Wall clock time and date at job start Tue Mar 31 2020 15:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 C 1.53009 * 109.47102 * 120.00064 * 2 1 3 5 5 C 1.53003 * 109.46968 * 64.99801 * 4 2 1 6 6 S 1.81394 * 109.46862 * 180.02562 * 5 4 2 7 7 C 1.81400 * 102.99947 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47434 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99548 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99759 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00646 * 0.02562 * 10 8 7 12 12 C 1.50695 * 109.47443 * 270.00265 * 11 10 8 13 13 H 1.08001 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00480 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00447 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99662 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46974 * 90.00094 * 16 14 12 18 18 H 1.48500 * 109.47191 * 210.00006 * 16 14 12 19 19 H 1.48501 * 109.47289 * 330.00624 * 16 14 12 20 20 C 1.46505 * 119.99455 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47064 * 90.00114 * 20 10 8 22 22 C 1.34515 * 125.79060 * 89.99944 * 21 20 10 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69282 * 21 20 10 26 26 H 1.08999 * 109.47028 * 60.00064 * 1 2 3 27 27 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47164 * 300.00315 * 1 2 3 29 29 H 1.09000 * 109.47164 * 239.99684 * 2 1 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47700 * 299.99918 * 3 2 1 32 32 H 1.09000 * 109.47218 * 59.99717 * 3 2 1 33 33 H 1.09001 * 109.46554 * 304.99848 * 4 2 1 34 34 H 1.08992 * 109.47263 * 184.99765 * 4 2 1 35 35 H 1.09000 * 109.46940 * 59.99791 * 5 4 2 36 36 H 1.09001 * 109.47086 * 300.00208 * 5 4 2 37 37 H 1.09006 * 109.47044 * 60.00194 * 7 6 5 38 38 H 1.08999 * 109.47537 * 300.00568 * 7 6 5 39 39 H 1.09006 * 109.46911 * 30.00087 * 11 10 8 40 40 H 1.08996 * 109.47170 * 149.99599 * 11 10 8 41 41 H 0.97003 * 120.00287 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.47068 * 210.00083 * 20 10 8 43 43 H 1.09001 * 109.47372 * 330.00170 * 20 10 8 44 44 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 45 45 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 46 46 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1880 6 16 2.2391 -3.0505 2.6694 7 6 1.6702 -4.7544 2.4176 8 6 2.1016 -5.6057 3.5841 9 8 2.7305 -5.1113 4.4957 10 7 1.7886 -6.9162 3.6140 11 6 1.0294 -7.5135 2.5126 12 6 -0.4452 -7.4128 2.8062 13 1 -0.7832 -6.9505 3.7219 14 6 -1.3630 -7.9108 1.9059 15 7 -2.6499 -7.8225 2.1618 16 14 -0.7785 -8.7097 0.3217 17 1 -0.5799 -10.1644 0.5449 18 1 -1.7964 -8.5063 -0.7402 19 1 0.5056 -8.0938 -0.0989 20 6 2.2075 -7.7435 4.7482 21 6 1.1367 -7.7218 5.8085 22 6 0.1050 -8.5798 5.9023 23 6 -0.6458 -8.1950 7.0368 24 6 -0.0278 -7.1252 7.5687 25 8 1.0540 -6.8458 6.8232 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3002 36 1 0.5488 -2.2724 1.1421 37 1 2.1040 -5.1504 1.4993 38 1 0.5830 -4.7670 2.3407 39 1 1.2528 -6.9822 1.5874 40 1 1.3080 -8.5618 2.4059 41 1 -3.2956 -8.1725 1.5282 42 1 2.3649 -8.7683 4.4119 43 1 3.1361 -7.3501 5.1616 44 1 -0.1082 -9.4049 5.2390 45 1 -1.5434 -8.6690 7.4056 46 1 -0.3453 -6.5849 8.4483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343873715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:44 Heat of formation + Delta-G solvation = -33.635263 kcal Electronic energy + Delta-G solvation = -25433.096435 eV Core-core repulsion = 21836.558948 eV Total energy + Delta-G solvation = -3596.537487 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.90697 -39.15915 -36.97694 -35.36653 -32.70645 -32.32455 -31.04976 -30.68335 -28.94523 -27.96338 -27.31579 -25.11371 -23.74364 -22.63129 -21.09141 -20.23818 -20.03549 -18.68884 -17.30901 -16.78810 -16.46144 -16.15814 -15.64157 -15.52805 -15.05232 -14.92009 -14.36701 -14.26622 -14.11178 -13.88012 -13.38459 -13.04895 -12.80501 -12.55781 -12.45623 -12.38116 -12.19540 -12.17931 -12.01151 -11.97262 -11.87171 -11.55405 -11.28001 -11.08666 -10.87718 -10.79431 -10.72695 -10.62614 -10.37059 -9.73994 -9.58347 -9.38381 -9.21432 -8.78198 -8.11180 -7.78963 -7.32894 -6.25178 -4.27247 1.76852 2.28278 2.85085 3.09041 3.10708 3.17306 3.20759 3.26938 3.65309 3.89006 4.20133 4.64416 4.71044 4.80397 4.99849 5.07497 5.09395 5.25490 5.31518 5.45314 5.46940 5.50168 5.51521 5.55651 5.63992 5.65670 5.75724 5.81006 5.87231 5.89162 5.90177 5.91215 6.02404 6.21219 6.24580 6.28013 6.41106 6.49935 6.58765 6.67584 7.09415 7.15266 7.35876 7.75371 7.94361 8.32012 8.69777 8.86348 9.32662 10.86976 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.003806 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.063422 B = 7354.669923 C = 8969.858669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.095 4.095 5 C -0.106 4.106 6 S -0.203 6.203 7 C -0.114 4.114 8 C 0.539 3.461 9 O -0.539 6.539 10 N -0.586 5.586 11 C 0.206 3.794 12 C -0.538 4.538 13 H 0.083 0.917 14 C 0.079 3.921 15 N -0.886 5.886 16 Si 0.866 3.134 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.265 1.265 20 C 0.204 3.796 21 C -0.026 4.026 22 C -0.169 4.169 23 C -0.213 4.213 24 C -0.054 4.054 25 O -0.170 6.170 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.034 0.966 40 H 0.032 0.968 41 H 0.266 0.734 42 H 0.104 0.896 43 H 0.090 0.910 44 H 0.147 0.853 45 H 0.141 0.859 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 7.495 -1.818 10.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.134 4.134 5 C -0.255 4.255 6 S 0.023 5.977 7 C -0.264 4.264 8 C 0.325 3.675 9 O -0.417 6.417 10 N -0.318 5.318 11 C 0.085 3.915 12 C -0.576 4.576 13 H 0.101 0.899 14 C -0.125 4.125 15 N -0.524 5.524 16 Si 0.693 3.307 17 H -0.199 1.199 18 H -0.209 1.209 19 H -0.190 1.190 20 C 0.081 3.919 21 C -0.078 4.078 22 C -0.189 4.189 23 C -0.232 4.232 24 C -0.122 4.122 25 O -0.066 6.066 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.052 0.948 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.122 0.878 43 H 0.108 0.892 44 H 0.165 0.835 45 H 0.159 0.841 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 8.311 8.323 -0.534 11.774 hybrid contribution -1.307 -1.354 -2.031 2.769 sum 7.004 6.969 -2.565 10.208 Atomic orbital electron populations 1.21924 0.95083 1.02215 1.01717 1.21121 0.96103 0.96058 0.97983 1.21829 1.00941 0.95861 1.01755 1.21347 1.01524 0.92067 0.98469 1.23556 1.04191 0.98663 0.99059 1.87148 1.74877 1.05601 1.30036 1.23514 1.07056 0.94554 1.01300 1.19530 0.79078 0.82156 0.86719 1.90678 1.40877 1.71986 1.38134 1.47912 1.54552 1.07974 1.21357 1.19933 0.92771 0.94055 0.84771 1.21373 0.87986 1.40471 1.07788 0.89908 1.24857 0.94720 0.95298 0.97648 1.69891 1.00677 1.45431 1.36361 0.87015 0.79050 0.80592 0.84050 1.19873 1.20930 1.19010 1.19632 0.93258 0.96318 0.82724 1.22753 1.01653 0.91801 0.91556 1.21533 0.95335 1.02984 0.99054 1.21767 1.02639 0.99944 0.98895 1.23857 0.89234 1.00058 0.99068 1.84048 1.40983 1.48265 1.33269 0.92847 0.92227 0.92498 0.91148 0.92678 0.92732 0.92595 0.90958 0.91120 0.90429 0.89794 0.87854 0.85855 0.94774 0.94963 0.92409 0.87762 0.89164 0.83504 0.84127 0.78974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 37.15 0.33 -1.09 16 2 C -0.09 -0.85 2.92 -90.62 -0.26 -1.11 16 3 C -0.15 -1.17 9.19 37.16 0.34 -0.83 16 4 C -0.10 -1.04 4.69 -26.73 -0.13 -1.16 16 5 C -0.11 -1.36 5.70 37.16 0.21 -1.14 16 6 S -0.20 -3.43 20.87 -107.50 -2.24 -5.67 16 7 C -0.11 -2.06 4.98 36.01 0.18 -1.88 16 8 C 0.54 11.12 7.69 -10.98 -0.08 11.03 16 9 O -0.54 -12.31 15.44 5.56 0.09 -12.22 16 10 N -0.59 -11.69 2.44 -176.43 -0.43 -12.12 16 11 C 0.21 4.29 4.08 -5.20 -0.02 4.26 16 12 C -0.54 -13.49 9.59 -34.44 -0.33 -13.82 16 13 H 0.08 2.41 7.89 -52.49 -0.41 2.00 16 14 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 15 N -0.89 -25.01 13.96 55.43 0.77 -24.24 16 16 Si 0.87 18.94 27.47 -169.99 -4.67 14.28 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -5.42 6.54 56.52 0.37 -5.05 16 20 C 0.20 3.66 5.98 -5.19 -0.03 3.63 16 21 C -0.03 -0.52 6.90 -35.62 -0.25 -0.77 16 22 C -0.17 -3.29 10.40 -39.70 -0.41 -3.71 16 23 C -0.21 -3.82 10.91 -39.71 -0.43 -4.25 16 24 C -0.05 -0.93 12.09 29.41 0.36 -0.57 16 25 O -0.17 -3.43 10.65 5.68 0.06 -3.37 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.60 6.57 -51.93 -0.34 0.26 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.08 1.08 6.57 -51.92 -0.34 0.74 16 37 H 0.10 1.66 7.40 -51.92 -0.38 1.28 16 38 H 0.12 2.40 8.00 -51.92 -0.42 1.98 16 39 H 0.03 0.69 5.50 -51.93 -0.29 0.40 16 40 H 0.03 0.64 7.32 -51.93 -0.38 0.26 16 41 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.10 1.56 7.89 -51.93 -0.41 1.15 16 43 H 0.09 1.56 7.42 -51.93 -0.39 1.18 16 44 H 0.15 2.84 8.06 -52.49 -0.42 2.41 16 45 H 0.14 2.19 8.06 -52.48 -0.42 1.77 16 46 H 0.19 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -30.90 391.45 -8.75 -39.65 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: -7.60 Total: 7.28 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: -0.63 Total: -9.47 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.34 Total: -36.36 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.15 Total: -15.59 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.28 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.24 Total: -5.67 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.90 -8.75 -39.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343873715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.012 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds