Wall clock time and date at job start Tue Mar 31 2020 14:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47370 * 2 1 4 4 C 1.52998 * 109.47027 * 239.99522 * 2 1 3 5 5 C 1.53005 * 109.47090 * 119.99822 * 2 1 3 6 6 C 1.53000 * 109.46869 * 59.99871 * 5 2 1 7 7 C 1.53000 * 109.47342 * 180.02562 * 6 5 2 8 8 N 1.46494 * 109.47693 * 179.97438 * 7 6 5 9 9 S 1.65597 * 120.00241 * 164.72209 * 8 7 6 10 10 O 1.42103 * 106.40620 * 178.54272 * 9 8 7 11 11 O 1.42100 * 106.40630 * 311.46546 * 9 8 7 12 12 C 1.76208 * 107.21734 * 65.00320 * 9 8 7 13 13 C 1.38632 * 119.74525 * 269.73112 * 12 9 8 14 14 C 1.37628 * 120.24207 * 179.72238 * 13 12 9 15 15 C 1.40708 * 119.74460 * 0.56531 * 14 13 12 16 16 C 1.41395 * 120.24350 * 179.68162 * 15 14 13 17 17 H 1.07999 * 120.00421 * 204.40366 * 16 15 14 18 18 C 1.39948 * 120.00045 * 24.41232 * 16 15 14 19 19 N 1.30828 * 119.99938 * 17.83864 * 18 16 15 20 20 Si 1.86804 * 120.00206 * 197.84763 * 18 16 15 21 21 H 1.48496 * 109.47170 * 89.99474 * 20 18 16 22 22 H 1.48494 * 109.47127 * 209.99890 * 20 18 16 23 23 H 1.48504 * 109.46764 * 329.99426 * 20 18 16 24 24 C 1.40718 * 119.51587 * 359.70628 * 15 14 13 25 25 C 1.37620 * 119.73960 * 0.02562 * 24 15 14 26 26 H 1.08998 * 109.46848 * 300.00066 * 1 2 3 27 27 H 1.08996 * 109.46693 * 59.99983 * 1 2 3 28 28 H 1.08998 * 109.47036 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46984 * 179.97438 * 3 2 1 30 30 H 1.08993 * 109.46731 * 299.99650 * 3 2 1 31 31 H 1.08997 * 109.47183 * 59.99586 * 3 2 1 32 32 H 1.08998 * 109.47170 * 299.99866 * 4 2 1 33 33 H 1.08996 * 109.46980 * 60.00671 * 4 2 1 34 34 H 1.09002 * 109.46901 * 179.97438 * 4 2 1 35 35 H 1.08997 * 109.46914 * 300.00079 * 5 2 1 36 36 H 1.08999 * 109.47332 * 179.97438 * 5 2 1 37 37 H 1.09001 * 109.47666 * 60.00389 * 6 5 2 38 38 H 1.09002 * 109.47489 * 300.00040 * 6 5 2 39 39 H 1.09011 * 109.47083 * 59.99469 * 7 6 5 40 40 H 1.08997 * 109.47087 * 300.00638 * 7 6 5 41 41 H 0.96999 * 119.99814 * 345.00344 * 8 7 6 42 42 H 1.07992 * 119.88185 * 359.96919 * 13 12 9 43 43 H 1.07997 * 120.12556 * 180.27286 * 14 13 12 44 44 H 0.96994 * 120.00050 * 180.02562 * 19 18 16 45 45 H 1.07995 * 120.13001 * 179.97438 * 24 15 14 46 46 H 1.08005 * 119.87252 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0401 -0.7212 1.2493 6 6 1.5300 -2.1637 1.2493 7 6 2.0394 -2.8848 2.4989 8 7 1.5506 -4.2658 2.4992 9 16 2.2346 -5.3861 3.5089 10 8 1.5273 -6.6005 3.2989 11 8 3.6412 -5.2677 3.3455 12 6 1.8816 -4.8839 5.1606 13 6 2.7646 -4.0506 5.8298 14 6 2.4963 -3.6475 7.1180 15 6 1.3264 -4.0941 7.7598 16 6 1.0437 -3.6919 9.0856 17 1 0.4064 -4.3003 9.7102 18 6 1.5894 -2.5054 9.5883 19 7 2.0587 -1.6017 8.7669 20 14 1.6480 -2.2119 11.4323 21 1 2.9252 -2.7383 11.9769 22 1 1.5566 -0.7551 11.7048 23 1 0.5085 -2.9092 12.0808 24 6 0.4402 -4.9443 7.0729 25 6 0.7261 -5.3301 5.7832 26 1 -0.3633 0.5138 0.8900 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 -1.7490 -1.2491 33 1 1.6768 -0.2075 -2.1391 34 1 3.1300 -0.7209 -1.2494 35 1 1.6767 -0.2074 2.1392 36 1 3.1300 -0.7217 1.2491 37 1 1.8933 -2.6777 0.3594 38 1 0.4400 -2.1637 1.2493 39 1 1.6757 -2.3708 3.3887 40 1 3.1294 -2.8848 2.4994 41 1 0.8289 -4.5250 1.9052 42 1 3.6644 -3.7133 5.3370 43 1 3.1833 -2.9948 7.6360 44 1 2.4372 -0.7794 9.1154 45 1 -0.4603 -5.2933 7.5561 46 1 0.0472 -5.9823 5.2537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313474098.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:50 Heat of formation + Delta-G solvation = -115.116319 kcal Electronic energy + Delta-G solvation = -25445.100969 eV Core-core repulsion = 21845.030198 eV Total energy + Delta-G solvation = -3600.070770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.38497 -39.17897 -38.13188 -36.78356 -36.41807 -35.79890 -32.06725 -31.83710 -31.29023 -28.10580 -28.07671 -27.61805 -26.36253 -23.34439 -22.97166 -22.71468 -20.40532 -19.44420 -19.39042 -18.56987 -18.13844 -17.23861 -17.14137 -16.34889 -16.02134 -15.82863 -15.30808 -15.10865 -15.02422 -14.95736 -14.90108 -14.11825 -13.97806 -13.80836 -13.70038 -13.55711 -13.12616 -13.09475 -13.00969 -12.90526 -12.88514 -12.65268 -12.59190 -12.56690 -12.48217 -12.36368 -11.98504 -11.83332 -11.55098 -11.36426 -11.29572 -11.27629 -11.24464 -11.19140 -10.32470 -9.79037 -9.55044 -8.87357 -6.64969 -0.28090 0.48415 1.05660 1.35873 1.43673 1.50615 2.11493 2.26915 2.53450 2.94762 3.52832 3.58402 3.82146 3.95513 3.96642 4.17533 4.24502 4.31176 4.32486 4.48166 4.61714 4.71232 4.74407 4.83328 4.86802 4.90875 4.92103 4.94380 4.98986 5.07601 5.11986 5.15479 5.15915 5.24284 5.27066 5.28563 5.35182 5.48763 5.52433 5.59478 5.61440 5.62552 5.76410 5.93127 6.15216 6.23436 6.49026 6.68300 6.80990 8.07716 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.011068 B = 0.003409 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.265970 B = 8211.763094 C =10055.291873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.111 4.111 6 C -0.120 4.120 7 C 0.113 3.887 8 N -1.110 6.110 9 S 2.726 3.274 10 O -1.003 7.003 11 O -1.004 7.004 12 C -0.797 4.797 13 C -0.020 4.020 14 C -0.207 4.207 15 C 0.111 3.889 16 C -0.466 4.466 17 H 0.090 0.910 18 C 0.035 3.965 19 N -0.794 5.794 20 Si 0.991 3.009 21 H -0.261 1.261 22 H -0.263 1.263 23 H -0.254 1.254 24 C -0.259 4.259 25 C -0.002 4.002 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.424 0.576 42 H 0.115 0.885 43 H 0.111 0.889 44 H 0.299 0.701 45 H 0.111 0.889 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 6.804 -13.109 14.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.201 4.201 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.013 4.013 8 N -0.871 5.871 9 S 2.821 3.179 10 O -0.994 6.994 11 O -0.994 6.994 12 C -0.890 4.890 13 C -0.040 4.040 14 C -0.227 4.227 15 C 0.108 3.892 16 C -0.493 4.493 17 H 0.108 0.892 18 C -0.184 4.184 19 N -0.417 5.417 20 Si 0.810 3.190 21 H -0.186 1.186 22 H -0.187 1.187 23 H -0.178 1.178 24 C -0.279 4.279 25 C -0.022 4.022 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.260 0.740 42 H 0.133 0.867 43 H 0.129 0.871 44 H 0.110 0.890 45 H 0.129 0.871 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.117 6.368 -13.312 14.799 hybrid contribution -0.495 0.525 1.269 1.460 sum -1.613 6.893 -12.043 13.970 Atomic orbital electron populations 1.21947 0.94439 1.02133 1.01678 1.20534 0.95868 0.95502 0.94973 1.21868 1.01008 0.95181 1.01814 1.21938 1.00979 1.00510 0.96659 1.21623 1.00934 0.94360 0.97999 1.21874 1.02027 0.95578 0.96396 1.21401 0.99239 0.80420 1.00250 1.55264 1.52955 1.22740 1.56119 1.00244 0.72405 0.72078 0.73132 1.93459 1.74905 1.44389 1.86598 1.93454 1.32225 1.87006 1.86752 1.29649 1.09703 1.25110 1.24526 1.20454 0.95919 0.92871 0.94760 1.21354 0.98965 1.06203 0.96185 1.18199 0.89849 0.88314 0.92868 1.20226 1.25836 1.05703 0.97531 0.89160 1.26985 0.91419 0.94241 1.05790 1.69840 1.25835 1.06300 1.39683 0.85057 0.80240 0.78744 0.74944 1.18558 1.18680 1.17793 1.21285 1.01432 1.08904 0.96269 1.20457 0.93426 0.93650 0.94640 0.93167 0.92212 0.92116 0.92660 0.92055 0.93034 0.92140 0.92248 0.92758 0.92169 0.91628 0.89932 0.90134 0.92568 0.91142 0.74021 0.86724 0.87074 0.89018 0.87125 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.12 71.98 0.58 -1.60 16 2 C -0.07 -1.07 0.80 -52.18 -0.04 -1.11 16 3 C -0.14 -2.10 8.47 71.98 0.61 -1.49 16 4 C -0.14 -2.04 8.12 71.98 0.58 -1.45 16 5 C -0.11 -2.06 4.27 30.60 0.13 -1.93 16 6 C -0.12 -2.33 4.65 30.59 0.14 -2.19 16 7 C 0.11 2.98 6.22 86.38 0.54 3.52 16 8 N -1.11 -31.29 6.00 -187.49 -1.12 -32.41 16 9 S 2.73 102.16 5.73 -56.49 -0.32 101.84 16 10 O -1.00 -40.94 17.26 -128.00 -2.21 -43.15 16 11 O -1.00 -42.15 16.72 -128.00 -2.14 -44.29 16 12 C -0.80 -34.99 5.97 22.46 0.13 -34.86 16 13 C -0.02 -0.94 9.49 22.22 0.21 -0.73 16 14 C -0.21 -10.62 8.70 22.73 0.20 -10.42 16 15 C 0.11 5.79 5.57 -21.29 -0.12 5.67 16 16 C -0.47 -23.33 9.05 23.46 0.21 -23.12 16 17 H 0.09 4.29 7.91 -2.91 -0.02 4.26 16 18 C 0.04 1.62 5.14 85.26 0.44 2.06 16 19 N -0.79 -37.85 10.95 21.83 0.24 -37.61 16 20 Si 0.99 34.47 29.60 68.60 2.03 36.50 16 21 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 22 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 23 H -0.25 -8.61 7.11 99.48 0.71 -7.91 16 24 C -0.26 -12.46 9.80 22.73 0.22 -12.23 16 25 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 26 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.89 6.43 -2.39 -0.02 0.88 16 29 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.84 6.43 -2.39 -0.02 0.83 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.44 6.43 -2.39 -0.02 1.42 16 38 H 0.08 1.43 6.43 -2.39 -0.02 1.42 16 39 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.07 1.93 7.75 -2.39 -0.02 1.92 16 41 H 0.42 9.49 8.65 -96.75 -0.84 8.65 16 42 H 0.11 4.96 7.59 -2.91 -0.02 4.93 16 43 H 0.11 5.82 6.16 -2.91 -0.02 5.81 16 44 H 0.30 12.62 8.30 -92.71 -0.77 11.85 16 45 H 0.11 4.90 8.06 -2.91 -0.02 4.88 16 46 H 0.13 4.95 7.60 -2.91 -0.02 4.92 16 Total: -1.00 -62.39 380.59 0.66 -61.73 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: 0.13 Total: 37.16 kcal Atomic # 6 Polarization: -83.82 SS G_CDS: 4.06 Total: -79.76 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -0.89 Total: -70.02 kcal Atomic # 8 Polarization: -83.09 SS G_CDS: -4.35 Total: -87.44 kcal Atomic # 14 Polarization: 34.47 SS G_CDS: 2.03 Total: 36.50 kcal Atomic # 16 Polarization: 102.16 SS G_CDS: -0.32 Total: 101.84 kcal Total: -62.39 0.66 -61.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313474098.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.387 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds