Wall clock time and date at job start Tue Mar 31 2020 13:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38227 * 119.99675 * 2 1 4 4 C 1.38242 * 119.99675 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99836 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47320 * 59.99463 * 5 4 3 7 7 C 1.53001 * 109.47113 * 299.99740 * 5 4 3 8 8 C 1.52996 * 109.46992 * 180.02562 * 5 4 3 9 9 C 1.38224 * 119.99970 * 0.27403 * 4 3 2 10 10 C 1.38236 * 120.00183 * 359.53781 * 9 4 3 11 11 C 1.50701 * 120.00115 * 180.20887 * 10 9 4 12 12 C 1.38234 * 119.99894 * 0.41858 * 10 9 4 13 13 S 1.76198 * 120.00165 * 179.79074 * 12 10 9 14 14 O 1.42097 * 106.40214 * 200.99946 * 13 12 10 15 15 O 1.42092 * 106.40231 * 333.92034 * 13 12 10 16 16 N 1.65601 * 107.21670 * 87.46083 * 13 12 10 17 17 C 1.46502 * 120.00090 * 65.00338 * 16 13 12 18 18 C 1.50703 * 109.47173 * 165.00101 * 17 16 13 19 19 H 1.07997 * 119.99825 * 359.97438 * 18 17 16 20 20 C 1.37877 * 120.00002 * 180.02562 * 18 17 16 21 21 N 1.31518 * 119.99817 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99904 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47043 * 89.99834 * 22 20 18 24 24 H 1.48501 * 109.46919 * 209.99343 * 22 20 18 25 25 H 1.48498 * 109.46904 * 329.99464 * 22 20 18 26 26 H 1.08998 * 109.47156 * 96.41481 * 1 2 3 27 27 H 1.09003 * 109.47062 * 216.41298 * 1 2 3 28 28 H 1.08999 * 109.47293 * 336.41395 * 1 2 3 29 29 H 1.07997 * 120.00455 * 359.97438 * 3 2 1 30 30 H 1.09005 * 109.46578 * 60.00635 * 6 5 4 31 31 H 1.08996 * 109.47678 * 300.00374 * 6 5 4 32 32 H 1.08998 * 109.46953 * 179.97438 * 6 5 4 33 33 H 1.08995 * 109.47153 * 179.97438 * 7 5 4 34 34 H 1.09000 * 109.47385 * 300.00301 * 7 5 4 35 35 H 1.09001 * 109.47201 * 60.00193 * 7 5 4 36 36 H 1.08998 * 109.46804 * 299.99701 * 8 5 4 37 37 H 1.08996 * 109.47498 * 59.99590 * 8 5 4 38 38 H 1.09008 * 109.47133 * 179.97438 * 8 5 4 39 39 H 1.08007 * 120.00290 * 179.72661 * 9 4 3 40 40 H 1.08995 * 109.47260 * 264.09694 * 11 10 9 41 41 H 1.08993 * 109.47181 * 24.09952 * 11 10 9 42 42 H 1.09003 * 109.47197 * 144.09652 * 11 10 9 43 43 H 0.96999 * 119.99929 * 244.99730 * 16 13 12 44 44 H 1.09003 * 109.47039 * 284.99844 * 17 16 13 45 45 H 1.08998 * 109.47384 * 44.99870 * 17 16 13 46 46 H 0.96999 * 119.99733 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5023 0.0011 6 6 3.9638 3.3044 1.2503 7 6 3.9649 3.3048 -1.2481 8 6 5.8382 2.2227 0.0010 9 6 4.2716 0.0001 -0.0047 10 6 3.5805 -1.1971 -0.0007 11 6 4.3340 -2.5022 -0.0016 12 6 2.1982 -1.1972 -0.0003 13 16 1.3172 -2.7231 -0.0009 14 8 0.0143 -2.4340 -0.4889 15 8 2.1767 -3.6824 -0.6009 16 7 1.1332 -3.1834 1.5792 17 6 0.3192 -2.3728 2.4883 18 6 0.0069 -3.1697 3.7287 19 1 0.3774 -4.1791 3.8295 20 6 -0.7526 -2.6104 4.7343 21 7 -1.2042 -1.3813 4.6113 22 14 -1.1403 -3.5985 6.2715 23 1 -0.0797 -3.3722 7.2860 24 1 -2.4506 -3.1661 6.8205 25 1 -1.1988 -5.0425 5.9301 26 1 -0.3633 -0.1148 -1.0212 27 1 -0.3633 -0.8270 0.6100 28 1 -0.3634 0.9418 0.4112 29 1 1.6581 2.1324 -0.0004 30 1 4.2269 2.7326 2.1403 31 1 2.8922 3.5035 1.2500 32 1 4.5091 4.2481 1.2509 33 1 4.5095 4.2489 -1.2475 34 1 4.2285 2.7334 -2.1381 35 1 2.8932 3.5040 -1.2485 36 1 6.1014 1.6508 0.8907 37 1 6.1015 1.6515 -0.8892 38 1 6.3832 3.1667 0.0010 39 1 5.3517 0.0000 -0.0087 40 1 4.4207 -2.8710 -1.0236 41 1 5.3295 -2.3473 0.4143 42 1 3.7969 -3.2323 0.6038 43 1 1.5644 -3.9899 1.9027 44 1 0.8690 -1.4728 2.7635 45 1 -0.6103 -2.0934 1.9924 46 1 -1.7382 -0.9878 5.3189 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330497444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:55 Heat of formation + Delta-G solvation = -89.709958 kcal Electronic energy + Delta-G solvation = -26821.512434 eV Core-core repulsion = 23222.543367 eV Total energy + Delta-G solvation = -3598.969068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15990 -38.54277 -37.82440 -36.88558 -36.49049 -34.50389 -34.14088 -32.02445 -29.07103 -28.73242 -28.46652 -28.12642 -26.85739 -24.55804 -24.26210 -21.79885 -20.73569 -19.80974 -19.32871 -18.37579 -17.72554 -17.46908 -16.85386 -16.58275 -16.15618 -15.43125 -15.28696 -15.14029 -14.79956 -14.67302 -14.58006 -14.30517 -14.15352 -14.09732 -13.99406 -13.71464 -13.65340 -13.30376 -13.24078 -13.07366 -12.82071 -12.75531 -12.61565 -12.55024 -12.45377 -12.39638 -12.13381 -12.09239 -12.02453 -11.84181 -11.48351 -11.40165 -11.25101 -10.84449 -10.13936 -10.02662 -9.59304 -8.25085 -6.37451 -0.51189 -0.14715 0.31644 1.43995 1.45126 1.56136 2.11455 2.40354 2.48150 2.82282 3.09588 3.38757 3.48280 3.65922 3.72180 4.02463 4.07537 4.21519 4.25142 4.33393 4.42351 4.51899 4.60135 4.72190 4.73986 4.74793 4.75608 4.77959 4.88297 4.89250 5.00864 5.02170 5.07462 5.16990 5.21036 5.22229 5.26173 5.26408 5.34485 5.41451 5.42054 5.45043 5.57264 5.73836 5.92192 5.97831 6.29995 6.76397 7.32099 8.85905 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004317 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.330285 B = 6484.622048 C = 7415.454059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.015 3.985 3 C -0.155 4.155 4 C -0.008 4.008 5 C -0.034 4.034 6 C -0.140 4.140 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.158 4.158 10 C 0.015 3.985 11 C -0.137 4.137 12 C -0.701 4.701 13 S 2.698 3.302 14 O -0.990 6.990 15 O -0.982 6.982 16 N -1.106 6.106 17 C 0.264 3.736 18 C -0.552 4.552 19 H 0.073 0.927 20 C 0.011 3.989 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.270 1.270 24 H -0.282 1.282 25 H -0.264 1.264 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.047 0.953 31 H 0.054 0.946 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.066 0.934 43 H 0.416 0.584 44 H 0.005 0.995 45 H 0.016 0.984 46 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.137 9.150 -9.092 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 C -0.174 4.174 4 C -0.008 4.008 5 C -0.034 4.034 6 C -0.198 4.198 7 C -0.194 4.194 8 C -0.202 4.202 9 C -0.176 4.176 10 C 0.013 3.987 11 C -0.194 4.194 12 C -0.791 4.791 13 S 2.792 3.208 14 O -0.980 6.980 15 O -0.972 6.972 16 N -0.867 5.867 17 C 0.139 3.861 18 C -0.591 4.591 19 H 0.092 0.908 20 C -0.189 4.189 21 N -0.562 5.562 22 Si 0.795 3.205 23 H -0.196 1.196 24 H -0.207 1.207 25 H -0.188 1.188 26 H 0.109 0.891 27 H 0.088 0.912 28 H 0.102 0.898 29 H 0.162 0.838 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.178 0.822 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.085 0.915 43 H 0.251 0.749 44 H 0.023 0.977 45 H 0.034 0.966 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 13.619 8.982 -9.806 19.034 hybrid contribution -0.310 -0.232 1.291 1.348 sum 13.309 8.750 -8.515 18.061 Atomic orbital electron populations 1.21418 0.90377 1.04149 1.04304 1.19760 0.96065 0.92433 0.90397 1.21154 0.94507 0.97331 1.04412 1.20476 0.93278 0.95956 0.91113 1.19708 0.95720 0.90654 0.97335 1.21916 1.01896 1.00127 0.95825 1.21893 1.01968 1.00019 0.95560 1.21990 0.92888 1.02919 1.02383 1.21439 1.01504 0.90525 1.04182 1.19878 0.90790 0.97752 0.90236 1.21304 1.01102 0.92306 1.04673 1.30354 1.06429 1.19025 1.23256 1.01294 0.73204 0.73758 0.72578 1.93540 1.39479 1.85604 1.79389 1.93522 1.67491 1.60505 1.75686 1.55333 1.64684 1.37213 1.29446 1.18665 0.88758 0.90107 0.88548 1.21625 1.34017 1.01106 1.02381 0.90844 1.25866 0.95061 0.96106 1.01909 1.70057 1.35915 1.15161 1.35069 0.85358 0.77670 0.78952 0.78504 1.19582 1.20717 1.18848 0.89054 0.91178 0.89806 0.83834 0.93363 0.92726 0.90053 0.90197 0.92591 0.92562 0.92230 0.91658 0.90481 0.82152 0.88784 0.88164 0.91518 0.74851 0.97707 0.96614 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 8.33 71.24 0.59 -4.79 16 2 C 0.01 0.53 5.88 -19.87 -0.12 0.41 16 3 C -0.16 -4.50 8.34 22.27 0.19 -4.31 16 4 C -0.01 -0.20 4.76 -19.87 -0.09 -0.29 16 5 C -0.03 -0.60 0.85 -52.93 -0.05 -0.65 16 6 C -0.14 -2.46 8.29 71.98 0.60 -1.86 16 7 C -0.14 -2.06 8.29 71.98 0.60 -1.47 16 8 C -0.14 -2.01 7.13 71.98 0.51 -1.49 16 9 C -0.16 -4.04 8.61 22.27 0.19 -3.85 16 10 C 0.02 0.46 5.88 -19.87 -0.12 0.35 16 11 C -0.14 -3.72 8.34 71.24 0.59 -3.13 16 12 C -0.70 -25.41 5.94 22.27 0.13 -25.28 16 13 S 2.70 107.76 4.92 -56.49 -0.28 107.48 16 14 O -0.99 -44.53 13.66 -128.00 -1.75 -46.28 16 15 O -0.98 -38.48 14.46 -128.00 -1.85 -40.33 16 16 N -1.11 -47.17 5.99 -190.78 -1.14 -48.32 16 17 C 0.26 13.57 5.24 85.63 0.45 14.01 16 18 C -0.55 -30.00 9.27 25.60 0.24 -29.77 16 19 H 0.07 3.77 7.65 -2.91 -0.02 3.74 16 20 C 0.01 0.59 5.46 84.65 0.46 1.05 16 21 N -0.92 -53.17 13.29 21.45 0.28 -52.89 16 22 Si 0.97 42.41 29.54 68.60 2.03 44.44 16 23 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 26 H 0.09 3.17 7.86 -2.39 -0.02 3.15 16 27 H 0.07 3.06 3.62 -2.39 -0.01 3.05 16 28 H 0.08 2.70 8.04 -2.39 -0.02 2.68 16 29 H 0.14 3.51 7.10 -2.91 -0.02 3.49 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.05 1.02 7.39 -2.39 -0.02 1.00 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.89 7.39 -2.39 -0.02 0.87 16 36 H 0.06 0.86 7.52 -2.39 -0.02 0.84 16 37 H 0.06 0.85 7.50 -2.39 -0.02 0.83 16 38 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 39 H 0.16 3.04 5.90 -2.91 -0.02 3.02 16 40 H 0.09 2.47 7.84 -2.39 -0.02 2.45 16 41 H 0.10 2.01 8.05 -2.39 -0.02 1.99 16 42 H 0.07 1.99 6.16 -2.39 -0.01 1.98 16 43 H 0.42 16.02 8.54 -96.75 -0.83 15.19 16 44 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.02 0.89 6.36 -2.39 -0.02 0.88 16 46 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -67.39 367.86 1.63 -65.76 By element: Atomic # 1 Polarization: 31.04 SS G_CDS: 0.16 Total: 31.20 kcal Atomic # 6 Polarization: -65.24 SS G_CDS: 4.18 Total: -61.06 kcal Atomic # 7 Polarization: -100.34 SS G_CDS: -0.86 Total: -101.20 kcal Atomic # 8 Polarization: -83.01 SS G_CDS: -3.60 Total: -86.61 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 107.76 SS G_CDS: -0.28 Total: 107.48 kcal Total: -67.39 1.63 -65.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330497444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.949 kcal (2) G-P(sol) polarization free energy of solvation -67.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds