Wall clock time and date at job start Tue Mar 31 2020 13:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38219 * 120.41747 * 2 1 4 4 N 1.31857 * 120.76003 * 179.97438 * 3 2 1 5 5 C 1.31891 * 121.72932 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76252 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.41718 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46854 * 269.97718 * 7 6 5 9 9 C 1.50707 * 109.47178 * 180.02562 * 8 7 6 10 10 O 1.20831 * 119.99497 * 0.02562 * 9 8 7 11 11 O 1.34222 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.45195 * 117.00212 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47376 * 180.02562 * 12 11 9 14 14 C 1.38633 * 119.74817 * 269.72920 * 13 12 11 15 15 C 1.37618 * 120.24853 * 179.72198 * 14 13 12 16 16 C 1.40717 * 119.74594 * 0.56689 * 15 14 13 17 17 C 1.41392 * 120.24787 * 179.68556 * 16 15 14 18 18 H 1.07999 * 120.00168 * 155.31278 * 17 16 15 19 19 C 1.39945 * 119.99682 * 335.31076 * 17 16 15 20 20 N 1.30825 * 120.00184 * 342.23225 * 19 17 16 21 21 Si 1.86806 * 119.99841 * 162.23304 * 19 17 16 22 22 H 1.48496 * 109.46975 * 94.66422 * 21 19 17 23 23 H 1.48500 * 109.47021 * 214.66285 * 21 19 17 24 24 H 1.48491 * 109.46961 * 334.66415 * 21 19 17 25 25 C 1.40718 * 119.50672 * 359.70505 * 16 15 14 26 26 C 1.37618 * 119.74816 * 0.02562 * 25 16 15 27 27 C 1.38627 * 120.41524 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47438 * 89.99631 * 1 2 3 29 29 H 1.09001 * 109.47116 * 209.99923 * 1 2 3 30 30 H 1.09001 * 109.46577 * 329.99220 * 1 2 3 31 31 H 1.07990 * 119.62512 * 0.02562 * 3 2 1 32 32 H 1.07992 * 119.62218 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47454 * 29.97602 * 7 6 5 34 34 H 1.08998 * 109.46872 * 149.97851 * 7 6 5 35 35 H 1.09004 * 109.47448 * 300.00248 * 8 7 6 36 36 H 1.08998 * 109.47272 * 60.00378 * 8 7 6 37 37 H 1.09003 * 109.47333 * 300.00328 * 12 11 9 38 38 H 1.08998 * 109.46909 * 60.00087 * 12 11 9 39 39 H 1.08001 * 119.87497 * 359.97438 * 14 13 12 40 40 H 1.08005 * 120.12620 * 180.28020 * 15 14 13 41 41 H 0.97002 * 119.99932 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.12530 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.87828 * 179.97438 * 26 25 16 44 44 H 1.07997 * 120.79386 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0822 0.0005 6 6 3.5948 -1.1472 0.0005 7 6 4.4027 -2.4193 0.0012 8 6 4.6761 -2.8504 -1.4412 9 6 5.4835 -4.1230 -1.4407 10 8 5.8065 -4.6330 -0.3940 11 8 5.8428 -4.6904 -2.6028 12 6 6.6201 -5.9143 -2.5263 13 6 6.9289 -6.4012 -3.9186 14 6 6.0566 -7.2732 -4.5517 15 6 6.3255 -7.7198 -5.8253 16 6 7.4972 -7.2975 -6.4804 17 6 7.7873 -7.7550 -7.7864 18 1 8.4220 -7.1696 -8.4351 19 6 7.2520 -8.9665 -8.2384 20 7 6.7853 -9.8363 -7.3798 21 14 7.2037 -9.3415 -10.0678 22 1 8.4038 -10.1316 -10.4429 23 1 5.9796 -10.1217 -10.3810 24 1 7.1894 -8.0694 -10.8336 25 6 8.3781 -6.4168 -5.8258 26 6 8.0861 -5.9787 -4.5543 27 6 2.2089 -1.1955 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5140 31 1 1.6676 2.1276 0.0004 32 1 5.3046 0.1284 0.0014 33 1 5.3487 -2.2488 0.5149 34 1 3.8461 -3.2029 0.5153 35 1 3.7301 -3.0210 -1.9551 36 1 5.2327 -2.0669 -1.9553 37 1 7.5517 -5.7206 -1.9946 38 1 6.0491 -6.6746 -1.9934 39 1 5.1605 -7.5999 -4.0450 40 1 5.6423 -8.3955 -6.3184 41 1 6.4140 -10.6758 -7.6932 42 1 9.2804 -6.0866 -6.3191 43 1 8.7610 -5.3030 -4.0499 44 1 1.6887 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292208720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:55 Heat of formation + Delta-G solvation = -57.377813 kcal Electronic energy + Delta-G solvation = -24932.827671 eV Core-core repulsion = 21199.816679 eV Total energy + Delta-G solvation = -3733.010992 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70581 -40.08747 -37.73824 -36.27458 -34.87341 -33.92214 -33.88620 -31.09913 -30.45447 -29.38971 -27.67413 -27.33652 -25.56924 -23.78657 -23.27652 -21.43749 -21.10822 -20.35201 -20.06668 -17.53825 -17.40924 -17.21849 -17.05987 -16.30623 -16.22621 -15.37610 -14.74972 -14.64045 -14.32275 -14.21666 -13.84549 -13.52226 -13.45066 -13.36487 -13.27496 -12.85953 -12.77931 -12.60284 -12.32562 -12.20263 -12.04602 -11.82021 -11.55958 -11.32684 -11.27521 -11.13555 -10.66387 -10.64795 -10.30230 -10.17450 -9.90946 -9.73621 -9.70311 -9.49192 -9.23323 -9.11891 -7.58330 -7.47635 -6.89032 -4.48135 0.75225 0.95002 2.39800 2.42553 2.92846 2.98670 3.01298 3.06636 3.31458 3.49697 3.84209 4.11991 4.38755 4.39505 4.52106 4.63282 4.64073 4.73153 4.78465 4.91756 5.16180 5.18191 5.25070 5.34194 5.41077 5.53298 5.59112 5.63722 5.65861 5.69225 5.81036 5.88815 5.99097 6.06870 6.23154 6.29131 6.39544 6.82506 6.86444 6.95748 7.16045 7.24292 7.49631 7.66797 7.71738 7.93929 7.98415 8.02669 8.17256 8.51853 8.76690 8.84741 10.05133 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.001845 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.993753 B =15168.806638 C =15683.115450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.136 4.136 3 C 0.092 3.908 4 N -0.480 5.480 5 C 0.096 3.904 6 C -0.127 4.127 7 C -0.065 4.065 8 C -0.111 4.111 9 C 0.455 3.545 10 O -0.522 6.522 11 O -0.351 6.351 12 C 0.136 3.864 13 C -0.237 4.237 14 C -0.075 4.075 15 C -0.171 4.171 16 C 0.118 3.882 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.075 3.925 20 N -0.786 5.786 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.230 4.230 26 C -0.064 4.064 27 C -0.073 4.073 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.153 0.847 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.283 0.717 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.567 14.440 11.759 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.138 4.138 3 C -0.066 4.066 4 N -0.187 5.187 5 C -0.060 4.060 6 C -0.129 4.129 7 C -0.103 4.103 8 C -0.149 4.149 9 C 0.299 3.701 10 O -0.412 6.412 11 O -0.267 6.267 12 C 0.064 3.936 13 C -0.238 4.238 14 C -0.094 4.094 15 C -0.190 4.190 16 C 0.116 3.884 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.144 4.144 20 N -0.411 5.411 21 Si 0.734 3.266 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.250 4.250 26 C -0.082 4.082 27 C -0.099 4.099 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.171 0.829 32 H 0.173 0.827 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.137 0.863 41 H 0.094 0.906 42 H 0.113 0.887 43 H 0.107 0.893 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.094 14.808 12.056 21.599 hybrid contribution -0.389 -1.259 -0.733 1.508 sum -10.483 13.550 11.323 20.535 Atomic orbital electron populations 1.20737 0.90131 1.03167 1.02789 1.20956 0.97664 0.94128 1.01054 1.22673 0.89997 0.97481 0.96417 1.67696 1.08360 1.31231 1.11461 1.22719 1.00432 0.87080 0.95817 1.20868 0.94511 0.96545 1.00948 1.20336 1.00645 0.93785 0.95512 1.21362 1.01112 0.93712 0.98722 1.23574 0.77982 0.86062 0.82506 1.90634 1.53344 1.63835 1.33353 1.86707 1.65708 1.40942 1.33350 1.21721 0.93258 0.81908 0.96703 1.18665 1.00326 1.08465 0.96328 1.20532 0.96797 0.96731 0.95344 1.21296 0.98545 1.04320 0.94829 1.17693 0.89611 0.88837 0.92286 1.19670 1.26388 1.03902 0.98512 0.90152 1.25978 0.92715 0.95511 1.00174 1.69825 1.28618 1.06348 1.36273 0.86275 0.78666 0.79470 0.82239 1.19450 1.19918 1.18293 1.20956 1.00732 1.07744 0.95535 1.20388 0.95483 0.97472 0.94872 1.21459 0.93424 0.98407 0.96625 0.90717 0.91237 0.91150 0.82949 0.82670 0.89474 0.89681 0.87765 0.87622 0.92069 0.92013 0.89343 0.86275 0.90638 0.88687 0.89290 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.04 36.01 0.36 -0.19 16 2 C -0.14 -1.03 5.90 -104.48 -0.62 -1.65 16 3 C 0.09 0.78 10.86 -17.55 -0.19 0.59 16 4 N -0.48 -5.05 10.36 -13.26 -0.14 -5.19 16 5 C 0.10 0.91 10.86 -17.55 -0.19 0.72 16 6 C -0.13 -1.11 5.15 -104.48 -0.54 -1.65 16 7 C -0.06 -0.58 4.66 -27.88 -0.13 -0.71 16 8 C -0.11 -1.13 5.79 -27.88 -0.16 -1.30 16 9 C 0.46 6.74 7.96 36.01 0.29 7.02 16 10 O -0.52 -8.83 15.73 -18.75 -0.30 -9.12 16 11 O -0.35 -6.19 10.20 -39.24 -0.40 -6.59 16 12 C 0.14 2.56 5.58 36.01 0.20 2.76 16 13 C -0.24 -5.19 5.54 -104.33 -0.58 -5.77 16 14 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 15 C -0.17 -4.35 8.70 -38.87 -0.34 -4.69 16 16 C 0.12 3.10 5.57 -106.82 -0.60 2.50 16 17 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 18 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 19 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 20 N -0.79 -19.72 10.97 55.55 0.61 -19.11 16 21 Si 0.91 18.03 29.60 -169.99 -5.03 13.00 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 25 C -0.23 -5.56 9.80 -38.87 -0.38 -5.94 16 26 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 27 C -0.07 -0.59 9.55 -39.27 -0.37 -0.96 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.09 0.79 8.05 -51.93 -0.42 0.38 16 34 H 0.08 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 36 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 38 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 39 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 40 H 0.12 3.11 6.18 -52.48 -0.32 2.79 16 41 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 42 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 43 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 44 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 381.25 15.07 5.75 5.75 Total: -1.00 -29.70 381.25 -10.15 -39.84 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.19 Total: 4.99 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -4.44 Total: -23.56 kcal Atomic # 7 Polarization: -24.78 SS G_CDS: 0.47 Total: -24.31 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.70 Total: -15.71 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -29.70 -10.15 -39.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292208720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.535 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds