Wall clock time and date at job start Tue Mar 31 2020 13:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38227 * 119.99675 * 2 1 4 4 C 1.38242 * 119.99675 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47320 * 59.99463 * 5 4 3 7 7 C 1.53001 * 109.47113 * 299.99740 * 5 4 3 8 8 C 1.52996 * 109.46992 * 180.02562 * 5 4 3 9 9 C 1.38224 * 119.99970 * 0.27403 * 4 3 2 10 10 C 1.38236 * 120.00183 * 359.53781 * 9 4 3 11 11 C 1.50701 * 120.00115 * 180.20887 * 10 9 4 12 12 C 1.38234 * 119.99894 * 0.41858 * 10 9 4 13 13 S 1.76198 * 120.00165 * 179.79074 * 12 10 9 14 14 O 1.42097 * 106.40214 * 200.99946 * 13 12 10 15 15 O 1.42092 * 106.40231 * 333.92034 * 13 12 10 16 16 N 1.65601 * 107.21670 * 87.46083 * 13 12 10 17 17 C 1.46502 * 120.00090 * 65.00338 * 16 13 12 18 18 C 1.50703 * 109.47173 * 165.00101 * 17 16 13 19 19 H 1.07997 * 119.99825 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99817 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47043 * 89.99834 * 22 20 18 24 24 H 1.48501 * 109.46919 * 209.99343 * 22 20 18 25 25 H 1.48498 * 109.46904 * 329.99464 * 22 20 18 26 26 H 1.08998 * 109.47156 * 96.41481 * 1 2 3 27 27 H 1.09003 * 109.47062 * 216.41298 * 1 2 3 28 28 H 1.08999 * 109.47293 * 336.41395 * 1 2 3 29 29 H 1.07997 * 120.00455 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.46578 * 60.00635 * 6 5 4 31 31 H 1.08996 * 109.47678 * 300.00374 * 6 5 4 32 32 H 1.08998 * 109.46953 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47153 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.47385 * 300.00301 * 7 5 4 35 35 H 1.09001 * 109.47201 * 60.00193 * 7 5 4 36 36 H 1.08998 * 109.46804 * 299.99701 * 8 5 4 37 37 H 1.08996 * 109.47498 * 59.99590 * 8 5 4 38 38 H 1.09008 * 109.47133 * 179.97438 * 8 5 4 39 39 H 1.08007 * 120.00290 * 179.72661 * 9 4 3 40 40 H 1.08995 * 109.47260 * 264.09694 * 11 10 9 41 41 H 1.08993 * 109.47181 * 24.09952 * 11 10 9 42 42 H 1.09003 * 109.47197 * 144.09652 * 11 10 9 43 43 H 0.96999 * 119.99929 * 244.99730 * 16 13 12 44 44 H 1.09003 * 109.47039 * 284.99844 * 17 16 13 45 45 H 1.08998 * 109.47384 * 44.99870 * 17 16 13 46 46 H 0.96999 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 3.9638 3.3044 1.2503 7 6 3.9649 3.3048 -1.2481 8 6 5.8382 2.2227 0.0010 9 6 4.2716 0.0001 -0.0047 10 6 3.5805 -1.1971 -0.0007 11 6 4.3340 -2.5022 -0.0016 12 6 2.1982 -1.1972 -0.0003 13 16 1.3172 -2.7231 -0.0009 14 8 0.0143 -2.4340 -0.4889 15 8 2.1767 -3.6824 -0.6009 16 7 1.1332 -3.1834 1.5792 17 6 0.3192 -2.3728 2.4883 18 6 0.0069 -3.1697 3.7287 19 1 0.3774 -4.1791 3.8295 20 6 -0.7526 -2.6104 4.7343 21 7 -1.2042 -1.3813 4.6113 22 14 -1.1403 -3.5985 6.2715 23 1 -0.0797 -3.3722 7.2860 24 1 -2.4506 -3.1661 6.8205 25 1 -1.1988 -5.0425 5.9301 26 1 -0.3633 -0.1148 -1.0212 27 1 -0.3633 -0.8270 0.6100 28 1 -0.3634 0.9418 0.4112 29 1 1.6581 2.1324 -0.0004 30 1 4.2269 2.7326 2.1403 31 1 2.8922 3.5035 1.2500 32 1 4.5091 4.2481 1.2509 33 1 4.5095 4.2489 -1.2475 34 1 4.2285 2.7334 -2.1381 35 1 2.8932 3.5040 -1.2485 36 1 6.1014 1.6508 0.8907 37 1 6.1015 1.6515 -0.8892 38 1 6.3832 3.1667 0.0010 39 1 5.3517 0.0000 -0.0087 40 1 4.4207 -2.8710 -1.0236 41 1 5.3295 -2.3473 0.4143 42 1 3.7969 -3.2323 0.6038 43 1 1.5644 -3.9899 1.9027 44 1 0.8690 -1.4728 2.7635 45 1 -0.6103 -2.0934 1.9924 46 1 -1.7382 -0.9878 5.3189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330497444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:56 Heat of formation + Delta-G solvation = -71.037433 kcal Electronic energy + Delta-G solvation = -26820.702733 eV Core-core repulsion = 23222.543367 eV Total energy + Delta-G solvation = -3598.159366 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.06134 -36.97151 -36.85797 -35.29428 -34.62640 -33.26213 -32.15561 -30.92401 -28.19983 -27.40284 -27.21396 -26.74069 -25.81489 -23.23777 -22.48811 -20.58973 -19.37971 -18.62312 -17.63288 -16.94331 -16.11384 -15.90161 -15.61376 -15.13100 -14.51797 -14.45408 -14.06992 -13.81197 -13.67615 -13.46682 -13.10334 -12.96971 -12.90491 -12.69124 -12.54327 -12.44924 -12.27174 -12.11689 -11.92551 -11.85702 -11.69454 -11.48642 -11.39521 -11.38014 -11.11232 -11.00145 -10.94737 -10.72981 -10.66019 -10.53689 -10.14746 -9.97036 -9.39824 -8.94962 -8.80717 -8.39562 -8.22143 -6.18528 -4.22986 0.92721 1.18429 1.51439 3.24651 3.31296 3.34475 3.51582 3.85333 4.32166 4.34902 4.39662 4.55596 4.81873 4.83068 4.91823 5.08271 5.12052 5.18535 5.33108 5.39027 5.45501 5.51806 5.58888 5.60020 5.68931 5.70559 5.72011 5.82807 5.84892 5.90501 6.01112 6.03798 6.07574 6.14652 6.15821 6.33757 6.43669 6.49335 6.55965 6.61965 6.74517 7.09163 7.28826 7.34983 7.79087 7.80860 8.17505 8.81066 9.41929 10.91743 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004317 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.330285 B = 6484.622048 C = 7415.454059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.038 3.962 3 C -0.151 4.151 4 C -0.014 4.014 5 C -0.035 4.035 6 C -0.140 4.140 7 C -0.138 4.138 8 C -0.144 4.144 9 C -0.160 4.160 10 C 0.026 3.974 11 C -0.133 4.133 12 C -0.683 4.683 13 S 2.688 3.312 14 O -0.963 6.963 15 O -0.980 6.980 16 N -1.105 6.105 17 C 0.247 3.753 18 C -0.530 4.530 19 H 0.066 0.934 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.272 1.272 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.068 0.932 29 H 0.126 0.874 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.130 0.870 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.409 0.591 44 H 0.022 0.978 45 H 0.040 0.960 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.868 8.153 -9.341 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.036 3.964 3 C -0.169 4.169 4 C -0.014 4.014 5 C -0.035 4.035 6 C -0.197 4.197 7 C -0.195 4.195 8 C -0.201 4.201 9 C -0.179 4.179 10 C 0.025 3.975 11 C -0.189 4.189 12 C -0.769 4.769 13 S 2.778 3.222 14 O -0.953 6.953 15 O -0.970 6.970 16 N -0.867 5.867 17 C 0.124 3.876 18 C -0.569 4.569 19 H 0.084 0.916 20 C -0.141 4.141 21 N -0.527 5.527 22 Si 0.730 3.270 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 H 0.106 0.894 27 H 0.120 0.880 28 H 0.087 0.913 29 H 0.144 0.856 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.099 0.901 43 H 0.244 0.756 44 H 0.039 0.961 45 H 0.057 0.943 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.356 8.037 -10.046 17.161 hybrid contribution 0.320 -0.016 1.440 1.476 sum 11.676 8.021 -8.606 16.575 Atomic orbital electron populations 1.21480 0.89404 1.04732 1.04594 1.19666 0.96369 0.91465 0.88864 1.20911 0.93516 0.97617 1.04894 1.20004 0.93630 0.94287 0.93479 1.19605 0.94983 0.92323 0.96595 1.21898 1.01935 0.99305 0.96553 1.21888 1.01846 0.99330 0.96470 1.21971 0.94210 1.01745 1.02215 1.21045 0.99941 0.91284 1.05584 1.19560 0.91477 0.96085 0.90381 1.21219 0.99796 0.93439 1.04484 1.30699 1.05439 1.20287 1.20476 1.01821 0.73666 0.73313 0.73396 1.93576 1.37528 1.85051 1.79100 1.93531 1.67765 1.59719 1.76013 1.55483 1.64793 1.36969 1.29494 1.19122 0.89521 0.90370 0.88614 1.21200 1.33749 1.00493 1.01500 0.91610 1.24959 0.95374 0.95107 0.98667 1.69935 1.35306 1.13579 1.33923 0.86429 0.77791 0.80283 0.82534 1.20533 1.21008 1.19672 0.89408 0.88015 0.91284 0.85609 0.92181 0.92067 0.92272 0.92240 0.92457 0.92174 0.92051 0.92201 0.92331 0.85236 0.89096 0.91364 0.90087 0.75650 0.96062 0.94262 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 8.33 36.01 0.30 -2.26 16 2 C 0.04 0.65 5.88 -104.63 -0.61 0.04 16 3 C -0.15 -2.23 8.34 -39.58 -0.33 -2.57 16 4 C -0.01 -0.18 4.76 -104.62 -0.50 -0.68 16 5 C -0.04 -0.36 0.85 -155.66 -0.13 -0.49 16 6 C -0.14 -1.40 8.29 37.16 0.31 -1.09 16 7 C -0.14 -1.25 8.29 37.16 0.31 -0.94 16 8 C -0.14 -1.27 7.13 37.16 0.26 -1.00 16 9 C -0.16 -2.22 8.61 -39.59 -0.34 -2.56 16 10 C 0.03 0.42 5.88 -104.62 -0.61 -0.20 16 11 C -0.13 -1.89 8.34 36.01 0.30 -1.59 16 12 C -0.68 -12.16 5.94 -39.58 -0.24 -12.40 16 13 S 2.69 51.73 4.92 -107.50 -0.53 51.20 16 14 O -0.96 -20.54 13.66 -57.18 -0.78 -21.32 16 15 O -0.98 -18.90 14.46 -57.18 -0.83 -19.73 16 16 N -1.11 -22.69 5.99 -11.65 -0.07 -22.76 16 17 C 0.25 6.08 5.24 -5.19 -0.03 6.05 16 18 C -0.53 -14.12 9.27 -34.44 -0.32 -14.44 16 19 H 0.07 1.68 7.65 -52.49 -0.40 1.27 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 22 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 26 H 0.09 1.44 7.86 -51.93 -0.41 1.03 16 27 H 0.10 2.07 3.62 -51.93 -0.19 1.88 16 28 H 0.07 1.06 8.04 -51.93 -0.42 0.65 16 29 H 0.13 1.60 7.10 -52.49 -0.37 1.23 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.63 7.39 -51.93 -0.38 0.24 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.55 7.39 -51.93 -0.38 0.16 16 36 H 0.06 0.55 7.52 -51.93 -0.39 0.16 16 37 H 0.06 0.51 7.50 -51.93 -0.39 0.12 16 38 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.13 1.46 5.90 -52.48 -0.31 1.15 16 40 H 0.09 1.25 7.84 -51.93 -0.41 0.84 16 41 H 0.07 0.78 8.05 -51.93 -0.42 0.36 16 42 H 0.08 1.22 6.16 -51.93 -0.32 0.90 16 43 H 0.41 7.64 8.54 -34.47 -0.29 7.34 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.04 1.03 6.36 -51.93 -0.33 0.70 16 46 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 LS Contribution 367.86 15.07 5.54 5.54 Total: -1.00 -30.91 367.86 -9.76 -40.67 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.09 Total: 7.61 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: -1.73 Total: -32.54 kcal Atomic # 7 Polarization: -47.78 SS G_CDS: 0.67 Total: -47.11 kcal Atomic # 8 Polarization: -39.44 SS G_CDS: -1.61 Total: -41.05 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 51.73 SS G_CDS: -0.53 Total: 51.20 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.91 -9.76 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.363 kcal (2) G-P(sol) polarization free energy of solvation -30.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds