Wall clock time and date at job start Tue Mar 31 2020 14:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46724 * 2 1 4 4 C 1.38261 * 120.00257 * 270.91547 * 3 2 1 5 5 C 1.38208 * 119.99918 * 180.27878 * 4 3 2 6 6 C 1.38260 * 120.00206 * 359.74221 * 5 4 3 7 7 C 1.38213 * 119.99943 * 359.97438 * 6 5 4 8 8 C 1.38217 * 120.00192 * 90.65864 * 3 2 1 9 9 S 1.76209 * 119.99540 * 359.97438 * 8 3 2 10 10 O 1.42097 * 106.40211 * 177.03299 * 9 8 3 11 11 O 1.42096 * 106.40407 * 309.95586 * 9 8 3 12 12 N 1.65605 * 107.21437 * 63.49535 * 9 8 3 13 13 C 1.46498 * 120.00217 * 64.03100 * 12 9 8 14 14 C 1.52998 * 109.47331 * 163.70863 * 13 12 9 15 15 C 1.52997 * 109.47501 * 300.00290 * 14 13 12 16 16 C 1.53005 * 109.46555 * 60.00405 * 14 13 12 17 17 C 1.52999 * 109.47244 * 179.97438 * 14 13 12 18 18 C 1.50704 * 109.46928 * 180.02562 * 17 14 13 19 19 H 1.07992 * 120.00244 * 359.97438 * 18 17 14 20 20 C 1.37876 * 119.99723 * 180.02562 * 18 17 14 21 21 N 1.31515 * 119.99985 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00090 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46911 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46921 * 119.99959 * 22 20 18 25 25 H 1.48494 * 109.47190 * 239.99764 * 22 20 18 26 26 H 1.08996 * 109.47434 * 306.75572 * 1 2 3 27 27 H 1.09001 * 109.47078 * 66.76572 * 1 2 3 28 28 H 1.09006 * 109.46457 * 186.75938 * 1 2 3 29 29 H 1.08996 * 109.47307 * 240.00562 * 2 1 3 30 30 H 1.08990 * 109.47404 * 120.00013 * 2 1 3 31 31 H 1.07996 * 119.99990 * 0.03705 * 4 3 2 32 32 H 1.07997 * 120.00153 * 179.76769 * 5 4 3 33 33 H 1.08000 * 120.00335 * 180.02562 * 6 5 4 34 34 H 1.08005 * 120.00157 * 179.97438 * 7 6 5 35 35 H 0.96998 * 119.99626 * 244.02145 * 12 9 8 36 36 H 1.08998 * 109.47207 * 283.71664 * 13 12 9 37 37 H 1.09007 * 109.47001 * 43.71322 * 13 12 9 38 38 H 1.09002 * 109.47236 * 59.99688 * 15 14 13 39 39 H 1.08998 * 109.47291 * 179.97438 * 15 14 13 40 40 H 1.08990 * 109.46952 * 299.99692 * 15 14 13 41 41 H 1.08997 * 109.47777 * 59.99855 * 16 14 13 42 42 H 1.08998 * 109.47204 * 180.02562 * 16 14 13 43 43 H 1.09002 * 109.46999 * 299.99587 * 16 14 13 44 44 H 1.09007 * 109.46936 * 300.00070 * 17 14 13 45 45 H 1.08990 * 109.47112 * 60.00367 * 17 14 13 46 46 H 0.97002 * 119.99848 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2446 2.0791 -1.1972 5 6 2.7107 3.3802 -1.1972 6 6 2.9595 4.0254 0.0000 7 6 2.7417 3.3695 1.1969 8 6 2.2755 2.0679 1.1969 9 16 1.9978 1.2315 2.7228 10 8 2.4016 2.1263 3.7501 11 8 0.6920 0.6766 2.6444 12 7 3.0472 -0.0483 2.7783 13 6 4.4923 0.1901 2.8095 14 6 5.2097 -1.0835 3.2613 15 6 4.7266 -1.4723 4.6600 16 6 4.9011 -2.2174 2.2816 17 6 6.7190 -0.8346 3.2934 18 6 7.4257 -2.0894 3.7378 19 1 6.8553 -2.9754 3.9742 20 6 8.8003 -2.1057 3.8437 21 7 9.4947 -1.0265 3.5563 22 14 9.6762 -3.6607 4.3952 23 1 8.6756 -4.7267 4.6553 24 1 10.6092 -4.1075 3.3299 25 1 10.4401 -3.3841 5.6382 26 1 -0.3634 0.6149 0.8233 27 1 -0.3633 0.4054 -0.9443 28 1 -0.3632 -1.0206 0.1210 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0500 1.5752 -2.1324 32 1 2.8802 3.8931 -2.1324 33 1 3.3234 5.0423 0.0000 34 1 2.9364 3.8733 2.1321 35 1 2.7050 -0.9559 2.7902 36 1 4.8365 0.4671 1.8131 37 1 4.7122 0.9980 3.5076 38 1 3.6514 -1.6497 4.6367 39 1 5.2374 -2.3799 4.9816 40 1 4.9465 -0.6645 5.3579 41 1 5.2453 -1.9406 1.2851 42 1 5.4118 -3.1249 2.6036 43 1 3.8258 -2.3949 2.2583 44 1 7.0629 -0.5580 2.2967 45 1 6.9393 -0.0267 3.9910 46 1 10.4619 -1.0381 3.6304 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345041551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:50 Heat of formation + Delta-G solvation = -89.661108 kcal Electronic energy + Delta-G solvation = -26658.005177 eV Core-core repulsion = 23059.038227 eV Total energy + Delta-G solvation = -3598.966950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.43215 -39.20748 -38.40770 -36.97193 -35.41994 -34.94363 -33.63715 -32.23500 -30.34488 -28.95506 -27.90399 -27.29132 -25.04071 -24.63402 -24.20231 -22.16661 -20.57421 -19.90233 -18.90354 -18.34123 -18.29050 -17.37962 -16.79282 -16.51046 -16.21416 -15.79094 -15.58573 -15.50479 -14.93234 -14.84403 -14.57687 -14.41072 -14.24524 -13.96707 -13.89182 -13.43636 -13.25713 -13.20409 -13.10401 -13.02382 -12.91758 -12.64182 -12.62920 -12.60775 -12.28020 -12.16724 -12.05798 -11.92138 -11.78346 -11.64338 -11.44579 -10.93796 -10.81907 -10.48333 -10.38448 -10.34803 -9.80564 -8.11479 -6.17684 -0.63445 -0.16100 0.30989 1.42117 1.44273 1.55042 1.95790 2.45999 2.47957 2.75407 3.23549 3.37896 3.62655 3.79604 3.93173 4.00447 4.14778 4.21323 4.25090 4.35916 4.43800 4.46369 4.52698 4.58253 4.76437 4.79984 4.81421 4.91764 4.95844 5.02780 5.05186 5.07870 5.18445 5.19504 5.23522 5.37252 5.39686 5.50993 5.54741 5.55317 5.58606 5.61969 5.86478 5.89993 5.94597 6.08360 6.36588 6.97432 7.49600 9.00948 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.016913 B = 0.003505 C = 0.003360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.085559 B = 7986.847324 C = 8331.521413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.013 3.987 4 C -0.146 4.146 5 C -0.060 4.060 6 C -0.152 4.152 7 C -0.042 4.042 8 C -0.688 4.688 9 S 2.704 3.296 10 O -0.996 6.996 11 O -0.969 6.969 12 N -1.102 6.102 13 C 0.136 3.864 14 C -0.061 4.061 15 C -0.127 4.127 16 C -0.124 4.124 17 C 0.038 3.962 18 C -0.512 4.512 19 H 0.069 0.931 20 C -0.002 4.002 21 N -0.936 5.936 22 Si 0.953 3.047 23 H -0.260 1.260 24 H -0.283 1.283 25 H -0.286 1.286 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.425 0.575 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.068 0.932 44 H -0.005 1.005 45 H -0.012 1.012 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 5.388 -11.440 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.012 3.988 4 C -0.164 4.164 5 C -0.077 4.077 6 C -0.170 4.170 7 C -0.062 4.062 8 C -0.777 4.777 9 S 2.796 3.204 10 O -0.986 6.986 11 O -0.959 6.959 12 N -0.865 5.865 13 C 0.010 3.990 14 C -0.062 4.062 15 C -0.185 4.185 16 C -0.181 4.181 17 C 0.000 4.000 18 C -0.550 4.550 19 H 0.087 0.913 20 C -0.199 4.199 21 N -0.578 5.578 22 Si 0.779 3.221 23 H -0.184 1.184 24 H -0.210 1.210 25 H -0.212 1.212 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.155 0.845 35 H 0.264 0.736 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.014 0.986 45 H 0.006 0.994 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -17.994 5.841 -10.778 21.773 hybrid contribution 1.370 -0.564 -0.041 1.482 sum -16.624 5.277 -10.819 20.525 Atomic orbital electron populations 1.21867 0.92909 1.03452 1.02655 1.21074 0.98074 0.91272 1.04969 1.19824 0.91086 0.95895 0.92033 1.21538 1.01023 0.95783 0.98101 1.21898 0.92239 0.94237 0.99365 1.21621 1.01580 1.01813 0.92013 1.21169 0.92186 0.92252 1.00557 1.30531 1.19595 1.08183 1.19373 1.01281 0.72568 0.72703 0.73801 1.93521 1.83442 1.65912 1.55729 1.93562 1.36563 1.78273 1.87472 1.55301 1.17072 1.22685 1.91478 1.21291 0.78006 0.98730 1.01020 1.20645 0.95404 0.94018 0.96156 1.21732 1.00048 1.01105 0.95569 1.21709 1.00535 0.97861 0.97992 1.19013 0.90395 0.95614 0.94980 1.21641 0.91534 0.98606 1.43218 0.91307 1.25857 0.98950 0.98924 0.96142 1.70107 1.06687 1.29891 1.51097 0.85572 0.78679 0.80260 0.77580 1.18406 1.20952 1.21238 0.91986 0.91569 0.91016 0.87457 0.91193 0.82562 0.81994 0.82788 0.84471 0.73622 0.91418 0.91850 0.91733 0.92863 0.94500 0.93350 0.93021 0.91349 0.98644 0.99373 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.40 71.98 0.68 -2.14 16 2 C -0.12 -2.18 5.31 29.85 0.16 -2.02 16 3 C 0.01 0.28 5.13 -19.86 -0.10 0.18 16 4 C -0.15 -2.48 9.71 22.27 0.22 -2.27 16 5 C -0.06 -0.92 10.05 22.27 0.22 -0.70 16 6 C -0.15 -2.79 10.05 22.27 0.22 -2.56 16 7 C -0.04 -1.01 9.55 22.27 0.21 -0.80 16 8 C -0.69 -17.29 5.86 22.27 0.13 -17.16 16 9 S 2.70 75.77 4.92 -56.49 -0.28 75.50 16 10 O -1.00 -34.53 16.46 -128.00 -2.11 -36.64 16 11 O -0.97 -28.29 14.20 -128.00 -1.82 -30.11 16 12 N -1.10 -29.00 4.08 -187.49 -0.77 -29.76 16 13 C 0.14 4.34 5.11 86.38 0.44 4.78 16 14 C -0.06 -2.23 0.55 -52.18 -0.03 -2.25 16 15 C -0.13 -4.50 8.06 71.98 0.58 -3.92 16 16 C -0.12 -3.96 8.05 71.98 0.58 -3.38 16 17 C 0.04 1.85 4.04 29.85 0.12 1.97 16 18 C -0.51 -27.04 7.65 25.60 0.20 -26.85 16 19 H 0.07 3.46 5.68 -2.91 -0.02 3.44 16 20 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 21 N -0.94 -55.77 13.29 21.45 0.28 -55.49 16 22 Si 0.95 43.33 29.54 68.60 2.03 45.35 16 23 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 26 H 0.06 1.44 5.98 -2.39 -0.01 1.43 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.11 1.52 8.09 -2.39 -0.02 1.50 16 30 H 0.07 1.36 4.97 -2.39 -0.01 1.35 16 31 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.14 3.28 7.34 -2.91 -0.02 3.26 16 35 H 0.42 9.45 6.08 -96.75 -0.59 8.86 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.06 2.20 7.75 -2.38 -0.02 2.18 16 38 H 0.06 1.85 7.23 -2.39 -0.02 1.83 16 39 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 40 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.82 6.62 -2.39 -0.02 1.81 16 43 H 0.07 1.66 6.59 -2.39 -0.02 1.65 16 44 H 0.00 -0.26 8.14 -2.38 -0.02 -0.27 16 45 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 46 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -70.19 370.17 1.82 -68.37 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.39 Total: 19.54 kcal Atomic # 6 Polarization: -60.85 SS G_CDS: 4.09 Total: -56.76 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -0.48 Total: -85.25 kcal Atomic # 8 Polarization: -62.82 SS G_CDS: -3.92 Total: -66.74 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 75.77 SS G_CDS: -0.28 Total: 75.50 kcal Total: -70.19 1.82 -68.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345041551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.293 kcal (2) G-P(sol) polarization free energy of solvation -70.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds