0711 -1.1986 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 2.0821 1.5602 2.1327 32 1 2.9013 3.8809 2.1385 33 1 4.9865 6.7037 0.3178 34 1 4.7894 4.2382 2.1020 35 1 5.8444 5.6518 2.3406 36 1 4.0800 5.8206 2.5035 37 1 5.7655 5.0971 -1.3605 38 1 6.7820 4.9643 0.0946 39 1 5.5212 3.7490 -0.2242 40 1 3.9657 7.0755 -2.3246 41 1 2.7427 5.8806 -2.8193 42 1 1.0104 7.6542 -2.8240 43 1 2.2329 8.8497 -2.3293 44 1 0.4393 10.5019 -5.0886 45 1 2.8927 3.8840 -2.1384 46 1 2.0824 1.5602 -2.1327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290108019.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:11 Heat of formation + Delta-G solvation = -85.450198 kcal Electronic energy + Delta-G solvation = -26369.640383 eV Core-core repulsion = 22770.856032 eV Total energy + Delta-G solvation = -3598.784351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.84819 -38.48768 -38.07320 -37.10020 -35.95111 -34.64764 -33.20594 -32.47542 -31.82846 -29.12364 -28.11352 -27.61776 -24.78932 -23.88503 -23.39117 -22.39855 -21.71557 -20.25131 -19.32734 -18.46977 -17.72464 -17.26563 -16.70493 -16.62100 -16.52158 -16.34576 -15.27038 -15.18030 -14.97594 -14.79468 -14.56062 -14.46288 -14.33401 -14.14925 -13.84874 -13.74388 -13.37876 -13.30051 -13.19878 -12.96094 -12.90054 -12.83627 -12.77145 -12.67143 -12.37016 -12.31210 -12.16224 -12.04997 -11.96915 -11.82005 -11.65169 -11.58927 -11.23986 -10.67240 -10.42538 -9.85538 -9.28404 -8.28221 -6.42918 -0.88173 0.33757 0.47838 1.39805 1.41881 1.52934 1.56169 2.36380 2.70085 2.75083 3.05090 3.09456 3.64169 3.87306 3.94026 3.95457 3.98314 4.09646 4.13251 4.21831 4.32111 4.38560 4.49720 4.56002 4.61382 4.64953 4.70129 4.77326 4.79823 4.93759 4.95415 5.05196 5.13407 5.19444 5.20088 5.20790 5.22422 5.32611 5.37256 5.39047 5.45724 5.57811 5.65082 5.72906 5.74121 6.01987 6.17772 6.70169 7.27509 8.84275 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013074 B = 0.003819 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.142998 B = 7330.522319 C = 8388.313699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.079 4.079 3 C -0.088 4.088 4 C -0.108 4.108 5 C -0.127 4.127 6 C 0.139 3.861 7 N -0.943 5.943 8 C 0.128 3.872 9 C -0.162 4.162 10 C -0.156 4.156 11 S 2.597 3.403 12 O -0.986 6.986 13 O -0.987 6.987 14 C -0.584 4.584 15 C 0.023 3.977 16 C -0.539 4.539 17 H 0.077 0.923 18 C -0.003 4.003 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.256 1.256 24 C -0.145 4.145 25 C -0.108 4.108 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.004 0.996 43 H 0.006 0.994 44 H 0.268 0.732 45 H 0.124 0.876 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 -20.837 10.963 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.089 4.089 4 C -0.126 4.126 5 C -0.147 4.147 6 C 0.046 3.954 7 N -0.775 5.775 8 C 0.025 3.975 9 C -0.220 4.220 10 C -0.214 4.214 11 S 2.698 3.302 12 O -0.976 6.976 13 O -0.977 6.977 14 C -0.716 4.716 15 C -0.016 4.016 16 C -0.577 4.577 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.574 5.574 20 Si 0.798 3.202 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.180 1.180 24 C -0.165 4.165 25 C -0.126 4.126 26 H 0.064 0.936 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.106 0.894 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.077 0.923 45 H 0.142 0.858 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.222 -20.184 11.507 24.645 hybrid contribution 0.049 0.843 -1.368 1.608 sum 8.271 -19.341 10.138 23.351 Atomic orbital electron populations 1.21774 0.94833 1.02388 1.01673 1.20575 0.95941 0.90970 1.04157 1.20275 0.98275 0.97661 0.92692 1.21218 0.98671 0.93854 0.98896 1.21578 0.99735 0.96044 0.97385 1.17345 0.99936 0.83934 0.94197 1.55412 1.26624 1.16899 1.78566 1.21305 0.79264 1.00822 0.96138 1.22301 1.03114 1.02923 0.93700 1.22138 0.98822 1.00194 1.00290 1.05340 0.73675 0.72959 0.78214 1.93505 1.38212 1.78547 1.87350 1.93499 1.83549 1.52278 1.68380 1.30411 1.11465 1.09097 1.20643 1.18811 0.93753 0.91387 0.97609 1.21474 1.21292 1.19500 0.95481 0.90496 1.26135 0.94671 0.95158 1.04210 1.70108 1.25712 1.22653 1.38900 0.85293 0.79388 0.77491 0.77979 1.19530 1.20758 1.18019 1.21559 1.01619 0.96146 0.97213 1.21137 0.98741 0.93643 0.99113 0.93583 0.90810 0.93119 0.89893 0.89408 0.83314 0.84734 0.88829 0.90636 0.89208 0.93444 0.92159 0.89095 0.91763 0.83786 0.84227 0.97763 0.97555 0.92325 0.85766 0.83965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.08 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.09 -1.70 5.14 -19.84 -0.10 -1.80 16 4 C -0.11 -2.12 9.69 22.25 0.22 -1.90 16 5 C -0.13 -3.03 8.44 22.40 0.19 -2.84 16 6 C 0.14 3.84 3.39 38.21 0.13 3.97 16 7 N -0.94 -27.75 2.69 -318.97 -0.86 -28.61 16 8 C 0.13 3.01 3.11 44.99 0.14 3.15 16 9 C -0.16 -3.16 8.07 71.98 0.58 -2.58 16 10 C -0.16 -2.83 9.18 71.98 0.66 -2.17 16 11 S 2.60 102.23 5.25 -56.49 -0.30 101.93 16 12 O -0.99 -45.06 17.14 -127.65 -2.19 -47.25 16 13 O -0.99 -43.49 16.85 -127.65 -2.15 -45.65 16 14 C -0.58 -23.27 6.12 71.98 0.44 -22.83 16 15 C 0.02 1.25 4.98 29.85 0.15 1.40 16 16 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 17 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 20 Si 0.98 43.37 29.54 68.60 2.03 45.40 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C -0.14 -3.82 9.84 22.40 0.22 -3.60 16 25 C -0.11 -2.37 9.69 22.25 0.22 -2.16 16 26 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 30 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 31 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.13 2.93 6.28 -2.91 -0.02 2.91 16 33 H 0.09 2.33 7.16 -2.39 -0.02 2.31 16 34 H 0.07 1.29 6.21 -2.39 -0.01 1.27 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.05 1.07 8.10 -2.38 -0.02 1.05 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.06 1.17 7.40 -2.39 -0.02 1.15 16 40 H 0.14 4.97 8.14 -2.39 -0.02 4.95 16 41 H 0.14 4.94 7.07 -2.39 -0.02 4.92 16 42 H 0.00 0.24 8.14 -2.38 -0.02 0.22 16 43 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.27 15.34 8.31 -92.70 -0.77 14.57 16 45 H 0.12 3.18 6.98 -2.91 -0.02 3.16 16 46 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -76.18 385.02 2.19 -73.99 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 0.94 Total: 20.54 kcal Atomic # 6 Polarization: -67.71 SS G_CDS: 4.43 Total: -63.28 kcal Atomic # 7 Polarization: -85.11 SS G_CDS: -0.57 Total: -85.68 kcal Atomic # 8 Polarization: -88.56 SS G_CDS: -4.34 Total: -92.90 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 102.23 SS G_CDS: -0.30 Total: 101.93 kcal Total: -76.18 2.19 -73.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290108019.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.460 kcal (2) G-P(sol) polarization free energy of solvation -76.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds