Wall clock time and date at job start Tue Mar 31 2020 14:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50698 * 109.47166 * 2 1 4 4 C 1.38260 * 119.99559 * 264.99427 * 3 2 1 5 5 C 1.38212 * 119.99650 * 179.71963 * 4 3 2 6 6 C 1.38255 * 120.00300 * 0.28729 * 5 4 3 7 7 C 1.38216 * 119.99744 * 359.97134 * 6 5 4 8 8 C 1.38208 * 120.00333 * 85.19279 * 3 2 1 9 9 C 1.50698 * 120.00186 * 0.03695 * 8 3 2 10 10 N 1.46502 * 109.46972 * 80.16985 * 9 8 3 11 11 S 1.65607 * 119.99721 * 165.00060 * 10 9 8 12 12 O 1.42102 * 104.27152 * 181.07649 * 11 10 9 13 13 O 1.42096 * 104.27748 * 308.93256 * 11 10 9 14 14 C 1.81393 * 104.44932 * 65.00562 * 11 10 9 15 15 C 1.53001 * 109.47086 * 179.97438 * 14 11 10 16 16 C 1.53003 * 109.46871 * 299.99946 * 15 14 11 17 17 C 1.52997 * 109.47245 * 59.99650 * 15 14 11 18 18 C 1.50707 * 109.47005 * 179.97438 * 15 14 11 19 19 H 1.07997 * 120.00035 * 0.02562 * 18 15 14 20 20 C 1.37872 * 119.99582 * 179.97438 * 18 15 14 21 21 N 1.31508 * 120.00467 * 359.97438 * 20 18 15 22 22 Si 1.86804 * 119.99681 * 179.97438 * 20 18 15 23 23 H 1.48493 * 109.47178 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47021 * 120.00224 * 22 20 18 25 25 H 1.48496 * 109.46953 * 239.99899 * 22 20 18 26 26 H 1.09000 * 109.47225 * 60.00352 * 1 2 3 27 27 H 1.09003 * 109.47047 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47000 * 300.00106 * 1 2 3 29 29 H 1.09005 * 109.47450 * 239.99707 * 2 1 3 30 30 H 1.09000 * 109.47225 * 119.99648 * 2 1 3 31 31 H 1.08002 * 120.00476 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.99941 * 180.25946 * 5 4 3 33 33 H 1.08005 * 120.00230 * 179.97438 * 6 5 4 34 34 H 1.08002 * 119.99715 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.47640 * 200.17138 * 9 8 3 36 36 H 1.09000 * 109.47091 * 320.17597 * 9 8 3 37 37 H 0.96997 * 120.00081 * 345.01075 * 10 9 8 38 38 H 1.09000 * 109.46897 * 299.99612 * 14 11 10 39 39 H 1.09003 * 109.47298 * 59.99210 * 14 11 10 40 40 H 1.08991 * 109.47295 * 60.00224 * 16 15 14 41 41 H 1.09003 * 109.47093 * 180.02562 * 16 15 14 42 42 H 1.09005 * 109.46729 * 299.99620 * 16 15 14 43 43 H 1.09009 * 109.46560 * 60.00083 * 17 15 14 44 44 H 1.08993 * 109.47031 * 179.97438 * 17 15 14 45 45 H 1.08999 * 109.47376 * 300.00417 * 17 15 14 46 46 H 0.97006 * 120.00495 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3612 2.0376 -1.1929 5 6 2.8164 3.3426 -1.1934 6 6 2.9485 4.0292 -0.0007 7 6 2.6248 3.4108 1.1922 8 6 2.1681 2.1058 1.1927 9 6 1.8147 1.4317 2.4933 10 7 2.9203 0.5660 2.9109 11 16 2.9815 -0.0083 4.4630 12 8 4.1786 -0.7728 4.5066 13 8 2.8215 1.1492 5.2715 14 6 1.5310 -1.0884 4.6034 15 6 1.4758 -1.6879 6.0100 16 6 2.7451 -2.5025 6.2673 17 6 1.3749 -0.5618 7.0407 18 6 0.2703 -2.5848 6.1268 19 1 -0.3901 -2.7145 5.2822 20 6 0.0112 -3.2404 7.3117 21 7 0.8162 -3.0836 8.3397 22 14 -1.4834 -4.3515 7.4568 23 1 -2.2219 -4.3585 6.1686 24 1 -1.0440 -5.7322 7.7824 25 1 -2.3719 -3.8477 8.5347 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.2578 1.5015 -2.1247 32 1 3.0694 3.8259 -2.1255 33 1 3.3047 5.0489 -0.0011 34 1 2.7284 3.9470 2.1240 35 1 1.6365 2.1879 3.2579 36 1 0.9145 0.8319 2.3588 37 1 3.6166 0.3294 2.2784 38 1 0.6268 -0.5081 4.4196 39 1 1.6031 -1.8909 3.8693 40 1 3.6167 -1.8535 6.1829 41 1 2.7056 -2.9300 7.2692 42 1 2.8170 -3.3049 5.5329 43 1 0.4706 0.0186 6.8573 44 1 1.3351 -0.9889 8.0427 45 1 2.2465 0.0873 6.9563 46 1 0.6337 -3.5446 9.1735 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295208326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:43 Heat of formation + Delta-G solvation = -63.417234 kcal Electronic energy + Delta-G solvation = -26440.263563 eV Core-core repulsion = 22842.434633 eV Total energy + Delta-G solvation = -3597.828930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.93285 -36.55205 -36.27627 -35.53290 -35.24670 -34.06292 -31.67249 -31.07308 -29.53453 -26.63941 -25.89885 -25.71538 -25.22316 -23.89761 -22.07112 -20.71693 -19.61391 -18.76980 -17.43183 -16.76109 -16.18267 -15.95024 -15.83913 -15.26206 -15.10537 -14.72426 -14.51650 -13.97837 -13.67329 -13.48541 -13.39161 -13.16338 -12.98105 -12.79027 -12.51131 -12.23749 -12.09790 -12.02479 -11.81050 -11.45398 -11.37069 -11.13897 -11.08677 -10.96903 -10.92899 -10.79318 -10.70134 -10.36579 -10.28116 -10.11634 -9.66108 -9.64106 -9.25164 -9.03201 -8.83427 -8.66241 -8.41053 -6.04039 -4.16021 0.78377 1.17366 1.21752 3.20509 3.24380 3.32968 3.35287 3.64160 4.28820 4.37444 4.48252 4.57083 4.69942 4.81028 4.82812 4.98548 5.11748 5.21335 5.22052 5.27255 5.33553 5.43685 5.48325 5.64773 5.69164 5.73754 5.82300 5.83985 5.92519 5.98791 6.11386 6.30467 6.32063 6.37309 6.49625 6.69947 6.79570 6.81244 6.90728 7.02156 7.13119 7.31486 7.50218 7.67492 7.97990 8.09349 8.32499 8.82754 9.49542 10.97278 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.018766 B = 0.003501 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.674835 B = 7995.693363 C = 8845.812584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.064 4.064 4 C -0.122 4.122 5 C -0.115 4.115 6 C -0.128 4.128 7 C -0.099 4.099 8 C -0.092 4.092 9 C 0.153 3.847 10 N -1.126 6.126 11 S 2.593 3.407 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.582 4.582 15 C 0.082 3.918 16 C -0.164 4.164 17 C -0.164 4.164 18 C -0.501 4.501 19 H 0.059 0.941 20 C 0.064 3.936 21 N -0.883 5.883 22 Si 0.895 3.105 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.027 0.973 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.028 0.972 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 10.138 -17.975 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.133 4.133 3 C -0.065 4.065 4 C -0.140 4.140 5 C -0.133 4.133 6 C -0.146 4.146 7 C -0.117 4.117 8 C -0.094 4.094 9 C 0.028 3.972 10 N -0.883 5.883 11 S 2.691 3.309 12 O -0.954 6.954 13 O -0.954 6.954 14 C -0.715 4.715 15 C 0.080 3.920 16 C -0.222 4.222 17 C -0.221 4.221 18 C -0.540 4.540 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.723 3.277 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.245 0.755 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.046 0.954 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.113 0.887 45 H 0.047 0.953 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.981 10.375 -17.013 20.025 hybrid contribution -1.087 -0.920 -0.588 1.541 sum 0.894 9.455 -17.602 20.000 Atomic orbital electron populations 1.21773 0.94392 1.02233 1.02216 1.20683 0.96595 0.92485 1.03548 1.19842 0.97877 0.96276 0.92519 1.21026 1.00327 0.95219 0.97419 1.21154 0.99369 0.94728 0.98055 1.21135 1.00923 1.00059 0.92508 1.21174 0.97664 0.94370 0.98519 1.19715 1.01086 0.94544 0.94040 1.20215 0.89234 0.93616 0.94179 1.55926 1.35084 1.64316 1.32946 1.05648 0.77557 0.75679 0.72048 1.93556 1.44395 1.72669 1.84816 1.93535 1.87488 1.48209 1.66151 1.30526 1.17236 1.13653 1.10129 1.17932 0.96512 0.93397 0.84186 1.22275 0.94978 0.99911 1.04994 1.22273 0.98577 0.96690 1.04595 1.20979 1.08451 1.26526 0.98085 0.92243 1.24939 0.96585 0.96510 0.95732 1.69810 1.36802 1.42766 1.02764 0.86488 0.82708 0.80418 0.78073 1.19838 1.20975 1.20957 0.92673 0.91960 0.92158 0.90940 0.90019 0.86087 0.86193 0.86036 0.85550 0.89469 0.90691 0.75489 0.86465 0.86233 0.95379 0.88643 0.94480 0.94482 0.88676 0.95323 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.75 37.16 0.36 -0.94 16 2 C -0.10 -0.88 5.40 -27.89 -0.15 -1.03 16 3 C -0.06 -0.65 5.13 -104.63 -0.54 -1.18 16 4 C -0.12 -1.10 9.68 -39.58 -0.38 -1.48 16 5 C -0.11 -0.98 10.05 -39.58 -0.40 -1.38 16 6 C -0.13 -1.17 10.05 -39.58 -0.40 -1.56 16 7 C -0.10 -1.03 9.67 -39.58 -0.38 -1.41 16 8 C -0.09 -1.02 5.28 -104.63 -0.55 -1.57 16 9 C 0.15 1.84 5.41 -5.19 -0.03 1.81 16 10 N -1.13 -15.30 5.23 -11.66 -0.06 -15.36 16 11 S 2.59 47.28 4.49 -107.50 -0.48 46.80 16 12 O -0.96 -20.16 15.70 -57.54 -0.90 -21.06 16 13 O -0.96 -19.98 15.12 -57.54 -0.87 -20.85 16 14 C -0.58 -11.04 5.01 37.16 0.19 -10.85 16 15 C 0.08 1.96 0.52 -155.66 -0.08 1.88 16 16 C -0.16 -4.02 7.78 37.16 0.29 -3.73 16 17 C -0.16 -3.99 7.77 37.16 0.29 -3.70 16 18 C -0.50 -12.99 8.01 -34.44 -0.28 -13.27 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 21 N -0.88 -23.99 9.35 55.43 0.52 -23.47 16 22 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.55 6.74 -51.93 -0.35 0.20 16 29 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 30 H 0.08 0.80 6.57 -51.93 -0.34 0.46 16 31 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.13 1.23 8.04 -52.49 -0.42 0.81 16 35 H 0.09 1.07 7.56 -51.93 -0.39 0.67 16 36 H 0.08 0.80 5.86 -51.93 -0.30 0.49 16 37 H 0.41 5.01 8.57 -34.48 -0.30 4.71 16 38 H 0.12 1.98 8.14 -51.92 -0.42 1.56 16 39 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 40 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 41 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 42 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 44 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 45 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 46 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -31.63 368.93 -10.48 -42.11 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -7.07 Total: 7.65 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: -2.15 Total: -36.83 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.46 Total: -38.83 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.77 Total: -41.91 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 47.28 SS G_CDS: -0.48 Total: 46.80 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.63 -10.48 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295208326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.309 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds