Wall clock time and date at job start Tue Mar 31 2020 13:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38219 * 120.41747 * 2 1 4 4 N 1.31857 * 120.76003 * 179.97438 * 3 2 1 5 5 C 1.31891 * 121.72932 * 0.02562 * 4 3 2 6 6 C 1.38184 * 120.76252 * 359.97438 * 5 4 3 7 7 C 1.50696 * 120.41718 * 180.02562 * 6 5 4 8 8 C 1.53002 * 109.46854 * 269.97718 * 7 6 5 9 9 C 1.50707 * 109.47178 * 180.02562 * 8 7 6 10 10 O 1.20831 * 119.99497 * 0.02562 * 9 8 7 11 11 O 1.34222 * 120.00274 * 179.97438 * 9 8 7 12 12 C 1.45195 * 117.00212 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.47376 * 180.02562 * 12 11 9 14 14 C 1.38633 * 119.74817 * 269.72920 * 13 12 11 15 15 C 1.37618 * 120.24853 * 179.72198 * 14 13 12 16 16 C 1.40717 * 119.74594 * 0.56689 * 15 14 13 17 17 C 1.41392 * 120.24787 * 179.68556 * 16 15 14 18 18 H 1.07999 * 120.00168 * 155.31278 * 17 16 15 19 19 C 1.39945 * 119.99682 * 335.31076 * 17 16 15 20 20 N 1.30825 * 120.00184 * 342.23225 * 19 17 16 21 21 Si 1.86806 * 119.99841 * 162.23304 * 19 17 16 22 22 H 1.48496 * 109.46975 * 94.66422 * 21 19 17 23 23 H 1.48500 * 109.47021 * 214.66285 * 21 19 17 24 24 H 1.48491 * 109.46961 * 334.66415 * 21 19 17 25 25 C 1.40718 * 119.50672 * 359.70505 * 16 15 14 26 26 C 1.37618 * 119.74816 * 0.02562 * 25 16 15 27 27 C 1.38627 * 120.41524 * 179.97438 * 2 1 3 28 28 H 1.08992 * 109.47438 * 89.99631 * 1 2 3 29 29 H 1.09001 * 109.47116 * 209.99923 * 1 2 3 30 30 H 1.09001 * 109.46577 * 329.99220 * 1 2 3 31 31 H 1.07990 * 119.62512 * 0.02562 * 3 2 1 32 32 H 1.07992 * 119.62218 * 180.02562 * 5 4 3 33 33 H 1.08999 * 109.47454 * 29.97602 * 7 6 5 34 34 H 1.08998 * 109.46872 * 149.97851 * 7 6 5 35 35 H 1.09004 * 109.47448 * 300.00248 * 8 7 6 36 36 H 1.08998 * 109.47272 * 60.00378 * 8 7 6 37 37 H 1.09003 * 109.47333 * 300.00328 * 12 11 9 38 38 H 1.08998 * 109.46909 * 60.00087 * 12 11 9 39 39 H 1.08001 * 119.87497 * 359.97438 * 14 13 12 40 40 H 1.08005 * 120.12620 * 180.28020 * 15 14 13 41 41 H 0.97002 * 119.99932 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.12530 * 179.97438 * 25 16 15 43 43 H 1.08000 * 119.87828 * 179.97438 * 26 25 16 44 44 H 1.07997 * 120.79386 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2068 1.1919 0.0000 4 7 3.5254 1.1998 0.0005 5 6 4.2257 0.0822 0.0005 6 6 3.5948 -1.1472 0.0005 7 6 4.4027 -2.4193 0.0012 8 6 4.6761 -2.8504 -1.4412 9 6 5.4835 -4.1230 -1.4407 10 8 5.8065 -4.6330 -0.3940 11 8 5.8428 -4.6904 -2.6028 12 6 6.6201 -5.9143 -2.5263 13 6 6.9289 -6.4012 -3.9186 14 6 6.0566 -7.2732 -4.5517 15 6 6.3255 -7.7198 -5.8253 16 6 7.4972 -7.2975 -6.4804 17 6 7.7873 -7.7550 -7.7864 18 1 8.4220 -7.1696 -8.4351 19 6 7.2520 -8.9665 -8.2384 20 7 6.7853 -9.8363 -7.3798 21 14 7.2037 -9.3415 -10.0678 22 1 8.4038 -10.1316 -10.4429 23 1 5.9796 -10.1217 -10.3810 24 1 7.1894 -8.0694 -10.8336 25 6 8.3781 -6.4168 -5.8258 26 6 8.0861 -5.9787 -4.5543 27 6 2.2089 -1.1955 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5140 31 1 1.6676 2.1276 0.0004 32 1 5.3046 0.1284 0.0014 33 1 5.3487 -2.2488 0.5149 34 1 3.8461 -3.2029 0.5153 35 1 3.7301 -3.0210 -1.9551 36 1 5.2327 -2.0669 -1.9553 37 1 7.5517 -5.7206 -1.9946 38 1 6.0491 -6.6746 -1.9934 39 1 5.1605 -7.5999 -4.0450 40 1 5.6423 -8.3955 -6.3184 41 1 6.4140 -10.6758 -7.6932 42 1 9.2804 -6.0866 -6.3191 43 1 8.7610 -5.3030 -4.0499 44 1 1.6887 -2.1420 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292208720.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:54 Heat of formation + Delta-G solvation = -70.042306 kcal Electronic energy + Delta-G solvation = -24933.376845 eV Core-core repulsion = 21199.816679 eV Total energy + Delta-G solvation = -3733.560166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.58638 -41.11552 -39.50214 -37.62647 -35.69011 -35.67796 -34.48203 -32.67002 -31.45541 -31.22402 -28.98196 -28.15597 -26.59274 -25.30361 -23.98299 -22.96648 -22.31944 -21.82216 -21.29242 -19.27956 -18.69145 -17.85550 -17.84116 -17.65043 -17.36578 -17.07694 -16.02075 -15.67592 -15.65009 -15.23782 -15.10371 -14.78284 -14.41002 -14.13016 -14.10461 -13.95421 -13.87614 -13.69565 -13.61482 -13.32334 -13.23973 -13.09405 -12.99392 -12.78256 -12.48309 -12.41195 -12.21283 -12.04038 -11.66143 -11.63548 -11.42342 -11.29414 -11.03769 -10.54730 -10.37905 -9.73781 -9.44538 -9.34333 -8.70029 -6.40276 0.12233 0.32550 0.73820 1.09974 1.22075 1.38141 1.43272 1.53704 1.96911 2.19117 2.70599 2.82723 3.48087 3.63755 3.75367 3.81650 3.88285 4.04179 4.06045 4.08964 4.10504 4.15482 4.17041 4.39143 4.47171 4.52027 4.54193 4.62059 4.66808 4.83261 4.86356 4.94210 4.99595 5.08699 5.11246 5.23107 5.29391 5.31845 5.36584 5.38435 5.56691 5.64250 5.80725 5.87853 6.04773 6.13267 6.31154 6.63352 6.77938 6.87704 6.96209 7.03061 8.27071 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.020081 B = 0.001845 C = 0.001785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.993753 B =15168.806638 C =15683.115450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.136 4.136 3 C 0.079 3.921 4 N -0.509 5.509 5 C 0.081 3.919 6 C -0.128 4.128 7 C -0.055 4.055 8 C -0.102 4.102 9 C 0.456 3.544 10 O -0.543 6.543 11 O -0.363 6.363 12 C 0.141 3.859 13 C -0.231 4.231 14 C -0.081 4.081 15 C -0.194 4.194 16 C 0.086 3.914 17 C -0.493 4.493 18 H 0.079 0.921 19 C 0.035 3.965 20 N -0.819 5.819 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.245 4.245 26 C -0.066 4.066 27 C -0.081 4.081 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.172 0.828 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.104 0.896 41 H 0.291 0.709 42 H 0.103 0.897 43 H 0.118 0.882 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.701 15.396 12.177 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.138 4.138 3 C -0.078 4.078 4 N -0.217 5.217 5 C -0.075 4.075 6 C -0.130 4.130 7 C -0.093 4.093 8 C -0.139 4.139 9 C 0.302 3.698 10 O -0.434 6.434 11 O -0.280 6.280 12 C 0.069 3.931 13 C -0.232 4.232 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.084 3.916 17 C -0.522 4.522 18 H 0.098 0.902 19 C -0.181 4.181 20 N -0.444 5.444 21 Si 0.804 3.196 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.182 1.182 25 C -0.265 4.265 26 C -0.084 4.084 27 C -0.106 4.106 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.189 0.811 32 H 0.182 0.818 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.136 0.864 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.231 15.779 12.498 23.050 hybrid contribution -0.084 -1.452 -0.675 1.603 sum -11.315 14.327 11.823 21.750 Atomic orbital electron populations 1.20793 0.88176 1.04194 1.03481 1.21247 0.99085 0.93581 0.99853 1.23083 0.89690 0.98840 0.96146 1.67693 1.09476 1.31930 1.12562 1.22927 1.01055 0.87252 0.96261 1.20793 0.94853 0.95950 1.01433 1.20234 1.00628 0.93869 0.94618 1.21466 1.01096 0.91431 0.99932 1.24387 0.77493 0.86712 0.81250 1.90630 1.54258 1.64655 1.33834 1.86670 1.65870 1.40387 1.35028 1.21510 0.94209 0.82845 0.94541 1.19004 0.99563 1.07201 0.97417 1.20778 0.97741 0.96658 0.94716 1.21275 0.98693 1.05287 0.96090 1.18058 0.90417 0.89990 0.93133 1.19916 1.28103 1.05121 0.99038 0.90242 1.26831 0.91767 0.94731 1.04786 1.69869 1.29210 1.06937 1.38383 0.85162 0.79074 0.79232 0.76094 1.18634 1.18934 1.18166 1.21173 1.00918 1.07861 0.96531 1.20715 0.96023 0.97413 0.94283 1.21752 0.93314 0.99405 0.96167 0.90052 0.90472 0.89934 0.81134 0.81835 0.89723 0.89772 0.86132 0.86125 0.91032 0.91492 0.87505 0.87793 0.89860 0.87926 0.86395 0.83097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.04 71.24 0.72 -0.09 16 2 C -0.14 -1.79 5.90 -19.77 -0.12 -1.91 16 3 C 0.08 1.24 10.86 84.68 0.92 2.16 16 4 N -0.51 -10.25 10.36 -195.85 -2.03 -12.28 16 5 C 0.08 1.45 10.86 84.67 0.92 2.37 16 6 C -0.13 -2.03 5.15 -19.77 -0.10 -2.14 16 7 C -0.06 -0.90 4.66 29.85 0.14 -0.76 16 8 C -0.10 -1.84 5.79 29.85 0.17 -1.66 16 9 C 0.46 12.60 7.96 71.24 0.57 13.16 16 10 O -0.54 -17.45 15.73 21.95 0.35 -17.10 16 11 O -0.36 -12.10 10.20 -51.34 -0.52 -12.62 16 12 C 0.14 5.07 5.58 71.24 0.40 5.47 16 13 C -0.23 -9.90 5.54 -19.68 -0.11 -10.01 16 14 C -0.08 -3.73 9.67 22.22 0.21 -3.52 16 15 C -0.19 -10.18 8.70 22.73 0.20 -9.98 16 16 C 0.09 4.65 5.57 -21.29 -0.12 4.54 16 17 C -0.49 -26.22 9.05 23.46 0.21 -26.01 16 18 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 19 C 0.03 1.72 5.14 85.26 0.44 2.16 16 20 N -0.82 -42.06 10.97 21.83 0.24 -41.82 16 21 Si 0.98 37.21 29.60 68.60 2.03 39.24 16 22 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 23 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 24 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 25 C -0.25 -11.98 9.80 22.73 0.22 -11.76 16 26 C -0.07 -2.89 9.67 22.22 0.21 -2.68 16 27 C -0.08 -1.13 9.55 22.47 0.21 -0.92 16 28 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.47 8.10 -2.39 -0.02 0.45 16 30 H 0.08 0.41 8.09 -2.39 -0.02 0.39 16 31 H 0.17 1.82 8.06 -2.92 -0.02 1.80 16 32 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.08 1.42 8.05 -2.39 -0.02 1.40 16 34 H 0.08 1.39 8.05 -2.39 -0.02 1.37 16 35 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 38 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 39 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.10 5.66 6.18 -2.91 -0.02 5.65 16 41 H 0.29 13.39 8.30 -92.71 -0.77 12.63 16 42 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 43 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 44 H 0.15 1.55 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -64.84 381.25 6.16 -58.69 By element: Atomic # 1 Polarization: 26.46 SS G_CDS: 1.00 Total: 27.46 kcal Atomic # 6 Polarization: -46.66 SS G_CDS: 5.10 Total: -41.56 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: -1.79 Total: -54.10 kcal Atomic # 8 Polarization: -29.54 SS G_CDS: -0.18 Total: -29.72 kcal Atomic # 14 Polarization: 37.21 SS G_CDS: 2.03 Total: 39.24 kcal Total: -64.84 6.16 -58.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292208720.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.357 kcal (2) G-P(sol) polarization free energy of solvation -64.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds