Wall clock time and date at job start Tue Mar 31 2020 14:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46724 * 2 1 4 4 C 1.38261 * 120.00257 * 270.91547 * 3 2 1 5 5 C 1.38208 * 119.99918 * 180.27878 * 4 3 2 6 6 C 1.38260 * 120.00206 * 359.74221 * 5 4 3 7 7 C 1.38213 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00192 * 90.65864 * 3 2 1 9 9 S 1.76209 * 119.99540 * 359.97438 * 8 3 2 10 10 O 1.42097 * 106.40211 * 177.03299 * 9 8 3 11 11 O 1.42096 * 106.40407 * 309.95586 * 9 8 3 12 12 N 1.65605 * 107.21437 * 63.49535 * 9 8 3 13 13 C 1.46498 * 120.00217 * 64.03100 * 12 9 8 14 14 C 1.52998 * 109.47331 * 163.70863 * 13 12 9 15 15 C 1.52997 * 109.47501 * 300.00290 * 14 13 12 16 16 C 1.53005 * 109.46555 * 60.00405 * 14 13 12 17 17 C 1.52999 * 109.47244 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.46928 * 180.02562 * 17 14 13 19 19 H 1.07992 * 120.00244 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99723 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46921 * 119.99959 * 22 20 18 25 25 H 1.48494 * 109.47190 * 239.99764 * 22 20 18 26 26 H 1.08996 * 109.47434 * 306.75572 * 1 2 3 27 27 H 1.09001 * 109.47078 * 66.76572 * 1 2 3 28 28 H 1.09006 * 109.46457 * 186.75938 * 1 2 3 29 29 H 1.08996 * 109.47307 * 240.00562 * 2 1 3 30 30 H 1.08990 * 109.47404 * 120.00013 * 2 1 3 31 31 H 1.07996 * 119.99990 * 0.03705 * 4 3 2 32 32 H 1.07997 * 120.00153 * 179.76769 * 5 4 3 33 33 H 1.08000 * 120.00335 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.00157 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99626 * 244.02145 * 12 9 8 36 36 H 1.08998 * 109.47207 * 283.71664 * 13 12 9 37 37 H 1.09007 * 109.47001 * 43.71322 * 13 12 9 38 38 H 1.09002 * 109.47236 * 59.99688 * 15 14 13 39 39 H 1.08998 * 109.47291 * 179.97438 * 15 14 13 40 40 H 1.08990 * 109.46952 * 299.99692 * 15 14 13 41 41 H 1.08997 * 109.47777 * 59.99855 * 16 14 13 42 42 H 1.08998 * 109.47204 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.46999 * 299.99587 * 16 14 13 44 44 H 1.09007 * 109.46936 * 300.00070 * 17 14 13 45 45 H 1.08990 * 109.47112 * 60.00367 * 17 14 13 46 46 H 0.97002 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2446 2.0791 -1.1972 5 6 2.7107 3.3802 -1.1972 6 6 2.9595 4.0254 0.0000 7 6 2.7417 3.3695 1.1969 8 6 2.2755 2.0679 1.1969 9 16 1.9978 1.2315 2.7228 10 8 2.4016 2.1263 3.7501 11 8 0.6920 0.6766 2.6444 12 7 3.0472 -0.0483 2.7783 13 6 4.4923 0.1901 2.8095 14 6 5.2097 -1.0835 3.2613 15 6 4.7266 -1.4723 4.6600 16 6 4.9011 -2.2174 2.2816 17 6 6.7190 -0.8346 3.2934 18 6 7.4257 -2.0894 3.7378 19 1 6.8553 -2.9754 3.9742 20 6 8.8003 -2.1057 3.8437 21 7 9.4947 -1.0265 3.5563 22 14 9.6762 -3.6607 4.3952 23 1 8.6756 -4.7267 4.6553 24 1 10.6092 -4.1075 3.3299 25 1 10.4401 -3.3841 5.6382 26 1 -0.3634 0.6149 0.8233 27 1 -0.3633 0.4054 -0.9443 28 1 -0.3632 -1.0206 0.1210 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0500 1.5752 -2.1324 32 1 2.8802 3.8931 -2.1324 33 1 3.3234 5.0423 0.0000 34 1 2.9364 3.8733 2.1321 35 1 2.7050 -0.9559 2.7902 36 1 4.8365 0.4671 1.8131 37 1 4.7122 0.9980 3.5076 38 1 3.6514 -1.6497 4.6367 39 1 5.2374 -2.3799 4.9816 40 1 4.9465 -0.6645 5.3579 41 1 5.2453 -1.9406 1.2851 42 1 5.4118 -3.1249 2.6036 43 1 3.8258 -2.3949 2.2583 44 1 7.0629 -0.5580 2.2967 45 1 6.9393 -0.0267 3.9910 46 1 10.4619 -1.0381 3.6304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345041551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:51 Heat of formation + Delta-G solvation = -70.502392 kcal Electronic energy + Delta-G solvation = -26657.174393 eV Core-core repulsion = 23059.038227 eV Total energy + Delta-G solvation = -3598.136165 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.63425 -37.73960 -37.23769 -35.77869 -34.38142 -33.50577 -31.90593 -31.42160 -29.56281 -27.04259 -26.47459 -25.88664 -24.21744 -23.40252 -22.73865 -21.36126 -19.46368 -18.43054 -17.88483 -17.13913 -16.49055 -16.19181 -15.95285 -15.21145 -14.79395 -14.55259 -14.49476 -14.22314 -13.97159 -13.74061 -13.43743 -13.33417 -12.83436 -12.60965 -12.43694 -12.27331 -12.13541 -12.08859 -11.96133 -11.85996 -11.70867 -11.26959 -11.24362 -11.01901 -10.97577 -10.82939 -10.68401 -10.62357 -10.40684 -10.23636 -9.89282 -9.54447 -9.26406 -9.15479 -9.00457 -8.89644 -8.36829 -6.01114 -4.01768 0.43071 0.71852 1.11037 3.03505 3.29711 3.35277 3.38121 3.40776 3.79578 4.32999 4.44407 4.46854 4.61300 4.74855 4.90173 5.10193 5.20778 5.24781 5.30193 5.34924 5.35614 5.56719 5.58300 5.72654 5.73673 5.80664 5.81206 5.85098 5.97527 6.12355 6.14927 6.17018 6.23958 6.32550 6.36628 6.40056 6.66177 6.66675 6.69325 7.05040 7.08828 7.13970 7.18634 7.62753 7.75433 7.97992 8.40547 9.03235 9.61537 11.10425 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003505 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.085559 B = 7986.847324 C = 8331.521413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C 0.025 3.975 4 C -0.142 4.142 5 C -0.064 4.064 6 C -0.147 4.147 7 C -0.018 4.018 8 C -0.674 4.674 9 S 2.692 3.308 10 O -0.961 6.961 11 O -0.960 6.960 12 N -1.110 6.110 13 C 0.125 3.875 14 C -0.064 4.064 15 C -0.129 4.129 16 C -0.128 4.128 17 C 0.033 3.967 18 C -0.509 4.509 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.895 5.895 22 Si 0.888 3.112 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.285 1.285 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.143 0.857 35 H 0.417 0.583 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.047 0.953 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.018 0.982 45 H 0.019 0.981 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.372 6.307 -9.533 19.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.149 4.149 3 C 0.024 3.976 4 C -0.161 4.161 5 C -0.082 4.082 6 C -0.166 4.166 7 C -0.037 4.037 8 C -0.760 4.760 9 S 2.781 3.219 10 O -0.951 6.951 11 O -0.950 6.950 12 N -0.873 5.873 13 C 0.000 4.000 14 C -0.066 4.066 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.004 4.004 18 C -0.548 4.548 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.081 0.919 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.254 0.746 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.086 0.914 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.038 0.962 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.729 6.798 -8.906 20.134 hybrid contribution 1.028 -0.934 -0.559 1.497 sum -15.701 5.864 -9.465 19.248 Atomic orbital electron populations 1.21874 0.92936 1.03279 1.02752 1.20970 0.98019 0.91702 1.04186 1.19573 0.90925 0.95213 0.91906 1.21140 1.01878 0.95374 0.97686 1.21440 0.93962 0.94398 0.98372 1.21274 1.02195 1.00710 0.92416 1.21004 0.91073 0.92042 0.99622 1.30845 1.17475 1.07735 1.19956 1.01902 0.73014 0.73201 0.73744 1.93567 1.82995 1.65043 1.53485 1.93571 1.36291 1.78073 1.87111 1.55527 1.18436 1.22100 1.91231 1.21590 0.76924 1.00480 1.01040 1.20804 0.98849 0.92044 0.94912 1.21757 0.98185 1.02288 0.96355 1.21767 0.98223 0.99699 0.98828 1.19136 0.86461 0.97409 0.97416 1.21233 0.91248 0.97727 1.44551 0.92155 1.25004 0.97815 0.95958 0.95701 1.69970 1.06506 1.27685 1.49334 0.86601 0.79782 0.83704 0.78285 1.19790 1.21194 1.21135 0.89715 0.93106 0.91863 0.89602 0.90626 0.85273 0.85373 0.85106 0.83917 0.74623 0.92164 0.90541 0.94871 0.91583 0.93248 0.93380 0.91396 0.95083 0.96389 0.96233 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.40 37.16 0.35 -1.20 16 2 C -0.11 -1.17 5.31 -27.88 -0.15 -1.32 16 3 C 0.03 0.29 5.13 -104.62 -0.54 -0.24 16 4 C -0.14 -1.43 9.71 -39.58 -0.38 -1.81 16 5 C -0.06 -0.59 10.05 -39.58 -0.40 -0.99 16 6 C -0.15 -1.49 10.05 -39.58 -0.40 -1.89 16 7 C -0.02 -0.22 9.55 -39.59 -0.38 -0.60 16 8 C -0.67 -8.67 5.86 -39.58 -0.23 -8.90 16 9 S 2.69 37.79 4.92 -107.50 -0.53 37.26 16 10 O -0.96 -16.20 16.46 -57.17 -0.94 -17.14 16 11 O -0.96 -14.21 14.20 -57.17 -0.81 -15.02 16 12 N -1.11 -15.09 4.08 -10.61 -0.04 -15.13 16 13 C 0.12 2.00 5.11 -4.04 -0.02 1.98 16 14 C -0.06 -1.19 0.55 -154.51 -0.09 -1.27 16 15 C -0.13 -2.30 8.06 37.16 0.30 -2.01 16 16 C -0.13 -2.15 8.05 37.16 0.30 -1.85 16 17 C 0.03 0.80 4.04 -27.88 -0.11 0.68 16 18 C -0.51 -13.31 7.65 -34.44 -0.26 -13.57 16 19 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 20 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 21 N -0.90 -26.01 13.29 55.43 0.74 -25.27 16 22 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 23 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.08 1.03 5.98 -51.93 -0.31 0.72 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.09 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.08 0.81 4.97 -51.93 -0.26 0.55 16 31 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.14 1.63 7.34 -52.48 -0.39 1.25 16 35 H 0.42 5.03 6.08 -34.47 -0.21 4.82 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.08 1.28 7.75 -51.92 -0.40 0.88 16 38 H 0.03 0.50 7.23 -51.93 -0.38 0.12 16 39 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 43 H 0.03 0.42 6.59 -51.93 -0.34 0.08 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 370.17 15.07 5.58 5.58 Total: -1.00 -31.89 370.17 -10.19 -42.08 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.05 Total: 3.19 kcal Atomic # 6 Polarization: -29.44 SS G_CDS: -2.11 Total: -31.55 kcal Atomic # 7 Polarization: -41.10 SS G_CDS: 0.69 Total: -40.40 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.75 Total: -32.16 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 37.79 SS G_CDS: -0.53 Total: 37.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.89 -10.19 -42.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345041551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.420 kcal (2) G-P(sol) polarization free energy of solvation -31.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds