Wall clock time and date at job start Tue Mar 31 2020 15:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00006 * 2 1 4 4 C 1.50705 * 119.99725 * 179.97438 * 2 1 3 5 5 N 1.46897 * 109.46537 * 94.46689 * 4 2 1 6 6 C 1.46901 * 111.00515 * 301.24369 * 5 4 2 7 7 C 1.53000 * 109.46767 * 293.10074 * 6 5 4 8 8 C 1.53007 * 109.46813 * 185.18486 * 7 6 5 9 9 S 1.80999 * 109.46861 * 179.97438 * 8 7 6 10 10 C 1.76200 * 99.99970 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99861 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00366 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99886 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00321 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47383 * 59.99711 * 14 12 10 16 16 H 1.48500 * 109.47543 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47042 * 299.99809 * 14 12 10 18 18 C 1.46904 * 111.00347 * 65.19795 * 5 4 2 19 19 C 1.50707 * 109.46640 * 71.01014 * 18 5 4 20 20 C 1.34506 * 125.79313 * 90.00633 * 19 18 5 21 21 C 1.41384 * 106.84452 * 180.02562 * 20 19 18 22 22 C 1.34520 * 106.83701 * 0.22391 * 21 20 19 23 23 C 1.50701 * 125.78677 * 179.76959 * 22 21 20 24 24 O 1.42900 * 109.46840 * 90.00013 * 23 22 21 25 25 O 1.34299 * 108.41984 * 359.63568 * 22 21 20 26 26 H 1.08002 * 120.00216 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99778 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47120 * 275.58603 * 3 2 1 29 29 H 1.08997 * 109.47629 * 35.58544 * 3 2 1 30 30 H 1.09001 * 109.47352 * 155.58832 * 3 2 1 31 31 H 1.09001 * 109.47168 * 334.46923 * 4 2 1 32 32 H 1.08995 * 109.46942 * 214.46397 * 4 2 1 33 33 H 1.08995 * 109.46883 * 53.09606 * 6 5 4 34 34 H 1.08997 * 109.47655 * 173.10052 * 6 5 4 35 35 H 1.09002 * 109.47333 * 305.18494 * 7 6 5 36 36 H 1.08997 * 109.47302 * 65.19078 * 7 6 5 37 37 H 1.09002 * 109.47177 * 300.00103 * 8 7 6 38 38 H 1.08997 * 109.46704 * 60.00225 * 8 7 6 39 39 H 0.97003 * 120.00400 * 180.02562 * 13 12 10 40 40 H 1.08996 * 109.46812 * 311.01312 * 18 5 4 41 41 H 1.09000 * 109.47383 * 191.00485 * 18 5 4 42 42 H 1.07998 * 126.57740 * 359.97438 * 20 19 18 43 43 H 1.08000 * 126.57862 * 179.97438 * 21 20 19 44 44 H 1.08998 * 109.46856 * 210.00054 * 23 22 21 45 45 H 1.09003 * 109.46988 * 330.00569 * 23 22 21 46 46 H 0.96694 * 114.00151 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4016 -1.6758 -1.3801 6 6 1.1912 -1.8032 -2.2026 7 6 0.3674 -2.9972 -1.7161 8 6 -0.8251 -3.2089 -2.6511 9 16 -1.7992 -4.6219 -2.0761 10 6 -3.0686 -4.6360 -3.2980 11 1 -3.0650 -3.9004 -4.0889 12 6 -4.0730 -5.5923 -3.2443 13 7 -4.0771 -6.4891 -2.2808 14 14 -5.4183 -5.6077 -4.5401 15 1 -4.8113 -5.8000 -5.8817 16 1 -6.3630 -6.7187 -4.2598 17 1 -6.1507 -4.3162 -4.5087 18 6 3.3395 -0.7110 -1.9696 19 6 4.6936 -0.8702 -1.3275 20 6 5.6752 -1.6852 -1.7533 21 6 6.7609 -1.5189 -0.8629 22 6 6.3758 -0.6157 0.0567 23 6 7.2084 -0.1259 1.2133 24 8 7.9583 1.0212 0.8083 25 8 5.1246 -0.2226 -0.2326 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 2.1585 1.6697 -1.0228 29 1 1.5214 2.0376 0.5980 30 1 3.0556 1.1518 0.4247 31 1 1.4420 -2.0833 0.4439 32 1 2.9789 -1.1959 0.5821 33 1 0.5971 -0.8933 -2.1180 34 1 1.4739 -1.9570 -3.2439 35 1 0.9904 -3.8916 -1.7136 36 1 0.0070 -2.8026 -0.7061 37 1 -1.4481 -2.3145 -2.6536 38 1 -0.4646 -3.4035 -3.6612 39 1 -4.7789 -7.1577 -2.2434 40 1 2.9736 0.3016 -1.7997 41 1 3.4220 -0.8926 -3.0412 42 1 5.6405 -2.3414 -2.6103 43 1 7.7146 -2.0234 -0.9096 44 1 6.5550 0.1418 2.0436 45 1 7.8921 -0.9142 1.5284 46 1 8.5181 1.3910 1.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352815602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:26 Heat of formation + Delta-G solvation = -20.178244 kcal Electronic energy + Delta-G solvation = -24975.712686 eV Core-core repulsion = 21379.758739 eV Total energy + Delta-G solvation = -3595.953947 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.75566 -38.98647 -37.25657 -34.45633 -33.41477 -32.97801 -32.40585 -30.93046 -28.43973 -27.06355 -26.88250 -25.59003 -24.65769 -22.60042 -21.80607 -20.86345 -20.26074 -18.36642 -18.06372 -17.44326 -16.94345 -16.44592 -16.03040 -15.53666 -15.16379 -14.98765 -14.78801 -14.70357 -14.18992 -14.12375 -13.68594 -13.34035 -13.26176 -12.96215 -12.94583 -12.70177 -12.32582 -12.05520 -11.87933 -11.78862 -11.73349 -11.38196 -11.31660 -11.23590 -11.03272 -10.79349 -10.64389 -10.61456 -10.24402 -10.00453 -9.54133 -9.14996 -9.03307 -8.62490 -8.34171 -8.26779 -6.50235 -6.20686 -3.90683 1.43007 2.12437 2.40045 2.65185 3.22979 3.24300 3.28909 3.57261 3.96840 4.10130 4.24906 4.47718 4.60784 4.75548 4.78183 4.81716 4.86108 4.93927 5.12871 5.15083 5.21771 5.26381 5.40020 5.40621 5.46668 5.49173 5.63701 5.66890 5.78111 5.80204 5.85399 5.88471 5.90355 5.94367 5.95873 6.11516 6.35672 6.37223 6.54196 6.62593 6.70199 6.80519 6.91370 7.03443 7.07651 7.08656 7.62084 8.38325 9.25420 10.87383 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002194 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.277732 B =12760.036980 C =13266.605129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.173 4.173 3 C -0.118 4.118 4 C 0.084 3.916 5 N -0.521 5.521 6 C 0.053 3.947 7 C -0.092 4.092 8 C -0.111 4.111 9 S -0.132 6.132 10 C -0.516 4.516 11 H 0.071 0.929 12 C 0.071 3.929 13 N -0.870 5.870 14 Si 0.918 3.082 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.120 3.880 19 C 0.014 3.986 20 C -0.197 4.197 21 C -0.181 4.181 22 C -0.030 4.030 23 C 0.160 3.840 24 O -0.568 6.568 25 O -0.169 6.169 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.267 0.733 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.150 0.850 43 H 0.147 0.853 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.852 15.413 6.663 27.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.174 4.174 4 C -0.043 4.043 5 N -0.243 5.243 6 C -0.076 4.076 7 C -0.130 4.130 8 C -0.261 4.261 9 S 0.097 5.903 10 C -0.664 4.664 11 H 0.089 0.911 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.744 3.256 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.200 1.200 18 C -0.007 4.007 19 C -0.036 4.036 20 C -0.217 4.217 21 C -0.201 4.201 22 C -0.080 4.080 23 C 0.083 3.917 24 O -0.375 6.375 25 O -0.065 6.065 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.082 0.918 41 H 0.121 0.879 42 H 0.168 0.832 43 H 0.165 0.835 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 21.677 14.179 7.239 26.895 hybrid contribution -1.102 1.445 -1.481 2.344 sum 20.575 15.624 5.758 26.469 Atomic orbital electron populations 1.23938 0.95284 1.02469 0.99220 1.22388 0.96038 0.96896 1.02112 1.20970 1.00320 0.94682 1.01454 1.21408 0.99509 0.93032 0.90376 1.62403 1.13868 1.45681 1.02362 1.22314 0.89632 0.98852 0.96793 1.21267 0.95213 0.97648 0.98920 1.23221 0.98960 1.02768 1.01121 1.84632 1.28993 1.35804 1.40916 1.22648 1.11436 1.18877 1.13470 0.91063 1.25010 0.97718 0.94704 0.96387 1.70013 1.33356 1.16008 1.31161 0.86235 0.80511 0.77842 0.80996 1.19946 1.20843 1.19982 1.20744 0.85606 0.96590 0.97744 1.22301 0.97023 0.96434 0.87882 1.21574 0.93466 1.03223 1.03432 1.21607 1.00639 1.01825 0.95992 1.21838 0.84631 1.00675 1.00877 1.20253 0.91918 0.88552 0.91008 1.86569 1.62234 1.45956 1.42702 1.83944 1.27747 1.55367 1.39469 0.87503 0.88683 0.91897 0.92098 0.91618 0.89305 0.90479 0.93621 0.90763 0.90723 0.91752 0.92353 0.92172 0.92287 0.91789 0.87907 0.83231 0.83539 0.91831 0.90295 0.76662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 12.21 29.01 0.35 -1.65 16 2 C -0.17 -1.94 4.19 -101.07 -0.42 -2.37 16 3 C -0.12 -1.16 8.67 36.00 0.31 -0.85 16 4 C 0.08 1.02 5.18 -4.97 -0.03 0.99 16 5 N -0.52 -6.41 4.66 -237.51 -1.11 -7.52 16 6 C 0.05 0.70 4.57 -3.82 -0.02 0.68 16 7 C -0.09 -1.49 5.00 -26.73 -0.13 -1.62 16 8 C -0.11 -2.23 5.67 37.16 0.21 -2.02 16 9 S -0.13 -3.45 21.44 -107.50 -2.30 -5.75 16 10 C -0.52 -14.84 9.50 30.94 0.29 -14.55 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 13 N -0.87 -26.10 13.22 55.49 0.73 -25.37 16 14 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 C 0.12 1.31 5.30 -4.97 -0.03 1.28 16 19 C 0.01 0.17 6.08 -35.62 -0.22 -0.05 16 20 C -0.20 -2.23 10.81 -39.70 -0.43 -2.66 16 21 C -0.18 -1.92 10.81 -39.70 -0.43 -2.35 16 22 C -0.03 -0.32 6.95 -35.62 -0.25 -0.57 16 23 C 0.16 1.14 7.57 36.01 0.27 1.41 16 24 O -0.57 -4.32 13.64 -35.23 -0.48 -4.80 16 25 O -0.17 -2.04 9.37 5.71 0.05 -1.99 16 26 H 0.11 1.40 6.73 -52.49 -0.35 1.04 16 27 H 0.09 1.01 8.05 -52.48 -0.42 0.59 16 28 H 0.06 0.60 6.79 -51.93 -0.35 0.25 16 29 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 30 H 0.06 0.67 7.39 -51.93 -0.38 0.29 16 31 H 0.09 1.15 6.52 -51.93 -0.34 0.81 16 32 H 0.08 0.94 6.73 -51.93 -0.35 0.60 16 33 H 0.05 0.60 5.80 -51.93 -0.30 0.30 16 34 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 36 H 0.06 1.05 5.62 -51.93 -0.29 0.76 16 37 H 0.06 1.15 8.14 -51.92 -0.42 0.73 16 38 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 39 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.06 0.67 4.51 -51.93 -0.23 0.44 16 41 H 0.10 0.99 7.82 -51.93 -0.41 0.59 16 42 H 0.15 1.50 8.06 -52.49 -0.42 1.07 16 43 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.39 0.82 9.12 45.56 0.42 1.24 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -33.70 385.18 -9.27 -42.97 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.35 Total: 2.45 kcal Atomic # 6 Polarization: -21.80 SS G_CDS: -0.60 Total: -22.40 kcal Atomic # 7 Polarization: -32.52 SS G_CDS: -0.37 Total: -32.89 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.43 Total: -6.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.70 -9.27 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352815602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.794 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds