Wall clock time and date at job start Tue Mar 31 2020 14:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47318 * 2 1 4 4 C 1.52992 * 109.47434 * 239.99307 * 2 1 3 5 5 C 1.50701 * 109.46682 * 60.00309 * 4 2 1 6 6 H 1.08000 * 120.00395 * 359.97438 * 5 4 2 7 7 C 1.37876 * 120.00012 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00062 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00284 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47232 * 59.99426 * 9 7 5 11 11 H 1.48493 * 109.47287 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46934 * 299.99929 * 9 7 5 13 13 C 1.53011 * 109.46767 * 119.99538 * 2 1 3 14 14 N 1.46490 * 109.47257 * 299.99877 * 13 2 1 15 15 C 1.30689 * 119.99998 * 114.25546 * 14 13 2 16 16 C 1.46951 * 120.08833 * 353.49756 * 15 14 13 17 17 C 1.35042 * 119.43562 * 179.97438 * 16 15 14 18 18 C 1.46557 * 119.51603 * 0.02562 * 17 16 15 19 19 N 1.31698 * 132.90461 * 180.02562 * 18 17 16 20 20 N 1.28677 * 109.38431 * 179.97438 * 19 18 17 21 21 C 1.30975 * 110.06173 * 0.02562 * 20 19 18 22 22 C 1.50695 * 126.24702 * 180.02562 * 21 20 19 23 23 F 1.39905 * 109.47114 * 29.96876 * 22 21 20 24 24 F 1.39897 * 109.47828 * 149.96963 * 22 21 20 25 25 N 1.35017 * 107.51519 * 359.97438 * 21 20 19 26 26 N 1.38155 * 120.09301 * 173.52385 * 15 14 13 27 27 H 0.97003 * 119.83012 * 359.95296 * 26 15 14 28 28 H 1.08999 * 109.46903 * 300.00521 * 1 2 3 29 29 H 1.09001 * 109.46665 * 60.00243 * 1 2 3 30 30 H 1.08992 * 109.47097 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47146 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47055 * 299.99519 * 3 2 1 33 33 H 1.08999 * 109.47559 * 59.99881 * 3 2 1 34 34 H 1.09003 * 109.47472 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47491 * 300.00776 * 4 2 1 36 36 H 0.97009 * 120.00396 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.46634 * 180.02562 * 13 2 1 38 38 H 1.09000 * 109.46670 * 60.00135 * 13 2 1 39 39 H 1.07998 * 120.28087 * 0.26362 * 16 15 14 40 40 H 1.07999 * 120.23955 * 180.02562 * 17 16 15 41 41 H 1.08999 * 109.47100 * 269.97652 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8669 -2.3806 7 6 1.8713 -0.4818 -3.7318 8 7 2.6274 -1.5511 -3.8524 9 14 1.2493 0.3991 -5.2571 10 1 1.7443 1.7992 -5.2566 11 1 1.7442 -0.3010 -6.4695 12 1 -0.2357 0.3992 -5.2577 13 6 2.0400 -0.7212 1.2494 14 7 1.5517 -0.0305 2.4454 15 6 0.7104 -0.6281 3.2474 16 6 0.1428 -1.9329 2.8803 17 6 -0.7248 -2.5389 3.7191 18 6 -1.0859 -1.8854 4.9802 19 7 -1.8842 -2.2267 5.9705 20 7 -1.8671 -1.3063 6.8695 21 6 -1.0653 -0.3369 6.5049 22 6 -0.7740 0.9193 7.2846 23 9 -0.8868 0.6550 8.6538 24 9 0.5244 1.3549 6.9992 25 7 -0.5465 -0.6690 5.3035 26 7 0.3519 -0.0347 4.4424 27 1 0.7268 0.8265 4.6851 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4424 0.0005 32 1 1.6768 1.9562 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 3.1301 -0.7210 -1.2493 35 1 1.6767 -1.7490 -1.2491 36 1 2.8624 -1.8821 -4.7335 37 1 3.1300 -0.7208 1.2496 38 1 1.6766 -1.7489 1.2494 39 1 0.4208 -2.4054 1.9498 40 1 -1.1495 -3.4982 3.4625 41 1 -1.4872 1.6945 7.0043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340939249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:13 Heat of formation + Delta-G solvation = 42.051545 kcal Electronic energy + Delta-G solvation = -27355.741968 eV Core-core repulsion = 23137.398529 eV Total energy + Delta-G solvation = -4218.343439 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.36396 -48.39184 -44.72889 -40.28362 -38.62409 -36.09183 -35.03811 -34.24493 -32.62581 -31.56027 -28.99201 -28.17049 -27.95355 -27.45965 -25.14429 -25.13170 -23.78165 -23.10832 -20.43838 -19.94483 -19.17770 -19.04251 -18.31917 -18.27300 -18.08837 -17.70099 -17.53316 -16.96404 -16.49253 -15.66847 -15.29746 -15.19775 -14.89631 -14.72500 -14.65170 -14.50650 -14.25411 -14.01470 -13.90777 -13.63137 -13.37490 -13.01563 -12.90661 -12.79305 -12.71718 -12.57674 -12.29510 -12.27394 -12.13712 -12.03791 -11.77068 -11.44743 -11.01921 -10.89610 -10.47962 -10.34846 -10.28273 -9.22708 -8.12559 -6.18663 -0.63548 -0.45652 0.23192 1.16183 1.42543 1.43151 1.50539 1.57607 1.95819 2.17840 2.44847 2.72808 2.88583 3.04259 3.17609 3.21852 3.57861 3.67648 3.80672 3.92835 4.04176 4.20841 4.23462 4.35298 4.52601 4.71184 4.76775 4.86038 4.87925 4.92831 5.03032 5.15301 5.19619 5.48937 5.51508 5.53991 5.59718 5.71953 5.78732 5.86287 5.93352 6.35850 6.77963 6.93441 6.95742 7.48385 8.98869 Molecular weight = 325.14amu Principal moments of inertia in cm(-1) A = 0.026218 B = 0.002568 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.731232 B =10900.181455 C =11388.829586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.051 4.051 3 C -0.111 4.111 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.061 0.939 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.949 3.051 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.269 1.269 13 C 0.078 3.922 14 N -0.559 5.559 15 C 0.399 3.601 16 C -0.136 4.136 17 C -0.027 4.027 18 C 0.195 3.805 19 N -0.264 5.264 20 N -0.250 5.250 21 C 0.102 3.898 22 C 0.374 3.626 23 F -0.178 7.178 24 F -0.193 7.193 25 N -0.238 5.238 26 N -0.492 5.492 27 H 0.449 0.551 28 H 0.046 0.954 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.035 0.965 32 H 0.039 0.961 33 H 0.057 0.943 34 H -0.011 1.011 35 H -0.003 1.003 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.185 0.815 40 H 0.201 0.799 41 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.539 3.233 20.956 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.168 4.168 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.080 0.920 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.775 3.225 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.194 1.194 13 C -0.051 4.051 14 N -0.282 5.282 15 C 0.124 3.876 16 C -0.162 4.162 17 C -0.051 4.051 18 C -0.067 4.067 19 N -0.109 5.109 20 N -0.095 5.095 21 C -0.165 4.165 22 C 0.318 3.682 23 F -0.159 7.159 24 F -0.174 7.174 25 N -0.013 5.013 26 N -0.234 5.234 27 H 0.297 0.703 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.008 0.992 35 H 0.016 0.984 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.202 0.798 40 H 0.218 0.782 41 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -7.916 3.134 21.567 23.187 hybrid contribution 0.900 0.474 -1.812 2.078 sum -7.016 3.608 19.755 21.272 Atomic orbital electron populations 1.21631 0.94720 1.00824 1.00240 1.20546 0.95671 0.95949 0.92997 1.21534 0.99470 0.95644 1.00148 1.19000 0.94421 0.94425 0.91798 1.21554 1.30317 1.11911 0.91543 0.92041 1.25804 0.95719 0.95852 1.02207 1.70069 1.38612 1.24714 1.24081 0.85742 0.78953 0.78785 0.79027 1.19699 1.21394 1.19398 1.22212 0.99766 0.95993 0.87164 1.71806 1.15669 1.33646 1.07105 1.20013 0.93285 0.89314 0.85023 1.23392 0.97373 0.93469 1.02004 1.21690 0.96600 1.01018 0.85804 1.24007 0.97807 0.84930 0.99955 1.74810 1.17599 1.19488 0.98972 1.74594 1.16446 0.98382 1.20084 1.25779 1.01178 1.03329 0.86254 1.20026 0.83311 0.89168 0.75692 1.93091 1.95986 1.95039 1.31786 1.93051 1.41410 1.89871 1.93109 1.45077 1.28445 1.15397 1.12381 1.43077 1.43355 1.23134 1.13807 0.70303 0.93459 0.93690 0.93233 0.94548 0.94207 0.92387 0.99216 0.98439 0.93137 0.90262 0.92043 0.79777 0.78179 0.78507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 8.05 71.98 0.58 -3.36 16 2 C -0.05 -1.86 0.60 -52.18 -0.03 -1.89 16 3 C -0.11 -4.03 8.06 71.98 0.58 -3.45 16 4 C 0.04 1.96 4.04 29.85 0.12 2.08 16 5 C -0.52 -27.09 7.65 25.60 0.20 -26.89 16 6 H 0.06 3.14 5.68 -2.91 -0.02 3.12 16 7 C 0.00 0.08 5.46 84.65 0.46 0.54 16 8 N -0.93 -54.60 13.29 21.45 0.28 -54.31 16 9 Si 0.95 42.99 29.54 68.60 2.03 45.02 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 C 0.08 2.35 5.08 86.38 0.44 2.78 16 14 N -0.56 -14.67 9.15 -339.46 -3.10 -17.78 16 15 C 0.40 8.76 7.66 135.92 1.04 9.80 16 16 C -0.14 -2.50 9.33 23.82 0.22 -2.28 16 17 C -0.03 -0.43 10.29 23.71 0.24 -0.19 16 18 C 0.19 4.14 8.17 135.92 1.11 5.25 16 19 N -0.26 -6.50 12.29 -51.93 -0.64 -7.14 16 20 N -0.25 -5.95 12.15 -50.21 -0.61 -6.56 16 21 C 0.10 1.92 7.77 138.00 1.07 2.99 16 22 C 0.37 4.31 5.86 71.23 0.42 4.73 16 23 F -0.18 -2.76 17.28 44.97 0.78 -1.98 16 24 F -0.19 -2.59 16.03 44.97 0.72 -1.87 16 25 N -0.24 -4.73 3.98 -180.13 -0.72 -5.44 16 26 N -0.49 -9.38 6.62 -51.54 -0.34 -9.72 16 27 H 0.45 7.34 7.81 -213.59 -1.67 5.67 16 28 H 0.05 1.41 7.42 -2.39 -0.02 1.40 16 29 H 0.04 1.69 6.62 -2.39 -0.02 1.68 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 33 H 0.06 1.88 7.60 -2.39 -0.02 1.86 16 34 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 35 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 36 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.06 1.64 5.20 -2.39 -0.01 1.63 16 39 H 0.19 3.13 5.88 -2.91 -0.02 3.11 16 40 H 0.20 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.20 0.39 8.14 -2.39 -0.02 0.37 16 Total: -1.00 -67.89 347.71 4.28 -63.61 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -0.57 Total: 6.07 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 6.45 Total: -9.90 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -5.13 Total: -100.95 kcal Atomic # 9 Polarization: -5.35 SS G_CDS: 1.50 Total: -3.85 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -67.89 4.28 -63.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340939249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.663 kcal (2) G-P(sol) polarization free energy of solvation -67.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds