Wall clock time and date at job start Tue Mar 31 2020 15:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47403 * 2 1 4 4 C 1.53009 * 109.47102 * 120.00064 * 2 1 3 5 5 C 1.53003 * 109.46968 * 64.99801 * 4 2 1 6 6 S 1.81394 * 109.46862 * 180.02562 * 5 4 2 7 7 C 1.81400 * 102.99947 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47434 * 179.97438 * 7 6 5 9 9 O 1.21282 * 119.99548 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99759 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00646 * 0.02562 * 10 8 7 12 12 C 1.50695 * 109.47443 * 270.00265 * 11 10 8 13 13 H 1.08001 * 120.00056 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00480 * 179.97438 * 12 11 10 15 15 N 1.31505 * 120.00447 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99662 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46974 * 90.00094 * 16 14 12 18 18 H 1.48500 * 109.47191 * 210.00006 * 16 14 12 19 19 H 1.48501 * 109.47289 * 330.00624 * 16 14 12 20 20 C 1.46505 * 119.99455 * 180.02562 * 10 8 7 21 21 C 1.50703 * 109.47064 * 90.00114 * 20 10 8 22 22 C 1.34515 * 125.79060 * 89.99944 * 21 20 10 23 23 C 1.41380 * 106.83832 * 179.97438 * 22 21 20 24 24 C 1.34506 * 106.84493 * 359.97438 * 23 22 21 25 25 O 1.34306 * 125.78568 * 269.69282 * 21 20 10 26 26 H 1.08999 * 109.47028 * 60.00064 * 1 2 3 27 27 H 1.09001 * 109.47595 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47164 * 300.00315 * 1 2 3 29 29 H 1.09000 * 109.47164 * 239.99684 * 2 1 3 30 30 H 1.08998 * 109.47097 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47700 * 299.99918 * 3 2 1 32 32 H 1.09000 * 109.47218 * 59.99717 * 3 2 1 33 33 H 1.09001 * 109.46554 * 304.99848 * 4 2 1 34 34 H 1.08992 * 109.47263 * 184.99765 * 4 2 1 35 35 H 1.09000 * 109.46940 * 59.99791 * 5 4 2 36 36 H 1.09001 * 109.47086 * 300.00208 * 5 4 2 37 37 H 1.09006 * 109.47044 * 60.00194 * 7 6 5 38 38 H 1.08999 * 109.47537 * 300.00568 * 7 6 5 39 39 H 1.09006 * 109.46911 * 30.00087 * 11 10 8 40 40 H 1.08996 * 109.47170 * 149.99599 * 11 10 8 41 41 H 0.97003 * 120.00287 * 179.97438 * 15 14 12 42 42 H 1.09002 * 109.47068 * 210.00083 * 20 10 8 43 43 H 1.09001 * 109.47372 * 330.00170 * 20 10 8 44 44 H 1.07996 * 126.58016 * 0.03378 * 22 21 20 45 45 H 1.08006 * 126.57610 * 179.97438 * 23 22 21 46 46 H 1.08005 * 125.79499 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6351 -2.1955 1.1880 6 16 2.2391 -3.0505 2.6694 7 6 1.6702 -4.7544 2.4176 8 6 2.1016 -5.6057 3.5841 9 8 2.7305 -5.1113 4.4957 10 7 1.7886 -6.9162 3.6140 11 6 1.0294 -7.5135 2.5126 12 6 -0.4452 -7.4128 2.8062 13 1 -0.7832 -6.9505 3.7219 14 6 -1.3630 -7.9108 1.9059 15 7 -2.6499 -7.8225 2.1618 16 14 -0.7785 -8.7097 0.3217 17 1 -0.5799 -10.1644 0.5449 18 1 -1.7964 -8.5063 -0.7402 19 1 0.5056 -8.0938 -0.0989 20 6 2.2075 -7.7435 4.7482 21 6 1.1367 -7.7218 5.8085 22 6 0.1050 -8.5798 5.9023 23 6 -0.6458 -8.1950 7.0368 24 6 -0.0278 -7.1252 7.5687 25 8 1.0540 -6.8458 6.8232 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6767 1.9563 0.8899 33 1 1.6053 -0.2617 2.1370 34 1 3.1262 -0.6444 1.2952 35 1 2.0697 -2.6550 0.3002 36 1 0.5488 -2.2724 1.1421 37 1 2.1040 -5.1504 1.4993 38 1 0.5830 -4.7670 2.3407 39 1 1.2528 -6.9822 1.5874 40 1 1.3080 -8.5618 2.4059 41 1 -3.2956 -8.1725 1.5282 42 1 2.3649 -8.7683 4.4119 43 1 3.1361 -7.3501 5.1616 44 1 -0.1082 -9.4049 5.2390 45 1 -1.5434 -8.6690 7.4056 46 1 -0.3453 -6.5849 8.4483 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343873715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:02:44 Heat of formation + Delta-G solvation = -49.592681 kcal Electronic energy + Delta-G solvation = -25433.788401 eV Core-core repulsion = 21836.558948 eV Total energy + Delta-G solvation = -3597.229452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.38313 -40.76999 -37.77688 -37.02579 -34.60558 -33.83581 -32.55256 -31.59769 -30.47488 -29.70571 -28.01369 -26.57559 -24.72542 -24.40823 -22.57789 -21.64212 -20.90322 -20.23169 -19.14865 -18.33964 -18.05776 -17.60407 -17.01217 -16.68881 -16.42000 -16.34782 -15.91649 -15.46424 -15.24729 -15.02901 -14.82107 -14.43872 -14.11764 -14.06943 -13.77060 -13.70882 -13.62940 -13.46698 -13.42469 -13.11156 -12.97131 -12.74083 -12.62788 -12.45180 -12.37300 -12.01574 -11.68935 -11.64918 -11.56414 -11.46799 -11.04485 -10.85194 -10.76695 -10.69138 -9.73769 -9.29241 -8.67164 -8.23702 -6.30588 0.46136 0.82869 1.41768 1.43142 1.51236 1.52197 1.61171 1.77507 2.25919 2.35713 2.37084 3.09354 3.52521 3.80645 3.87772 3.88278 4.04167 4.05887 4.14170 4.22026 4.22398 4.36695 4.41703 4.48061 4.49734 4.58821 4.66067 4.78149 4.81850 4.81991 4.91282 4.99090 5.02000 5.09402 5.10625 5.11844 5.27167 5.31237 5.44501 5.45672 5.50408 5.53181 5.68597 6.15938 6.30519 6.48251 6.77132 7.10125 7.34032 8.92165 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010254 B = 0.003806 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2730.063422 B = 7354.669923 C = 8969.858669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 C -0.145 4.145 4 C -0.091 4.091 5 C -0.091 4.091 6 S -0.244 6.244 7 C -0.106 4.106 8 C 0.531 3.469 9 O -0.565 6.565 10 N -0.586 5.586 11 C 0.211 3.789 12 C -0.527 4.527 13 H 0.030 0.970 14 C 0.022 3.978 15 N -0.942 5.942 16 Si 0.935 3.065 17 H -0.266 1.266 18 H -0.291 1.291 19 H -0.233 1.233 20 C 0.198 3.802 21 C -0.044 4.044 22 C -0.184 4.184 23 C -0.231 4.231 24 C -0.049 4.049 25 O -0.193 6.193 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.128 0.872 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.265 0.735 42 H 0.135 0.865 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.160 0.840 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.732 7.584 -3.632 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.107 4.107 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.239 4.239 6 S -0.017 6.017 7 C -0.257 4.257 8 C 0.318 3.682 9 O -0.445 6.445 10 N -0.317 5.317 11 C 0.089 3.911 12 C -0.565 4.565 13 H 0.048 0.952 14 C -0.176 4.176 15 N -0.581 5.581 16 Si 0.758 3.242 17 H -0.191 1.191 18 H -0.218 1.218 19 H -0.156 1.156 20 C 0.076 3.924 21 C -0.095 4.095 22 C -0.204 4.204 23 C -0.250 4.250 24 C -0.117 4.117 25 O -0.089 6.089 26 H 0.083 0.917 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.146 0.854 38 H 0.124 0.876 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.153 0.847 43 H 0.112 0.888 44 H 0.160 0.840 45 H 0.178 0.822 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 9.693 8.402 -2.337 13.039 hybrid contribution -1.799 -1.304 -1.353 2.601 sum 7.894 7.098 -3.689 11.238 Atomic orbital electron populations 1.21940 0.95310 1.01686 1.02147 1.21098 0.95837 0.96697 0.97113 1.21816 1.01258 0.94939 1.02210 1.21359 1.01708 0.90782 0.99173 1.23643 1.03938 0.99208 0.97106 1.87271 1.75211 1.05607 1.33616 1.23405 1.05813 0.95132 1.01301 1.19977 0.78640 0.82483 0.87071 1.90656 1.42158 1.72456 1.39218 1.47960 1.53989 1.08083 1.21674 1.19863 0.89974 0.95622 0.85637 1.21390 0.90502 1.39086 1.05571 0.95190 1.25706 0.94450 0.95974 1.01512 1.70066 1.02415 1.47582 1.38064 0.85915 0.79579 0.79857 0.78870 1.19067 1.21771 1.15594 1.19941 0.92794 0.97734 0.81968 1.23060 1.02379 0.91907 0.92109 1.21677 0.95908 1.03127 0.99732 1.22106 1.03505 1.00643 0.98771 1.24678 0.87883 0.99713 0.99390 1.84043 1.42212 1.48808 1.33879 0.91681 0.93217 0.92873 0.90376 0.92200 0.91674 0.92786 0.91800 0.90817 0.88821 0.90013 0.85435 0.87643 0.92952 0.92621 0.92593 0.84690 0.88762 0.83969 0.82191 0.74971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.95 71.98 0.64 -2.00 16 2 C -0.09 -1.42 2.92 -10.79 -0.03 -1.45 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.34 16 4 C -0.09 -1.86 4.69 30.60 0.14 -1.71 16 5 C -0.09 -2.20 5.70 71.98 0.41 -1.79 16 6 S -0.24 -8.14 20.87 -56.49 -1.18 -9.32 16 7 C -0.11 -3.79 4.98 71.24 0.35 -3.43 16 8 C 0.53 21.78 7.69 87.66 0.67 22.46 16 9 O -0.56 -26.00 15.44 -3.04 -0.05 -26.05 16 10 N -0.59 -22.92 2.44 -830.50 -2.03 -24.94 16 11 C 0.21 8.38 4.08 85.63 0.35 8.73 16 12 C -0.53 -26.57 9.59 25.60 0.25 -26.33 16 13 H 0.03 1.81 7.89 -2.91 -0.02 1.79 16 14 C 0.02 1.15 5.47 84.66 0.46 1.62 16 15 N -0.94 -54.44 13.96 21.45 0.30 -54.15 16 16 Si 0.93 37.77 27.47 68.60 1.88 39.65 16 17 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.23 -8.15 6.54 99.48 0.65 -7.50 16 20 C 0.20 6.98 5.98 85.63 0.51 7.49 16 21 C -0.04 -1.74 6.90 24.83 0.17 -1.57 16 22 C -0.18 -7.30 10.40 22.19 0.23 -7.07 16 23 C -0.23 -8.30 10.91 22.19 0.24 -8.06 16 24 C -0.05 -1.67 12.09 66.97 0.81 -0.87 16 25 O -0.19 -7.87 10.65 -2.58 -0.03 -7.90 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 0.94 6.57 -2.39 -0.02 0.93 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 36 H 0.08 2.04 6.57 -2.39 -0.02 2.02 16 37 H 0.13 3.83 7.40 -2.39 -0.02 3.82 16 38 H 0.11 4.13 8.00 -2.39 -0.02 4.11 16 39 H 0.05 1.93 5.50 -2.38 -0.01 1.92 16 40 H 0.06 2.01 7.32 -2.39 -0.02 1.99 16 41 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.14 3.79 7.89 -2.39 -0.02 3.77 16 43 H 0.09 3.23 7.42 -2.39 -0.02 3.21 16 44 H 0.14 5.63 8.06 -2.91 -0.02 5.60 16 45 H 0.16 4.94 8.06 -2.91 -0.02 4.91 16 46 H 0.23 5.57 8.06 -2.91 -0.02 5.55 16 Total: -1.00 -68.93 391.45 5.67 -63.26 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: 0.89 Total: 34.77 kcal Atomic # 6 Polarization: -21.21 SS G_CDS: 5.88 Total: -15.33 kcal Atomic # 7 Polarization: -77.36 SS G_CDS: -1.73 Total: -79.09 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.07 Total: -33.94 kcal Atomic # 14 Polarization: 37.77 SS G_CDS: 1.88 Total: 39.65 kcal Atomic # 16 Polarization: -8.14 SS G_CDS: -1.18 Total: -9.32 kcal Total: -68.93 5.67 -63.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343873715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.664 kcal (2) G-P(sol) polarization free energy of solvation -68.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds