Wall clock time and date at job start Tue Mar 31 2020 14:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50701 * 109.47008 * 2 1 4 4 C 1.38253 * 119.99890 * 270.01705 * 3 2 1 5 5 C 1.38220 * 120.00051 * 180.02562 * 4 3 2 6 6 C 1.38255 * 119.99697 * 359.95697 * 5 4 3 7 7 C 1.38217 * 120.00132 * 0.07194 * 6 5 4 8 8 S 1.76199 * 119.99635 * 179.97438 * 7 6 5 9 9 O 1.42098 * 106.40706 * 23.48889 * 8 7 6 10 10 O 1.42109 * 106.40127 * 156.41361 * 8 7 6 11 11 N 1.65600 * 107.21686 * 269.94654 * 8 7 6 12 12 C 1.46508 * 119.99578 * 65.00548 * 11 8 7 13 13 C 1.53002 * 109.46909 * 164.99957 * 12 11 8 14 14 C 1.53002 * 109.47178 * 299.99827 * 13 12 11 15 15 C 1.52998 * 109.47303 * 60.00022 * 13 12 11 16 16 C 1.53002 * 109.46945 * 179.97438 * 13 12 11 17 17 C 1.50701 * 109.46953 * 179.97438 * 16 13 12 18 18 H 1.08007 * 120.00194 * 359.97438 * 17 16 13 19 19 C 1.37874 * 120.00128 * 179.97438 * 17 16 13 20 20 N 1.31516 * 119.99652 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00440 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47172 * 59.99631 * 21 19 17 23 23 H 1.48496 * 109.47783 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47265 * 300.00109 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99868 * 3 2 1 26 26 H 1.09000 * 109.47148 * 60.00017 * 1 2 3 27 27 H 1.09005 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47213 * 299.99878 * 1 2 3 29 29 H 1.08990 * 109.47328 * 239.99584 * 2 1 3 30 30 H 1.09006 * 109.47142 * 119.99509 * 2 1 3 31 31 H 1.08002 * 120.00348 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.00153 * 179.97438 * 5 4 3 33 33 H 1.08005 * 119.99804 * 179.97438 * 6 5 4 34 34 H 0.96997 * 120.00670 * 245.00427 * 11 8 7 35 35 H 1.09000 * 109.46980 * 284.99631 * 12 11 8 36 36 H 1.08994 * 109.47042 * 44.99882 * 12 11 8 37 37 H 1.09000 * 109.47011 * 60.00045 * 14 13 12 38 38 H 1.09000 * 109.47239 * 180.02562 * 14 13 12 39 39 H 1.09002 * 109.47057 * 300.00091 * 14 13 12 40 40 H 1.09000 * 109.47387 * 59.99836 * 15 13 12 41 41 H 1.09001 * 109.47574 * 180.02562 * 15 13 12 42 42 H 1.09002 * 109.46807 * 299.99483 * 15 13 12 43 43 H 1.09000 * 109.46982 * 299.99697 * 16 13 12 44 44 H 1.08994 * 109.47004 * 59.99926 * 16 13 12 45 45 H 0.97006 * 119.99883 * 179.97438 * 20 19 17 46 46 H 1.07995 * 120.00164 * 359.72517 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2624 2.0727 -1.1973 5 6 2.7236 3.3756 -1.1974 6 6 2.9540 4.0274 0.0000 7 6 2.7245 3.3755 1.1970 8 16 3.0188 4.2060 2.7228 9 8 2.9338 5.5970 2.4456 10 8 2.2116 3.5564 3.6954 11 7 4.5918 3.9090 3.1471 12 6 5.6839 4.4222 2.3161 13 6 6.9978 4.3451 3.0963 14 6 6.8857 5.1877 4.3685 15 6 7.2833 2.8897 3.4720 16 6 8.1384 4.8804 2.2283 17 6 9.4325 4.8051 2.9970 18 1 9.4405 4.4149 4.0040 19 6 10.6062 5.2344 2.4146 20 7 10.5965 5.7090 1.1882 21 14 12.2101 5.1417 3.3676 22 1 12.4871 3.7296 3.7345 23 1 13.3174 5.6600 2.5248 24 1 12.1010 5.9613 4.6011 25 6 2.2626 2.0724 1.1970 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8898 30 1 1.8933 -0.5138 0.8901 31 1 2.0825 1.5635 -2.1327 32 1 2.9037 3.8847 -2.1327 33 1 3.3148 5.0454 0.0000 34 1 4.7901 3.3954 3.9456 35 1 5.7638 3.8219 1.4098 36 1 5.4805 5.4590 2.0485 37 1 6.0732 4.8059 4.9867 38 1 7.8219 5.1332 4.9241 39 1 6.6823 6.2246 4.1008 40 1 7.3632 2.2894 2.5657 41 1 8.2192 2.8349 4.0282 42 1 6.4708 2.5080 4.0903 43 1 8.2181 4.2798 1.3222 44 1 7.9352 5.9172 1.9603 45 1 11.4222 6.0114 0.7786 46 1 2.0784 1.5648 2.1323 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344972162.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:47 Heat of formation + Delta-G solvation = -98.145988 kcal Electronic energy + Delta-G solvation = -25886.638474 eV Core-core repulsion = 22287.303593 eV Total energy + Delta-G solvation = -3599.334882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41144 -39.20765 -38.33212 -37.00006 -35.24892 -35.13345 -33.65231 -32.25683 -30.40186 -28.95056 -27.90857 -27.26424 -24.97016 -24.63255 -24.30034 -22.28730 -20.46340 -19.88893 -18.75151 -18.33752 -18.29486 -17.24157 -17.03911 -16.52503 -16.40560 -15.78973 -15.52812 -15.45870 -14.95986 -14.78215 -14.46852 -14.41460 -14.28056 -13.99132 -13.89026 -13.35777 -13.29504 -13.26471 -13.19129 -13.11521 -12.88076 -12.76916 -12.68691 -12.59384 -12.26778 -12.17483 -12.12896 -11.96490 -11.81042 -11.64761 -11.47332 -10.93699 -10.83575 -10.47131 -10.43901 -10.32029 -9.82524 -8.11269 -6.17458 -0.66248 -0.18975 0.27473 1.43841 1.45011 1.52107 1.97159 2.45293 2.46879 2.75826 3.23444 3.26789 3.72140 3.83710 3.94037 4.02888 4.14919 4.20565 4.24217 4.27011 4.43350 4.49196 4.52029 4.59981 4.74618 4.76667 4.80316 4.91637 4.99198 5.01892 5.02732 5.08035 5.12799 5.17849 5.22774 5.29068 5.37100 5.48831 5.50789 5.55093 5.57670 5.61658 5.86427 5.86713 5.94448 6.08557 6.36775 6.97085 7.49556 9.00694 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.017074 B = 0.003103 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.497944 B = 9020.509841 C = 9579.265022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.085 4.085 3 C -0.108 4.108 4 C -0.062 4.062 5 C -0.140 4.140 6 C -0.045 4.045 7 C -0.677 4.677 8 S 2.709 3.291 9 O -0.989 6.989 10 O -0.983 6.983 11 N -1.102 6.102 12 C 0.133 3.867 13 C -0.062 4.062 14 C -0.128 4.128 15 C -0.124 4.124 16 C 0.039 3.961 17 C -0.515 4.515 18 H 0.068 0.932 19 C -0.001 4.001 20 N -0.936 5.936 21 Si 0.953 3.047 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.271 1.271 25 C -0.034 4.034 26 H 0.058 0.942 27 H 0.074 0.926 28 H 0.047 0.953 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.138 0.862 34 H 0.425 0.575 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.038 0.962 40 H 0.046 0.954 41 H 0.051 0.949 42 H 0.067 0.933 43 H -0.005 1.005 44 H -0.010 1.010 45 H 0.259 0.741 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.233 -11.665 -3.353 22.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.123 4.123 3 C -0.109 4.109 4 C -0.080 4.080 5 C -0.159 4.159 6 C -0.064 4.064 7 C -0.766 4.766 8 S 2.802 3.198 9 O -0.979 6.979 10 O -0.974 6.974 11 N -0.865 5.865 12 C 0.006 3.994 13 C -0.063 4.063 14 C -0.185 4.185 15 C -0.182 4.182 16 C 0.001 3.999 17 C -0.553 4.553 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.577 5.577 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.196 1.196 25 C -0.053 4.053 26 H 0.077 0.923 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.176 0.824 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.263 0.737 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.014 0.986 44 H 0.008 0.992 45 H 0.068 0.932 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.766 -10.984 -3.148 22.831 hybrid contribution 1.487 -0.062 -0.106 1.492 sum -18.280 -11.046 -3.254 21.604 Atomic orbital electron populations 1.21782 0.94073 1.02766 1.01978 1.20644 0.96659 0.90582 1.04386 1.20374 0.99797 0.98008 0.92764 1.21756 0.93230 0.94146 0.98881 1.21634 0.99901 0.95727 0.98596 1.21167 0.93683 0.99706 0.91885 1.30676 1.18017 1.08398 1.19544 1.01081 0.72030 0.73207 0.73496 1.93546 1.86192 1.32122 1.85998 1.93538 1.67196 1.77063 1.59577 1.55250 1.22409 1.70932 1.37915 1.21350 0.86208 0.98717 0.93082 1.20656 0.92823 0.96879 0.95975 1.21740 1.01233 0.98717 0.96807 1.21712 1.01281 0.94225 1.00942 1.18996 0.92482 0.94282 0.94100 1.21586 0.92927 1.40085 1.00682 0.91428 1.25851 1.02668 0.95542 0.95784 1.70089 1.28216 1.44337 1.15046 0.85688 0.79187 0.78721 0.78558 1.19290 1.21606 1.19581 1.20996 0.92764 0.91613 0.99914 0.92338 0.90731 0.93377 0.89071 0.90207 0.82354 0.82715 0.84406 0.73707 0.91246 0.91352 0.91761 0.92905 0.94316 0.93531 0.93026 0.91471 0.98629 0.99161 0.93199 0.83821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.89 71.98 0.71 -0.95 16 2 C -0.09 -1.05 6.06 29.85 0.18 -0.87 16 3 C -0.11 -1.92 5.13 -19.87 -0.10 -2.02 16 4 C -0.06 -1.00 9.70 22.27 0.22 -0.78 16 5 C -0.14 -2.60 10.05 22.27 0.22 -2.38 16 6 C -0.04 -1.06 9.52 22.27 0.21 -0.84 16 7 C -0.68 -16.66 5.95 22.27 0.13 -16.53 16 8 S 2.71 74.88 5.74 -56.49 -0.32 74.56 16 9 O -0.99 -33.42 16.75 -128.00 -2.14 -35.56 16 10 O -0.98 -29.90 17.28 -128.00 -2.21 -32.11 16 11 N -1.10 -28.99 5.33 -187.48 -1.00 -29.99 16 12 C 0.13 4.18 5.11 86.38 0.44 4.62 16 13 C -0.06 -2.27 0.55 -52.18 -0.03 -2.30 16 14 C -0.13 -4.51 8.06 71.98 0.58 -3.93 16 15 C -0.12 -4.07 8.05 71.98 0.58 -3.49 16 16 C 0.04 1.91 4.04 29.85 0.12 2.03 16 17 C -0.51 -27.20 7.65 25.60 0.20 -27.01 16 18 H 0.07 3.40 5.68 -2.91 -0.02 3.38 16 19 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 20 N -0.94 -55.58 13.29 21.45 0.28 -55.30 16 21 Si 0.95 43.32 29.54 68.60 2.03 45.35 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 25 C -0.03 -0.73 9.18 22.27 0.20 -0.52 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.83 8.08 -2.39 -0.02 0.81 16 30 H 0.08 0.93 8.09 -2.38 -0.02 0.91 16 31 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 32 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.14 3.21 7.62 -2.91 -0.02 3.19 16 34 H 0.42 9.65 6.47 -96.75 -0.63 9.03 16 35 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 37 H 0.06 1.85 7.20 -2.39 -0.02 1.83 16 38 H 0.05 1.99 6.62 -2.39 -0.02 1.97 16 39 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 1.85 6.62 -2.39 -0.02 1.83 16 42 H 0.07 1.70 6.60 -2.39 -0.02 1.69 16 43 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 44 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 45 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 46 H 0.14 2.81 7.61 -2.91 -0.02 2.79 16 Total: -1.00 -70.28 381.55 1.10 -69.18 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: 0.34 Total: 18.45 kcal Atomic # 6 Polarization: -58.70 SS G_CDS: 4.13 Total: -54.57 kcal Atomic # 7 Polarization: -84.57 SS G_CDS: -0.71 Total: -85.29 kcal Atomic # 8 Polarization: -63.32 SS G_CDS: -4.36 Total: -67.67 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 74.88 SS G_CDS: -0.32 Total: 74.56 kcal Total: -70.28 1.10 -69.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344972162.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.968 kcal (2) G-P(sol) polarization free energy of solvation -70.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds