Wall clock time and date at job start Tue Mar 31 2020 14:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 C 1.52992 * 109.47434 * 239.99307 * 2 1 3 5 5 C 1.50701 * 109.46682 * 60.00309 * 4 2 1 6 6 H 1.08000 * 120.00395 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00012 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00062 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00284 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47232 * 59.99426 * 9 7 5 11 11 H 1.48493 * 109.47287 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46934 * 299.99929 * 9 7 5 13 13 C 1.53011 * 109.46767 * 119.99538 * 2 1 3 14 14 N 1.46490 * 109.47257 * 299.99877 * 13 2 1 15 15 C 1.30689 * 119.99998 * 114.25546 * 14 13 2 16 16 C 1.46951 * 120.08833 * 353.49756 * 15 14 13 17 17 C 1.35042 * 119.43562 * 179.97438 * 16 15 14 18 18 C 1.46557 * 119.51603 * 0.02562 * 17 16 15 19 19 N 1.31698 * 132.90461 * 180.02562 * 18 17 16 20 20 N 1.28677 * 109.38431 * 179.97438 * 19 18 17 21 21 C 1.30975 * 110.06173 * 0.02562 * 20 19 18 22 22 C 1.50695 * 126.24702 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47114 * 29.96876 * 22 21 20 24 24 F 1.39897 * 109.47828 * 149.96963 * 22 21 20 25 25 N 1.35017 * 107.51519 * 359.97438 * 21 20 19 26 26 N 1.38155 * 120.09301 * 173.52385 * 15 14 13 27 27 H 0.97003 * 119.83012 * 359.95296 * 26 15 14 28 28 H 1.08999 * 109.46903 * 300.00521 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00243 * 1 2 3 30 30 H 1.08992 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47146 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47055 * 299.99519 * 3 2 1 33 33 H 1.08999 * 109.47559 * 59.99881 * 3 2 1 34 34 H 1.09003 * 109.47472 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47491 * 300.00776 * 4 2 1 36 36 H 0.97009 * 120.00396 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46634 * 180.02562 * 13 2 1 38 38 H 1.09000 * 109.46670 * 60.00135 * 13 2 1 39 39 H 1.07998 * 120.28087 * 0.26362 * 16 15 14 40 40 H 1.07999 * 120.23955 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.47100 * 269.97652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7318 8 7 2.6274 -1.5511 -3.8524 9 14 1.2493 0.3991 -5.2571 10 1 1.7443 1.7992 -5.2566 11 1 1.7442 -0.3010 -6.4695 12 1 -0.2357 0.3992 -5.2577 13 6 2.0400 -0.7212 1.2494 14 7 1.5517 -0.0305 2.4454 15 6 0.7104 -0.6281 3.2474 16 6 0.1428 -1.9329 2.8803 17 6 -0.7248 -2.5389 3.7191 18 6 -1.0859 -1.8854 4.9802 19 7 -1.8842 -2.2267 5.9705 20 7 -1.8671 -1.3063 6.8695 21 6 -1.0653 -0.3369 6.5049 22 6 -0.7740 0.9193 7.2846 23 9 -0.8868 0.6550 8.6538 24 9 0.5244 1.3549 6.9992 25 7 -0.5465 -0.6690 5.3035 26 7 0.3519 -0.0347 4.4424 27 1 0.7268 0.8265 4.6851 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 -0.7210 -1.2493 35 1 1.6767 -1.7490 -1.2491 36 1 2.8624 -1.8821 -4.7335 37 1 3.1300 -0.7208 1.2496 38 1 1.6766 -1.7489 1.2494 39 1 0.4208 -2.4054 1.9498 40 1 -1.1495 -3.4982 3.4625 41 1 -1.4872 1.6945 7.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340939249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:14 Heat of formation + Delta-G solvation = 59.586058 kcal Electronic energy + Delta-G solvation = -27354.981614 eV Core-core repulsion = 23137.398529 eV Total energy + Delta-G solvation = -4217.583086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.76268 -47.77978 -43.85673 -39.28859 -37.31280 -34.99817 -34.03090 -32.43716 -31.74312 -30.56782 -27.44276 -27.13525 -26.54835 -26.20552 -24.28972 -23.52566 -22.85869 -21.99895 -19.55902 -18.95784 -18.46306 -17.89608 -17.56633 -17.33602 -16.88188 -16.65660 -16.32499 -15.96969 -14.78855 -14.58857 -14.26178 -14.13366 -14.05205 -13.89207 -13.53945 -13.40665 -13.24365 -12.80120 -12.52489 -12.34223 -12.12866 -12.07925 -11.86043 -11.29466 -11.22234 -11.07009 -10.99958 -10.88318 -10.62598 -10.52938 -10.27416 -9.90216 -9.52096 -9.46853 -9.12676 -9.01333 -8.40393 -8.20273 -6.05074 -4.05898 0.19936 0.41814 1.08826 2.06574 2.29965 2.84340 2.96133 3.28361 3.28851 3.34171 3.36083 3.63993 3.80958 4.00553 4.05910 4.40871 4.53568 4.63505 4.77614 4.99210 5.18596 5.31214 5.51417 5.54502 5.61354 5.64461 5.81961 5.99498 6.22392 6.30768 6.48922 6.55964 6.60036 6.67977 6.70351 7.03891 7.11595 7.13005 7.56271 7.68901 7.75954 7.82133 7.93740 8.36947 8.98485 9.57540 11.06302 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002568 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.731232 B =10900.181455 C =11388.829586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.055 4.055 3 C -0.118 4.118 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.068 3.932 14 N -0.534 5.534 15 C 0.388 3.612 16 C -0.121 4.121 17 C -0.047 4.047 18 C 0.206 3.794 19 N -0.243 5.243 20 N -0.223 5.223 21 C 0.092 3.908 22 C 0.374 3.626 23 F -0.168 7.168 24 F -0.189 7.189 25 N -0.233 5.233 26 N -0.500 5.500 27 H 0.443 0.557 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.039 0.961 34 H 0.018 0.982 35 H 0.015 0.985 36 H 0.260 0.740 37 H 0.089 0.911 38 H 0.048 0.952 39 H 0.178 0.822 40 H 0.170 0.830 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.257 2.456 19.945 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.056 4.056 3 C -0.176 4.176 4 C -0.003 4.003 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.061 4.061 14 N -0.256 5.256 15 C 0.112 3.888 16 C -0.147 4.147 17 C -0.072 4.072 18 C -0.055 4.055 19 N -0.089 5.089 20 N -0.070 5.070 21 C -0.174 4.174 22 C 0.318 3.682 23 F -0.149 7.149 24 F -0.171 7.171 25 N -0.008 5.008 26 N -0.242 5.242 27 H 0.289 0.711 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.036 0.964 35 H 0.033 0.967 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.195 0.805 40 H 0.188 0.812 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.608 2.343 20.515 21.680 hybrid contribution 0.548 0.740 -1.668 1.905 sum -6.060 3.084 18.847 20.036 Atomic orbital electron populations 1.21760 0.95741 1.00382 1.00545 1.20730 0.94963 0.96294 0.93592 1.21626 0.99993 0.95641 1.00308 1.19138 0.96305 0.94996 0.89842 1.21149 1.31136 1.12072 0.90512 0.92370 1.24995 0.95288 0.95071 0.99050 1.69942 1.36984 1.23074 1.23574 0.86720 0.79170 0.79851 0.82644 1.20292 1.21360 1.20328 1.22536 1.00270 0.95593 0.87701 1.71846 1.13523 1.33351 1.06848 1.19793 0.94654 0.88976 0.85384 1.23361 0.96369 0.93789 1.01174 1.21324 0.98027 1.00482 0.87398 1.23616 0.97864 0.84566 0.99478 1.74869 1.16772 1.18833 0.98390 1.74648 1.15066 0.97648 1.19615 1.25109 1.02639 1.03032 0.86624 1.19415 0.82596 0.89553 0.76683 1.93110 1.95936 1.94969 1.30918 1.93057 1.40785 1.90072 1.93157 1.44983 1.28357 1.15346 1.12122 1.43133 1.43769 1.23109 1.14226 0.71097 0.95235 0.91531 0.94011 0.93816 0.92303 0.94213 0.96415 0.96672 0.92983 0.89256 0.93403 0.80546 0.81219 0.83403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.05 37.16 0.30 -1.92 16 2 C -0.06 -1.01 0.60 -154.51 -0.09 -1.11 16 3 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 4 C 0.03 0.81 4.04 -27.89 -0.11 0.70 16 5 C -0.51 -13.28 7.65 -34.44 -0.26 -13.54 16 6 H 0.06 1.48 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -25.71 13.29 55.43 0.74 -24.97 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.07 1.05 5.08 -4.04 -0.02 1.02 16 14 N -0.53 -7.45 9.15 -58.65 -0.54 -7.99 16 15 C 0.39 4.67 7.66 -154.09 -1.18 3.49 16 16 C -0.12 -1.25 9.33 -37.19 -0.35 -1.60 16 17 C -0.05 -0.45 10.29 -37.37 -0.38 -0.83 16 18 C 0.21 2.40 8.17 -154.58 -1.26 1.14 16 19 N -0.24 -3.17 12.29 32.24 0.40 -2.78 16 20 N -0.22 -2.82 12.15 32.78 0.40 -2.42 16 21 C 0.09 0.96 7.77 -155.04 -1.20 -0.24 16 22 C 0.37 2.65 5.86 36.00 0.21 2.86 16 23 F -0.17 -1.47 17.28 2.25 0.04 -1.43 16 24 F -0.19 -1.50 16.03 2.25 0.04 -1.46 16 25 N -0.23 -2.57 3.98 -8.29 -0.03 -2.61 16 26 N -0.50 -5.35 6.62 32.36 0.21 -5.14 16 27 H 0.44 4.15 7.81 -182.92 -1.43 2.72 16 28 H 0.03 0.47 7.42 -51.93 -0.39 0.08 16 29 H 0.07 1.29 6.62 -51.93 -0.34 0.94 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 1.16 6.62 -51.93 -0.34 0.82 16 33 H 0.04 0.67 7.60 -51.93 -0.39 0.27 16 34 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.67 5.20 -51.93 -0.27 0.40 16 39 H 0.18 1.70 5.88 -52.49 -0.31 1.39 16 40 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.15 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 347.71 15.07 5.24 5.24 Total: -1.00 -31.14 347.71 -8.55 -39.70 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.87 Total: -1.56 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: -4.16 Total: -10.45 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 1.18 Total: -45.91 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.08 Total: -2.89 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.14 -8.55 -39.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.282 kcal (2) G-P(sol) polarization free energy of solvation -31.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds