Wall clock time and date at job start Tue Mar 31 2020 15:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47257 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99935 * 2 1 3 5 5 N 1.46495 * 109.47074 * 64.99836 * 4 2 1 6 6 C 1.46497 * 120.00034 * 84.99933 * 5 4 2 7 7 C 1.50707 * 109.47012 * 84.99956 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00154 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.98090 * 7 6 5 13 13 S 1.65603 * 120.00270 * 265.00479 * 5 4 2 14 14 O 1.42101 * 104.27483 * 26.06764 * 13 5 4 15 15 O 1.42088 * 104.28003 * 153.92863 * 13 5 4 16 16 C 1.81404 * 104.44617 * 270.00083 * 13 5 4 17 17 C 1.52999 * 109.47179 * 179.97438 * 16 13 5 18 18 C 1.50695 * 109.47379 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99498 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00256 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00246 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00057 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46718 * 90.00000 * 22 20 18 24 24 H 1.48493 * 109.47110 * 210.00019 * 22 20 18 25 25 H 1.48501 * 109.46589 * 330.00090 * 22 20 18 26 26 H 1.09001 * 109.47362 * 300.00421 * 1 2 3 27 27 H 1.09000 * 109.47293 * 59.99938 * 1 2 3 28 28 H 1.09002 * 109.47561 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46933 * 239.99898 * 2 1 3 30 30 H 1.08998 * 109.47496 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46743 * 299.99772 * 3 2 1 32 32 H 1.08991 * 109.47227 * 59.99571 * 3 2 1 33 33 H 1.09003 * 109.46884 * 304.99734 * 4 2 1 34 34 H 1.08999 * 109.47200 * 185.00296 * 4 2 1 35 35 H 1.09005 * 109.47643 * 325.00416 * 6 5 4 36 36 H 1.09000 * 109.47513 * 204.99580 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 1.08999 * 109.46982 * 299.99555 * 16 13 5 43 43 H 1.08999 * 109.47427 * 59.99421 * 16 13 5 44 44 H 1.08999 * 109.47061 * 299.99826 * 17 16 13 45 45 H 1.09005 * 109.46764 * 59.99659 * 17 16 13 46 46 H 0.96997 * 120.00442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4891 -3.0926 0.4662 7 6 3.5906 -3.5820 1.3709 8 6 3.3924 -4.7007 2.1584 9 6 4.4029 -5.1499 2.9878 10 6 5.6118 -4.4808 3.0294 11 6 5.8081 -3.3589 2.2460 12 6 4.7992 -2.9124 1.4130 13 16 0.2684 -2.6435 1.9431 14 8 -0.5580 -1.4880 1.9784 15 8 -0.1200 -3.8001 1.2150 16 6 0.8034 -3.0947 3.6167 17 6 -0.4008 -3.5879 4.4215 18 6 0.0437 -3.9633 5.8116 19 1 1.0813 -3.8601 6.0930 20 6 -0.8742 -4.4386 6.7240 21 7 -0.4864 -4.7658 7.9373 22 14 -2.6687 -4.6179 6.2369 23 1 -2.8961 -5.9738 5.6757 24 1 -3.5277 -4.4266 7.4329 25 1 -3.0085 -3.5956 5.2147 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.9250 -2.6080 -0.4075 36 1 1.8793 -3.9376 0.1465 37 1 2.4480 -5.2238 2.1256 38 1 4.2479 -6.0237 3.6034 39 1 6.4014 -4.8320 3.6772 40 1 6.7510 -2.8335 2.2817 41 1 4.9543 -2.0389 0.7973 42 1 1.5505 -3.8862 3.5583 43 1 1.2355 -2.2227 4.1076 44 1 -1.1476 -2.7961 4.4799 45 1 -0.8332 -4.4598 3.9307 46 1 -1.1321 -5.0998 8.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348102451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:20 Heat of formation + Delta-G solvation = -58.713897 kcal Electronic energy + Delta-G solvation = -26852.963045 eV Core-core repulsion = 23255.338067 eV Total energy + Delta-G solvation = -3597.624978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.43592 -37.60588 -36.71854 -35.54074 -34.24741 -33.93410 -31.50001 -31.13690 -30.88381 -27.08505 -26.98561 -25.97883 -24.70442 -22.57334 -21.53526 -21.06799 -20.15839 -18.56189 -17.73546 -16.95453 -16.78825 -16.32346 -15.85918 -15.11129 -14.98011 -14.83368 -14.75674 -14.31429 -14.01543 -13.67395 -13.39519 -13.31880 -12.92585 -12.81088 -12.60797 -12.41038 -12.34718 -12.01462 -11.88933 -11.81589 -11.58499 -11.52429 -11.25153 -11.23320 -11.11592 -10.99634 -10.91042 -10.68966 -10.55684 -10.42361 -10.13530 -9.69391 -9.40597 -8.93134 -8.86776 -8.76611 -8.65702 -6.15902 -4.16773 0.63915 1.30618 1.40688 2.93338 3.26142 3.33590 3.37874 3.81185 4.17815 4.36084 4.48975 4.60045 4.71122 4.85195 4.89297 4.95529 5.00917 5.09893 5.15730 5.18699 5.30928 5.47196 5.51316 5.53712 5.57853 5.61245 5.64204 5.68292 5.79367 5.85601 5.96323 5.98303 6.01148 6.07621 6.12562 6.30568 6.33116 6.44615 6.52572 6.56356 6.63307 6.68468 6.83198 6.94928 6.99705 7.55653 8.38090 8.85902 9.44000 10.96555 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.005345 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.220962 B = 5237.297583 C = 7150.914390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.129 3.871 5 N -0.995 5.995 6 C 0.155 3.845 7 C -0.111 4.111 8 C -0.113 4.113 9 C -0.111 4.111 10 C -0.117 4.117 11 C -0.123 4.123 12 C -0.106 4.106 13 S 2.580 3.420 14 O -0.954 6.954 15 O -0.966 6.966 16 C -0.586 4.586 17 C -0.005 4.005 18 C -0.516 4.516 19 H 0.078 0.922 20 C 0.073 3.927 21 N -0.896 5.896 22 Si 0.867 3.133 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.262 1.262 26 H 0.071 0.929 27 H 0.043 0.957 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.031 0.969 45 H 0.026 0.974 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.557 6.780 -16.237 21.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.004 3.996 5 N -0.829 5.829 6 C 0.030 3.970 7 C -0.113 4.113 8 C -0.131 4.131 9 C -0.129 4.129 10 C -0.136 4.136 11 C -0.142 4.142 12 C -0.124 4.124 13 S 2.678 3.322 14 O -0.944 6.944 15 O -0.956 6.956 16 C -0.719 4.719 17 C -0.044 4.044 18 C -0.555 4.555 19 H 0.096 0.904 20 C -0.130 4.130 21 N -0.534 5.534 22 Si 0.693 3.307 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.186 1.186 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.145 0.855 38 H 0.144 0.856 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.049 0.951 45 H 0.044 0.956 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.624 6.706 -16.514 20.749 hybrid contribution -0.278 -0.259 0.533 0.654 sum 10.345 6.447 -15.981 20.099 Atomic orbital electron populations 1.21969 0.93866 1.02414 1.01640 1.21530 0.97343 0.95977 0.98565 1.21774 1.00545 0.95772 1.02132 1.21365 1.00483 0.79261 0.98532 1.57710 1.43148 1.14218 1.67830 1.20244 0.90793 0.92961 0.92991 1.20353 0.95788 0.96012 0.99098 1.21270 0.99565 0.96367 0.95931 1.21233 0.93265 1.00163 0.98217 1.21190 0.97506 0.95866 0.99012 1.21121 0.99021 0.96975 0.97035 1.20977 0.93016 0.99266 0.99171 1.05973 0.73960 0.74365 0.77857 1.93610 1.64789 1.48696 1.87304 1.93523 1.80611 1.51374 1.70119 1.30423 1.10859 1.11314 1.19280 1.19390 0.91026 0.96645 0.97355 1.20837 0.97244 1.44081 0.93381 0.90434 1.24969 0.98806 0.94476 0.94755 1.69877 1.35024 1.43868 1.04622 0.86960 0.85357 0.79588 0.78778 1.19656 1.20731 1.18641 0.91016 0.93821 0.92866 0.91189 0.92827 0.92596 0.92323 0.89946 0.90580 0.89408 0.87963 0.85509 0.85602 0.86169 0.86283 0.86255 0.85681 0.85837 0.95058 0.95615 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 7.57 37.15 0.28 -1.58 16 2 C -0.11 -1.20 3.12 -90.62 -0.28 -1.48 16 3 C -0.14 -1.23 9.19 37.16 0.34 -0.89 16 4 C 0.13 1.44 4.96 -4.04 -0.02 1.42 16 5 N -1.00 -12.99 2.42 -115.66 -0.28 -13.27 16 6 C 0.16 1.77 5.78 -5.19 -0.03 1.74 16 7 C -0.11 -1.30 5.46 -104.62 -0.57 -1.88 16 8 C -0.11 -1.49 8.00 -39.58 -0.32 -1.81 16 9 C -0.11 -1.40 10.05 -39.58 -0.40 -1.80 16 10 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 11 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 12 C -0.11 -1.09 9.37 -39.58 -0.37 -1.46 16 13 S 2.58 44.79 4.74 -107.50 -0.51 44.28 16 14 O -0.95 -18.00 13.01 -57.54 -0.75 -18.75 16 15 O -0.97 -18.78 16.53 -57.54 -0.95 -19.74 16 16 C -0.59 -11.21 6.12 37.16 0.23 -10.98 16 17 C 0.00 -0.12 4.05 -27.89 -0.11 -0.23 16 18 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 19 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 20 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 21 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 22 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 26 H 0.07 1.03 7.39 -51.93 -0.38 0.64 16 27 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.81 5.68 -51.93 -0.29 0.51 16 29 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.96 7.61 -51.93 -0.40 0.57 16 34 H 0.08 0.68 7.61 -51.93 -0.40 0.29 16 35 H 0.09 0.77 7.99 -51.93 -0.41 0.36 16 36 H 0.10 1.25 6.76 -51.93 -0.35 0.90 16 37 H 0.13 1.73 7.69 -52.48 -0.40 1.32 16 38 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.96 7.90 -52.49 -0.41 0.55 16 42 H 0.12 2.27 5.88 -51.92 -0.31 1.96 16 43 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 44 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 45 H 0.03 0.61 7.57 -51.93 -0.39 0.22 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -33.03 376.31 -10.70 -43.74 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -7.51 Total: 2.63 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: -2.48 Total: -35.13 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.49 Total: -39.59 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.70 Total: -38.48 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 44.79 SS G_CDS: -0.51 Total: 44.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.03 -10.70 -43.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348102451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.975 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds