Wall clock time and date at job start Tue Mar 31 2020 14:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 C 1.52998 * 109.47027 * 239.99522 * 2 1 3 5 5 C 1.53005 * 109.47090 * 119.99822 * 2 1 3 6 6 C 1.53000 * 109.46869 * 59.99871 * 5 2 1 7 7 C 1.53000 * 109.47342 * 180.02562 * 6 5 2 8 8 N 1.46494 * 109.47693 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.46848 * 300.00066 * 1 2 3 27 27 H 1.08996 * 109.46693 * 59.99983 * 1 2 3 28 28 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46731 * 299.99650 * 3 2 1 31 31 H 1.08997 * 109.47183 * 59.99586 * 3 2 1 32 32 H 1.08998 * 109.47170 * 299.99866 * 4 2 1 33 33 H 1.08996 * 109.46980 * 60.00671 * 4 2 1 34 34 H 1.09002 * 109.46901 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46914 * 300.00079 * 5 2 1 36 36 H 1.08999 * 109.47332 * 179.97438 * 5 2 1 37 37 H 1.09001 * 109.47666 * 60.00389 * 6 5 2 38 38 H 1.09002 * 109.47489 * 300.00040 * 6 5 2 39 39 H 1.09011 * 109.47083 * 59.99469 * 7 6 5 40 40 H 1.08997 * 109.47087 * 300.00638 * 7 6 5 41 41 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 42 42 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 43 43 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 44 44 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 45 45 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 46 46 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0394 -2.8848 2.4989 8 7 1.5506 -4.2658 2.4992 9 16 2.2346 -5.3861 3.5089 10 8 1.5273 -6.6005 3.2989 11 8 3.6412 -5.2677 3.3455 12 6 1.8816 -4.8839 5.1606 13 6 2.7646 -4.0506 5.8298 14 6 2.4963 -3.6475 7.1180 15 6 1.3264 -4.0941 7.7598 16 6 1.0437 -3.6919 9.0856 17 1 0.4064 -4.3003 9.7102 18 6 1.5894 -2.5054 9.5883 19 7 2.0587 -1.6017 8.7669 20 14 1.6480 -2.2119 11.4323 21 1 2.9252 -2.7383 11.9769 22 1 1.5566 -0.7551 11.7048 23 1 0.5085 -2.9092 12.0808 24 6 0.4402 -4.9443 7.0729 25 6 0.7261 -5.3301 5.7832 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -0.2074 2.1392 36 1 3.1300 -0.7217 1.2491 37 1 1.8933 -2.6777 0.3594 38 1 0.4400 -2.1637 1.2493 39 1 1.6757 -2.3708 3.3887 40 1 3.1294 -2.8848 2.4994 41 1 0.8289 -4.5250 1.9052 42 1 3.6644 -3.7133 5.3370 43 1 3.1833 -2.9948 7.6360 44 1 2.4372 -0.7794 9.1154 45 1 -0.4603 -5.2933 7.5561 46 1 0.0472 -5.9823 5.2537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313474098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:51 Heat of formation + Delta-G solvation = -98.414183 kcal Electronic energy + Delta-G solvation = -25444.376710 eV Core-core repulsion = 21845.030198 eV Total energy + Delta-G solvation = -3599.346511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.41263 -37.56992 -36.47691 -35.29355 -35.08744 -34.03710 -30.85218 -30.25383 -29.46196 -27.45793 -27.43616 -25.81559 -25.36777 -21.88811 -21.44032 -21.11826 -19.04502 -18.50839 -17.61520 -17.01867 -16.54813 -15.87941 -15.54155 -15.37724 -14.76226 -14.34736 -14.21618 -14.16984 -14.01851 -13.38167 -13.22277 -12.90807 -12.76519 -12.40960 -12.19001 -12.09138 -11.94916 -11.82169 -11.77634 -11.74386 -11.45973 -11.35256 -11.31668 -11.26479 -11.21181 -11.06772 -10.90188 -10.57919 -10.51352 -10.42115 -10.38471 -9.75614 -9.61736 -9.51253 -8.97760 -7.95941 -7.69984 -7.14830 -4.80282 1.29966 2.25582 2.87612 2.91071 2.92421 2.93592 3.66088 3.77345 4.23786 4.53650 4.57394 4.67392 4.67816 5.06671 5.07826 5.23530 5.33535 5.38610 5.44241 5.46798 5.51262 5.63339 5.68667 5.69398 5.77166 5.81393 5.84772 5.93858 6.06196 6.07858 6.11226 6.13177 6.13397 6.25075 6.35217 6.42954 6.68066 6.71169 6.91840 7.05287 7.32852 7.37125 7.43279 7.63924 7.77273 7.97023 8.31972 8.51407 8.65203 9.76640 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.003409 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.265970 B = 8211.763094 C =10055.291873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.128 4.128 7 C 0.119 3.881 8 N -1.127 6.127 9 S 2.694 3.306 10 O -0.988 6.988 11 O -0.985 6.985 12 C -0.787 4.787 13 C -0.017 4.017 14 C -0.183 4.183 15 C 0.139 3.861 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.766 5.766 20 Si 0.917 3.083 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.240 4.240 25 C 0.002 3.998 26 H 0.055 0.945 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.408 0.592 42 H 0.103 0.897 43 H 0.122 0.878 44 H 0.289 0.711 45 H 0.100 0.900 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 6.310 -12.201 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.149 4.149 6 C -0.167 4.167 7 C -0.007 4.007 8 N -0.883 5.883 9 S 2.793 3.207 10 O -0.979 6.979 11 O -0.976 6.976 12 C -0.882 4.882 13 C -0.037 4.037 14 C -0.203 4.203 15 C 0.136 3.864 16 C -0.463 4.463 17 H 0.106 0.894 18 C -0.150 4.150 19 N -0.389 5.389 20 Si 0.741 3.259 21 H -0.188 1.188 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.260 4.260 25 C -0.018 4.018 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.241 0.759 42 H 0.121 0.879 43 H 0.140 0.860 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.667 5.878 -12.416 13.753 hybrid contribution -0.635 0.667 1.126 1.455 sum -1.302 6.545 -11.289 13.114 Atomic orbital electron populations 1.21944 0.94690 1.02019 1.01525 1.20544 0.95685 0.95341 0.95443 1.21870 1.00975 0.95454 1.01589 1.21943 1.01011 1.00468 0.96721 1.21616 1.00951 0.94777 0.97508 1.21905 1.01477 0.95545 0.97762 1.21227 0.99319 0.81236 0.98924 1.55698 1.52578 1.22806 1.57238 1.01173 0.73037 0.72363 0.74144 1.93486 1.74699 1.43009 1.86698 1.93477 1.30683 1.86618 1.86793 1.29161 1.10362 1.26281 1.22445 1.20268 0.95289 0.92953 0.95202 1.21336 0.98654 1.05101 0.95211 1.17852 0.89258 0.87368 0.91943 1.19950 1.24489 1.04579 0.97299 0.89449 1.26131 0.92420 0.95158 1.01249 1.69815 1.25769 1.05706 1.37560 0.86143 0.80314 0.78420 0.81059 1.18787 1.19874 1.18211 1.21053 1.00981 1.08474 0.95515 1.20163 0.92945 0.93747 0.94920 0.92569 0.93067 0.92226 0.92678 0.92927 0.92591 0.92231 0.93064 0.92673 0.91327 0.91530 0.91154 0.91091 0.91425 0.90754 0.75939 0.87906 0.85975 0.90012 0.88219 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.12 37.16 0.30 -0.92 16 2 C -0.07 -0.61 0.80 -154.50 -0.12 -0.73 16 3 C -0.14 -1.15 8.47 37.16 0.31 -0.84 16 4 C -0.14 -1.18 8.12 37.16 0.30 -0.88 16 5 C -0.11 -1.09 4.27 -26.73 -0.11 -1.21 16 6 C -0.13 -1.36 4.65 -26.73 -0.12 -1.49 16 7 C 0.12 1.65 6.22 -4.05 -0.03 1.62 16 8 N -1.13 -16.87 6.00 -10.61 -0.06 -16.94 16 9 S 2.69 52.11 5.73 -107.50 -0.62 51.49 16 10 O -0.99 -20.99 17.26 -57.17 -0.99 -21.98 16 11 O -0.99 -21.20 16.72 -57.17 -0.96 -22.16 16 12 C -0.79 -17.34 5.97 -39.29 -0.23 -17.58 16 13 C -0.02 -0.39 9.49 -39.66 -0.38 -0.76 16 14 C -0.18 -4.55 8.70 -38.87 -0.34 -4.89 16 15 C 0.14 3.53 5.57 -106.83 -0.60 2.93 16 16 C -0.44 -10.66 9.05 -37.74 -0.34 -11.01 16 17 H 0.09 2.03 7.91 -52.49 -0.41 1.62 16 18 C 0.07 1.66 5.14 -17.34 -0.09 1.57 16 19 N -0.77 -17.98 10.95 55.55 0.61 -17.37 16 20 Si 0.92 16.96 29.60 -169.99 -5.03 11.92 16 21 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 24 C -0.24 -5.69 9.80 -38.87 -0.38 -6.07 16 25 C 0.00 0.05 9.49 -39.66 -0.38 -0.32 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.70 6.43 -51.93 -0.33 0.37 16 38 H 0.07 0.71 6.43 -51.93 -0.33 0.38 16 39 H 0.07 0.99 8.14 -51.92 -0.42 0.57 16 40 H 0.07 1.06 7.75 -51.93 -0.40 0.65 16 41 H 0.41 5.08 8.65 -34.47 -0.30 4.78 16 42 H 0.10 2.19 7.59 -52.49 -0.40 1.80 16 43 H 0.12 3.07 6.16 -52.49 -0.32 2.75 16 44 H 0.29 6.07 8.30 -40.82 -0.34 5.73 16 45 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 46 H 0.10 2.11 7.60 -52.48 -0.40 1.71 16 LS Contribution 380.59 15.07 5.74 5.74 Total: -1.00 -29.29 380.59 -10.87 -40.16 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -7.36 Total: 9.69 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: -2.20 Total: -40.56 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: 0.54 Total: -34.31 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -1.94 Total: -44.13 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.92 kcal Atomic # 16 Polarization: 52.11 SS G_CDS: -0.62 Total: 51.49 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.29 -10.87 -40.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313474098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.256 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds