Wall clock time and date at job start Tue Mar 31 2020 15:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47257 * 2 1 4 4 C 1.53004 * 109.47312 * 119.99935 * 2 1 3 5 5 N 1.46495 * 109.47074 * 64.99836 * 4 2 1 6 6 C 1.46497 * 120.00034 * 84.99933 * 5 4 2 7 7 C 1.50707 * 109.47012 * 84.99956 * 6 5 4 8 8 C 1.38238 * 119.99792 * 90.00154 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.98090 * 7 6 5 13 13 S 1.65603 * 120.00270 * 265.00479 * 5 4 2 14 14 O 1.42101 * 104.27483 * 26.06764 * 13 5 4 15 15 O 1.42088 * 104.28003 * 153.92863 * 13 5 4 16 16 C 1.81404 * 104.44617 * 270.00083 * 13 5 4 17 17 C 1.52999 * 109.47179 * 179.97438 * 16 13 5 18 18 C 1.50695 * 109.47379 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99498 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00256 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00246 * 180.02562 * 20 18 17 22 22 Si 1.86806 * 120.00057 * 0.02562 * 20 18 17 23 23 H 1.48502 * 109.46718 * 90.00000 * 22 20 18 24 24 H 1.48493 * 109.47110 * 210.00019 * 22 20 18 25 25 H 1.48501 * 109.46589 * 330.00090 * 22 20 18 26 26 H 1.09001 * 109.47362 * 300.00421 * 1 2 3 27 27 H 1.09000 * 109.47293 * 59.99938 * 1 2 3 28 28 H 1.09002 * 109.47561 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46933 * 239.99898 * 2 1 3 30 30 H 1.08998 * 109.47496 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46743 * 299.99772 * 3 2 1 32 32 H 1.08991 * 109.47227 * 59.99571 * 3 2 1 33 33 H 1.09003 * 109.46884 * 304.99734 * 4 2 1 34 34 H 1.08999 * 109.47200 * 185.00296 * 4 2 1 35 35 H 1.09005 * 109.47643 * 325.00416 * 6 5 4 36 36 H 1.09000 * 109.47513 * 204.99580 * 6 5 4 37 37 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 38 38 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 39 39 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 40 40 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 41 41 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 42 42 H 1.08999 * 109.46982 * 299.99555 * 16 13 5 43 43 H 1.08999 * 109.47427 * 59.99421 * 16 13 5 44 44 H 1.08999 * 109.47061 * 299.99826 * 17 16 13 45 45 H 1.09005 * 109.46764 * 59.99659 * 17 16 13 46 46 H 0.96997 * 120.00442 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4891 -3.0926 0.4662 7 6 3.5906 -3.5820 1.3709 8 6 3.3924 -4.7007 2.1584 9 6 4.4029 -5.1499 2.9878 10 6 5.6118 -4.4808 3.0294 11 6 5.8081 -3.3589 2.2460 12 6 4.7992 -2.9124 1.4130 13 16 0.2684 -2.6435 1.9431 14 8 -0.5580 -1.4880 1.9784 15 8 -0.1200 -3.8001 1.2150 16 6 0.8034 -3.0947 3.6167 17 6 -0.4008 -3.5879 4.4215 18 6 0.0437 -3.9633 5.8116 19 1 1.0813 -3.8601 6.0930 20 6 -0.8742 -4.4386 6.7240 21 7 -0.4864 -4.7658 7.9373 22 14 -2.6687 -4.6179 6.2369 23 1 -2.8961 -5.9738 5.6757 24 1 -3.5277 -4.4266 7.4329 25 1 -3.0085 -3.5956 5.2147 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6054 -0.2617 2.1370 34 1 3.1263 -0.6443 1.2952 35 1 2.9250 -2.6080 -0.4075 36 1 1.8793 -3.9376 0.1465 37 1 2.4480 -5.2238 2.1256 38 1 4.2479 -6.0237 3.6034 39 1 6.4014 -4.8320 3.6772 40 1 6.7510 -2.8335 2.2817 41 1 4.9543 -2.0389 0.7973 42 1 1.5505 -3.8862 3.5583 43 1 1.2355 -2.2227 4.1076 44 1 -1.1476 -2.7961 4.4799 45 1 -0.8332 -4.4598 3.9307 46 1 -1.1321 -5.0998 8.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348102451.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:19 Heat of formation + Delta-G solvation = -78.404121 kcal Electronic energy + Delta-G solvation = -26853.816877 eV Core-core repulsion = 23255.338067 eV Total energy + Delta-G solvation = -3598.478810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.31493 -38.65127 -38.05200 -36.99802 -35.93008 -35.14156 -33.51302 -32.05192 -31.76089 -28.10307 -27.83557 -27.77003 -25.69972 -23.47075 -23.09810 -22.27792 -21.08468 -19.82645 -19.37716 -18.57797 -17.69567 -17.53177 -17.24184 -16.44581 -16.10354 -16.04983 -15.81464 -15.63828 -15.30440 -14.96892 -14.82378 -14.27805 -14.25964 -13.86165 -13.72985 -13.71969 -13.44821 -13.31580 -13.20185 -13.08211 -13.03507 -12.78976 -12.61135 -12.49341 -12.30609 -12.23208 -11.95172 -11.90840 -11.77856 -11.71413 -11.64057 -11.42307 -11.20576 -10.87037 -9.97489 -9.77027 -9.68092 -8.38920 -6.44640 -0.75339 0.40497 0.53115 1.28770 1.30356 1.40746 1.72046 2.26769 2.76182 2.91901 2.94643 3.15311 3.64708 3.84335 3.90986 3.97393 4.01173 4.09022 4.15906 4.18825 4.32012 4.32549 4.50229 4.51229 4.64250 4.71289 4.76033 4.80659 4.92971 4.93780 4.97795 5.01381 5.06392 5.11556 5.13486 5.18555 5.25280 5.32366 5.44068 5.47767 5.59723 5.63828 5.65359 5.67262 5.75759 6.14802 6.15018 6.60479 7.19532 8.76862 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.010182 B = 0.005345 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.220962 B = 5237.297583 C = 7150.914390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.119 3.881 5 N -0.982 5.982 6 C 0.153 3.847 7 C -0.116 4.116 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.125 4.125 11 C -0.123 4.123 12 C -0.099 4.099 13 S 2.604 3.396 14 O -0.968 6.968 15 O -0.988 6.988 16 C -0.596 4.596 17 C -0.011 4.011 18 C -0.525 4.525 19 H 0.046 0.954 20 C 0.017 3.983 21 N -0.939 5.939 22 Si 0.922 3.078 23 H -0.260 1.260 24 H -0.271 1.271 25 H -0.251 1.251 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.149 0.851 41 H 0.154 0.846 42 H 0.128 0.872 43 H 0.131 0.869 44 H 0.031 0.969 45 H 0.026 0.974 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.924 8.654 -18.674 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.130 4.130 3 C -0.199 4.199 4 C -0.005 4.005 5 N -0.819 5.819 6 C 0.028 3.972 7 C -0.118 4.118 8 C -0.157 4.157 9 C -0.153 4.153 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.118 4.118 13 S 2.701 3.299 14 O -0.958 6.958 15 O -0.978 6.978 16 C -0.726 4.726 17 C -0.050 4.050 18 C -0.564 4.564 19 H 0.064 0.936 20 C -0.182 4.182 21 N -0.578 5.578 22 Si 0.745 3.255 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.175 1.175 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.108 0.892 37 H 0.127 0.873 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.167 0.833 41 H 0.172 0.828 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.990 8.571 -18.929 23.990 hybrid contribution -0.558 -0.813 1.263 1.602 sum 11.431 7.759 -17.666 22.427 Atomic orbital electron populations 1.21992 0.96297 1.00675 1.01428 1.21532 0.95177 0.97517 0.98730 1.21751 1.01872 0.94052 1.02199 1.21696 1.02494 0.77580 0.98765 1.57395 1.42332 1.15508 1.66643 1.20463 0.90282 0.92628 0.93802 1.20411 0.96764 0.95698 0.98953 1.21305 0.99211 0.97711 0.97428 1.21350 0.94323 1.00802 0.98841 1.21466 0.97134 0.96254 0.99468 1.21518 1.00228 0.96301 0.95991 1.21345 0.91885 0.99676 0.98880 1.05032 0.74698 0.73567 0.76653 1.93598 1.66104 1.48935 1.87196 1.93489 1.81666 1.52699 1.69982 1.30475 1.09093 1.11738 1.21309 1.19316 0.93088 0.96737 0.95890 1.21111 0.95969 1.43727 0.95592 0.93614 1.25835 1.03465 0.94227 0.94670 1.70001 1.36755 1.45215 1.05857 0.86069 0.79981 0.80343 0.79151 1.18448 1.19567 1.17451 0.92870 0.92457 0.95307 0.89504 0.90663 0.91925 0.92981 0.90832 0.87206 0.85484 0.89231 0.87330 0.86300 0.84610 0.83313 0.82846 0.85360 0.85056 0.95048 0.95550 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 7.57 71.98 0.55 -3.07 16 2 C -0.11 -1.93 3.12 -10.79 -0.03 -1.96 16 3 C -0.14 -1.86 9.19 71.98 0.66 -1.20 16 4 C 0.12 2.28 4.96 86.38 0.43 2.71 16 5 N -0.98 -23.74 2.42 -519.84 -1.26 -25.00 16 6 C 0.15 3.11 5.78 85.64 0.50 3.60 16 7 C -0.12 -2.52 5.46 -19.86 -0.11 -2.63 16 8 C -0.14 -3.71 8.00 22.27 0.18 -3.53 16 9 C -0.14 -3.50 10.05 22.27 0.22 -3.28 16 10 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 11 C -0.12 -2.11 10.05 22.27 0.22 -1.88 16 12 C -0.10 -1.67 9.37 22.27 0.21 -1.46 16 13 S 2.60 89.88 4.74 -56.49 -0.27 89.61 16 14 O -0.97 -36.37 13.01 -127.65 -1.66 -38.03 16 15 O -0.99 -38.63 16.53 -127.65 -2.11 -40.74 16 16 C -0.60 -23.29 6.12 71.98 0.44 -22.85 16 17 C -0.01 -0.56 4.05 29.85 0.12 -0.44 16 18 C -0.53 -30.53 9.66 25.60 0.25 -30.28 16 19 H 0.05 2.86 7.99 -2.91 -0.02 2.84 16 20 C 0.02 0.98 5.47 84.65 0.46 1.45 16 21 N -0.94 -58.40 13.96 21.44 0.30 -58.10 16 22 Si 0.92 44.59 27.47 68.60 1.88 46.47 16 23 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 24 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 25 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 26 H 0.05 1.49 7.39 -2.39 -0.02 1.47 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.03 0.84 5.68 -2.39 -0.01 0.82 16 29 H 0.09 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 1.57 7.61 -2.39 -0.02 1.55 16 34 H 0.11 1.40 7.61 -2.39 -0.02 1.39 16 35 H 0.13 1.64 7.99 -2.38 -0.02 1.62 16 36 H 0.09 2.09 6.76 -2.39 -0.02 2.08 16 37 H 0.11 3.20 7.69 -2.91 -0.02 3.17 16 38 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.15 1.52 7.90 -2.91 -0.02 1.50 16 42 H 0.13 4.87 5.88 -2.39 -0.01 4.85 16 43 H 0.13 4.78 8.14 -2.39 -0.02 4.77 16 44 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 45 H 0.03 1.27 7.57 -2.38 -0.02 1.25 16 46 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.96 376.31 2.09 -71.87 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: 0.89 Total: 21.17 kcal Atomic # 6 Polarization: -71.56 SS G_CDS: 4.32 Total: -67.24 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -0.96 Total: -83.11 kcal Atomic # 8 Polarization: -75.00 SS G_CDS: -3.77 Total: -78.77 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Atomic # 16 Polarization: 89.88 SS G_CDS: -0.27 Total: 89.61 kcal Total: -73.96 2.09 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348102451.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.537 kcal (2) G-P(sol) polarization free energy of solvation -73.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds