Wall clock time and date at job start Tue Mar 31 2020 14:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38220 * 120.00051 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99697 * 359.95697 * 5 4 3 7 7 C 1.38217 * 120.00132 * 0.07194 * 6 5 4 8 8 S 1.76199 * 119.99635 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40706 * 23.48889 * 8 7 6 10 10 O 1.42109 * 106.40127 * 156.41361 * 8 7 6 11 11 N 1.65600 * 107.21686 * 269.94654 * 8 7 6 12 12 C 1.46508 * 119.99578 * 65.00548 * 11 8 7 13 13 C 1.53002 * 109.46909 * 164.99957 * 12 11 8 14 14 C 1.53002 * 109.47178 * 299.99827 * 13 12 11 15 15 C 1.52998 * 109.47303 * 60.00022 * 13 12 11 16 16 C 1.53002 * 109.46945 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46953 * 179.97438 * 16 13 12 18 18 H 1.08007 * 120.00194 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00128 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00440 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47172 * 59.99631 * 21 19 17 23 23 H 1.48496 * 109.47783 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47265 * 300.00109 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 26 26 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 27 27 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 29 29 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 30 30 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 31 31 H 1.08002 * 120.00348 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.00153 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.99804 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00670 * 245.00427 * 11 8 7 35 35 H 1.09000 * 109.46980 * 284.99631 * 12 11 8 36 36 H 1.08994 * 109.47042 * 44.99882 * 12 11 8 37 37 H 1.09000 * 109.47011 * 60.00045 * 14 13 12 38 38 H 1.09000 * 109.47239 * 180.02562 * 14 13 12 39 39 H 1.09002 * 109.47057 * 300.00091 * 14 13 12 40 40 H 1.09000 * 109.47387 * 59.99836 * 15 13 12 41 41 H 1.09001 * 109.47574 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.46807 * 299.99483 * 15 13 12 43 43 H 1.09000 * 109.46982 * 299.99697 * 16 13 12 44 44 H 1.08994 * 109.47004 * 59.99926 * 16 13 12 45 45 H 0.97006 * 119.99883 * 179.97438 * 20 19 17 46 46 H 1.07995 * 120.00164 * 359.72517 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7236 3.3756 -1.1974 6 6 2.9540 4.0274 0.0000 7 6 2.7245 3.3755 1.1970 8 16 3.0188 4.2060 2.7228 9 8 2.9338 5.5970 2.4456 10 8 2.2116 3.5564 3.6954 11 7 4.5918 3.9090 3.1471 12 6 5.6839 4.4222 2.3161 13 6 6.9978 4.3451 3.0963 14 6 6.8857 5.1877 4.3685 15 6 7.2833 2.8897 3.4720 16 6 8.1384 4.8804 2.2283 17 6 9.4325 4.8051 2.9970 18 1 9.4405 4.4149 4.0040 19 6 10.6062 5.2344 2.4146 20 7 10.5965 5.7090 1.1882 21 14 12.2101 5.1417 3.3676 22 1 12.4871 3.7296 3.7345 23 1 13.3174 5.6600 2.5248 24 1 12.1010 5.9613 4.6011 25 6 2.2626 2.0724 1.1970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0825 1.5635 -2.1327 32 1 2.9037 3.8847 -2.1327 33 1 3.3148 5.0454 0.0000 34 1 4.7901 3.3954 3.9456 35 1 5.7638 3.8219 1.4098 36 1 5.4805 5.4590 2.0485 37 1 6.0732 4.8059 4.9867 38 1 7.8219 5.1332 4.9241 39 1 6.6823 6.2246 4.1008 40 1 7.3632 2.2894 2.5657 41 1 8.2192 2.8349 4.0282 42 1 6.4708 2.5080 4.0903 43 1 8.2181 4.2798 1.3222 44 1 7.9352 5.9172 1.9603 45 1 11.4222 6.0114 0.7786 46 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344972162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:48 Heat of formation + Delta-G solvation = -78.343561 kcal Electronic energy + Delta-G solvation = -25885.779777 eV Core-core repulsion = 22287.303593 eV Total energy + Delta-G solvation = -3598.476184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62673 -37.74388 -37.10940 -35.78443 -34.48668 -33.56367 -31.90778 -31.43359 -29.70484 -27.04060 -26.46852 -25.85564 -24.30323 -23.45571 -22.75366 -21.54729 -19.33590 -18.41089 -17.75455 -17.13631 -16.43099 -16.17051 -16.11946 -15.42524 -14.86972 -14.57565 -14.43226 -14.17173 -14.00777 -13.83883 -13.54737 -13.33953 -12.83734 -12.55243 -12.48390 -12.35392 -12.17974 -12.08375 -12.02466 -11.94800 -11.84720 -11.48746 -11.23379 -11.17353 -10.99207 -10.86331 -10.74999 -10.61348 -10.40765 -10.26256 -9.89927 -9.54504 -9.27346 -9.15781 -9.02729 -8.91847 -8.36327 -6.01069 -4.01814 0.40834 0.71071 1.08474 3.03248 3.31871 3.36065 3.37091 3.39082 3.81685 4.23895 4.44504 4.47162 4.62563 4.75960 4.82791 4.97979 5.04350 5.20802 5.24073 5.29426 5.34785 5.42007 5.56664 5.57335 5.68686 5.71890 5.75666 5.84412 5.88409 5.91249 6.06164 6.13421 6.21189 6.23307 6.34420 6.40159 6.64009 6.66762 6.69238 7.05472 7.09053 7.13928 7.19559 7.61874 7.75091 7.97739 8.40412 9.02609 9.61321 11.10407 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.003103 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.497944 B = 9020.509841 C = 9579.265022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.107 4.107 4 C -0.065 4.065 5 C -0.136 4.136 6 C -0.023 4.023 7 C -0.669 4.669 8 S 2.693 3.307 9 O -0.957 6.957 10 O -0.968 6.968 11 N -1.109 6.109 12 C 0.124 3.876 13 C -0.065 4.065 14 C -0.129 4.129 15 C -0.128 4.128 16 C 0.035 3.965 17 C -0.511 4.511 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.277 1.277 25 C -0.018 4.018 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.417 0.583 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.032 0.968 38 H 0.065 0.935 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.031 0.969 43 H 0.018 0.982 44 H 0.019 0.981 45 H 0.260 0.740 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.396 -9.624 -3.426 21.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.083 4.083 5 C -0.155 4.155 6 C -0.042 4.042 7 C -0.756 4.756 8 S 2.782 3.218 9 O -0.947 6.947 10 O -0.958 6.958 11 N -0.871 5.871 12 C -0.002 4.002 13 C -0.067 4.067 14 C -0.186 4.186 15 C -0.185 4.185 16 C -0.003 4.003 17 C -0.549 4.549 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.203 1.203 25 C -0.038 4.038 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.160 0.840 34 H 0.254 0.746 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.051 0.949 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.050 0.950 43 H 0.036 0.964 44 H 0.038 0.962 45 H 0.070 0.930 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.928 -8.945 -3.277 21.190 hybrid contribution 1.304 -0.657 -0.009 1.460 sum -17.624 -9.601 -3.286 20.337 Atomic orbital electron populations 1.21781 0.94579 1.01915 1.02378 1.20565 0.96312 0.92094 1.03324 1.20020 1.00713 0.96850 0.93156 1.21342 0.94740 0.94497 0.97734 1.21306 1.00599 0.95182 0.98433 1.21008 0.92597 0.99428 0.91149 1.31040 1.16172 1.07741 1.20610 1.01848 0.72518 0.74027 0.73406 1.93588 1.85850 1.29805 1.85428 1.93566 1.66934 1.76949 1.58384 1.55469 1.23099 1.70924 1.37657 1.21609 0.86953 0.98704 0.92913 1.20809 0.93475 0.95934 0.96434 1.21763 1.00773 0.99197 0.96881 1.21765 1.00718 0.95459 1.00585 1.19123 0.90850 0.96183 0.94160 1.21160 0.92054 1.41385 1.00309 0.92276 1.24999 0.99026 0.95516 0.94909 1.69949 1.27493 1.42762 1.13328 0.86713 0.83382 0.78307 0.79902 1.20364 1.21429 1.20306 1.20777 0.92361 0.91895 0.98720 0.92569 0.92174 0.92312 0.90742 0.90591 0.85441 0.84928 0.84042 0.74616 0.92147 0.90500 0.94851 0.91569 0.93238 0.93405 0.91416 0.95036 0.96395 0.96230 0.93012 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.89 37.16 0.37 -0.65 16 2 C -0.09 -0.64 6.06 -27.88 -0.17 -0.81 16 3 C -0.11 -1.06 5.13 -104.62 -0.54 -1.60 16 4 C -0.06 -0.61 9.70 -39.58 -0.38 -0.99 16 5 C -0.14 -1.39 10.05 -39.58 -0.40 -1.79 16 6 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 7 C -0.67 -8.43 5.95 -39.58 -0.24 -8.66 16 8 S 2.69 37.60 5.74 -107.50 -0.62 36.99 16 9 O -0.96 -15.95 16.75 -57.17 -0.96 -16.91 16 10 O -0.97 -15.04 17.28 -57.17 -0.99 -16.03 16 11 N -1.11 -15.14 5.33 -10.61 -0.06 -15.20 16 12 C 0.12 1.96 5.11 -4.04 -0.02 1.94 16 13 C -0.06 -1.20 0.55 -154.51 -0.08 -1.28 16 14 C -0.13 -2.31 8.06 37.16 0.30 -2.01 16 15 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 16 C 0.03 0.82 4.04 -27.88 -0.11 0.71 16 17 C -0.51 -13.35 7.65 -34.44 -0.26 -13.61 16 18 H 0.06 1.49 5.68 -52.48 -0.30 1.19 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.97 13.29 55.43 0.74 -25.24 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.02 -0.21 9.18 -39.58 -0.36 -0.57 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 33 H 0.14 1.61 7.62 -52.48 -0.40 1.21 16 34 H 0.42 5.15 6.47 -34.48 -0.22 4.93 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 1.25 7.75 -51.93 -0.40 0.85 16 37 H 0.03 0.51 7.20 -51.93 -0.37 0.13 16 38 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 42 H 0.03 0.44 6.60 -51.93 -0.34 0.10 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.14 1.42 7.61 -52.49 -0.40 1.02 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -32.38 381.55 -10.56 -42.94 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.33 Total: 2.10 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: -2.08 Total: -30.42 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.68 Total: -40.43 kcal Atomic # 8 Polarization: -30.99 SS G_CDS: -1.95 Total: -32.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 37.60 SS G_CDS: -0.62 Total: 36.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.38 -10.56 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344972162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.403 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds