Wall clock time and date at job start Tue Mar 31 2020 15:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50692 * 120.00006 * 2 1 4 4 C 1.50705 * 119.99725 * 179.97438 * 2 1 3 5 5 N 1.46897 * 109.46537 * 94.46689 * 4 2 1 6 6 C 1.46901 * 111.00515 * 301.24369 * 5 4 2 7 7 C 1.53000 * 109.46767 * 293.10074 * 6 5 4 8 8 C 1.53007 * 109.46813 * 185.18486 * 7 6 5 9 9 S 1.80999 * 109.46861 * 179.97438 * 8 7 6 10 10 C 1.76200 * 99.99970 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99861 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00366 * 180.02562 * 10 9 8 13 13 N 1.31627 * 119.99886 * 359.97438 * 12 10 9 14 14 Si 1.86794 * 120.00321 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47383 * 59.99711 * 14 12 10 16 16 H 1.48500 * 109.47543 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47042 * 299.99809 * 14 12 10 18 18 C 1.46904 * 111.00347 * 65.19795 * 5 4 2 19 19 C 1.50707 * 109.46640 * 71.01014 * 18 5 4 20 20 C 1.34506 * 125.79313 * 90.00633 * 19 18 5 21 21 C 1.41384 * 106.84452 * 180.02562 * 20 19 18 22 22 C 1.34520 * 106.83701 * 0.22391 * 21 20 19 23 23 C 1.50701 * 125.78677 * 179.76959 * 22 21 20 24 24 O 1.42900 * 109.46840 * 90.00013 * 23 22 21 25 25 O 1.34299 * 108.41984 * 359.63568 * 22 21 20 26 26 H 1.08002 * 120.00216 * 179.97438 * 1 2 3 27 27 H 1.08007 * 119.99778 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47120 * 275.58603 * 3 2 1 29 29 H 1.08997 * 109.47629 * 35.58544 * 3 2 1 30 30 H 1.09001 * 109.47352 * 155.58832 * 3 2 1 31 31 H 1.09001 * 109.47168 * 334.46923 * 4 2 1 32 32 H 1.08995 * 109.46942 * 214.46397 * 4 2 1 33 33 H 1.08995 * 109.46883 * 53.09606 * 6 5 4 34 34 H 1.08997 * 109.47655 * 173.10052 * 6 5 4 35 35 H 1.09002 * 109.47333 * 305.18494 * 7 6 5 36 36 H 1.08997 * 109.47302 * 65.19078 * 7 6 5 37 37 H 1.09002 * 109.47177 * 300.00103 * 8 7 6 38 38 H 1.08997 * 109.46704 * 60.00225 * 8 7 6 39 39 H 0.97003 * 120.00400 * 180.02562 * 13 12 10 40 40 H 1.08996 * 109.46812 * 311.01312 * 18 5 4 41 41 H 1.09000 * 109.47383 * 191.00485 * 18 5 4 42 42 H 1.07998 * 126.57740 * 359.97438 * 20 19 18 43 43 H 1.08000 * 126.57862 * 179.97438 * 21 20 19 44 44 H 1.08998 * 109.46856 * 210.00054 * 23 22 21 45 45 H 1.09003 * 109.46988 * 330.00569 * 23 22 21 46 46 H 0.96694 * 114.00151 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.0635 -1.3052 0.0006 5 7 2.4016 -1.6758 -1.3801 6 6 1.1912 -1.8032 -2.2026 7 6 0.3674 -2.9972 -1.7161 8 6 -0.8251 -3.2089 -2.6511 9 16 -1.7992 -4.6219 -2.0761 10 6 -3.0686 -4.6360 -3.2980 11 1 -3.0650 -3.9004 -4.0889 12 6 -4.0730 -5.5923 -3.2443 13 7 -4.0771 -6.4891 -2.2808 14 14 -5.4183 -5.6077 -4.5401 15 1 -4.8113 -5.8000 -5.8817 16 1 -6.3630 -6.7187 -4.2598 17 1 -6.1507 -4.3162 -4.5087 18 6 3.3395 -0.7110 -1.9696 19 6 4.6936 -0.8702 -1.3275 20 6 5.6752 -1.6852 -1.7533 21 6 6.7609 -1.5189 -0.8629 22 6 6.3758 -0.6157 0.0567 23 6 7.2084 -0.1259 1.2133 24 8 7.9583 1.0212 0.8083 25 8 5.1246 -0.2226 -0.2326 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 2.1585 1.6697 -1.0228 29 1 1.5214 2.0376 0.5980 30 1 3.0556 1.1518 0.4247 31 1 1.4420 -2.0833 0.4439 32 1 2.9789 -1.1959 0.5821 33 1 0.5971 -0.8933 -2.1180 34 1 1.4739 -1.9570 -3.2439 35 1 0.9904 -3.8916 -1.7136 36 1 0.0070 -2.8026 -0.7061 37 1 -1.4481 -2.3145 -2.6536 38 1 -0.4646 -3.4035 -3.6612 39 1 -4.7789 -7.1577 -2.2434 40 1 2.9736 0.3016 -1.7997 41 1 3.4220 -0.8926 -3.0412 42 1 5.6405 -2.3414 -2.6103 43 1 7.7146 -2.0234 -0.9096 44 1 6.5550 0.1418 2.0436 45 1 7.8921 -0.9142 1.5284 46 1 8.5181 1.3910 1.5045 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352815602.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:26 Heat of formation + Delta-G solvation = -42.833240 kcal Electronic energy + Delta-G solvation = -24976.695080 eV Core-core repulsion = 21379.758739 eV Total energy + Delta-G solvation = -3596.936341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.56131 -39.97536 -37.77747 -35.47856 -34.63002 -34.47129 -33.85360 -31.81580 -29.25632 -28.14433 -27.88438 -27.59577 -25.63669 -23.66784 -22.63822 -22.06137 -21.07727 -19.60167 -19.24627 -18.59048 -17.74185 -17.37013 -17.04940 -16.88396 -16.57246 -15.97284 -15.89687 -15.72830 -15.54264 -15.25264 -14.80932 -14.65786 -14.04305 -13.94949 -13.84495 -13.74455 -13.50223 -13.26652 -13.07253 -12.94551 -12.88098 -12.71422 -12.61459 -12.52830 -12.38434 -12.29994 -12.20646 -11.55365 -11.39376 -11.12047 -11.09826 -10.82225 -10.29949 -10.06747 -9.47891 -9.26229 -8.64738 -8.35914 -6.11853 0.62852 1.20680 1.31760 1.41140 1.47890 1.59145 1.77224 1.90606 2.29816 2.98067 3.03047 3.34921 3.46651 3.75834 3.84595 3.89080 4.00841 4.06967 4.12364 4.13594 4.26044 4.29382 4.36642 4.44836 4.48037 4.52609 4.59705 4.68489 4.71367 4.72774 4.83748 4.86879 4.93101 5.00305 5.05283 5.10759 5.15658 5.18107 5.34344 5.40642 5.58593 5.64908 5.79740 5.93398 6.05011 6.19129 6.23258 6.85418 7.06084 8.73134 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.025190 B = 0.002194 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.277732 B =12760.036980 C =13266.605129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.167 4.167 3 C -0.113 4.113 4 C 0.086 3.914 5 N -0.527 5.527 6 C 0.065 3.935 7 C -0.079 4.079 8 C -0.085 4.085 9 S -0.198 6.198 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.014 3.986 13 N -0.908 5.908 14 Si 0.993 3.007 15 H -0.264 1.264 16 H -0.276 1.276 17 H -0.264 1.264 18 C 0.124 3.876 19 C -0.001 4.001 20 C -0.208 4.208 21 C -0.195 4.195 22 C -0.042 4.042 23 C 0.160 3.840 24 O -0.590 6.590 25 O -0.181 6.181 26 H 0.089 0.911 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.271 0.729 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.158 0.842 43 H 0.165 0.835 44 H 0.074 0.926 45 H 0.105 0.895 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.652 16.878 5.955 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.168 4.168 3 C -0.169 4.169 4 C -0.041 4.041 5 N -0.249 5.249 6 C -0.064 4.064 7 C -0.118 4.118 8 C -0.234 4.234 9 S 0.030 5.970 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.191 4.191 13 N -0.544 5.544 14 Si 0.815 3.185 15 H -0.189 1.189 16 H -0.201 1.201 17 H -0.189 1.189 18 C -0.003 4.003 19 C -0.052 4.052 20 C -0.228 4.228 21 C -0.214 4.214 22 C -0.092 4.092 23 C 0.083 3.917 24 O -0.401 6.401 25 O -0.079 6.079 26 H 0.107 0.893 27 H 0.126 0.874 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.134 0.866 42 H 0.176 0.824 43 H 0.183 0.817 44 H 0.092 0.908 45 H 0.123 0.877 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 22.503 15.660 6.549 28.187 hybrid contribution -1.210 1.025 -1.192 1.984 sum 21.293 16.685 5.357 27.577 Atomic orbital electron populations 1.23909 0.95471 1.02260 1.00041 1.22416 0.95865 0.97143 1.01398 1.20939 0.99956 0.93959 1.02062 1.21332 0.99268 0.93177 0.90318 1.62318 1.13531 1.46787 1.02282 1.22108 0.89745 0.97287 0.97288 1.21123 0.93953 0.98724 0.97975 1.23123 0.99002 0.99517 1.01757 1.84668 1.30328 1.39958 1.42021 1.23005 1.12325 1.19269 1.13884 0.90888 1.26072 1.00284 0.94037 0.98708 1.70153 1.34397 1.16748 1.33105 0.85078 0.77106 0.78328 0.77980 1.18910 1.20051 1.18920 1.20782 0.84901 0.96345 0.98304 1.22426 0.97427 0.97032 0.88308 1.21846 0.93818 1.03217 1.03885 1.21921 1.01308 1.02205 0.95948 1.22628 0.84387 1.00510 1.01668 1.20439 0.92247 0.89333 0.89716 1.86496 1.62839 1.46261 1.44488 1.83936 1.28556 1.55710 1.39648 0.89258 0.87414 0.91194 0.91043 0.91958 0.90700 0.90625 0.93136 0.89645 0.91784 0.92133 0.91966 0.91825 0.92021 0.91226 0.86565 0.82432 0.81740 0.90782 0.87690 0.74071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.06 12.21 67.78 0.83 -3.23 16 2 C -0.17 -3.58 4.19 -16.49 -0.07 -3.65 16 3 C -0.11 -2.03 8.67 71.23 0.62 -1.41 16 4 C 0.09 2.05 5.18 85.56 0.44 2.50 16 5 N -0.53 -12.46 4.66 -905.36 -4.22 -16.68 16 6 C 0.06 1.63 4.57 86.30 0.39 2.02 16 7 C -0.08 -2.55 5.00 30.60 0.15 -2.40 16 8 C -0.08 -3.37 5.67 71.98 0.41 -2.97 16 9 S -0.20 -10.64 21.44 -56.49 -1.21 -11.85 16 10 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 11 H 0.07 4.06 7.80 -2.91 -0.02 4.04 16 12 C 0.01 0.79 5.49 84.86 0.47 1.26 16 13 N -0.91 -55.26 13.22 21.65 0.29 -54.97 16 14 Si 0.99 44.14 29.55 68.60 2.03 46.17 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 18 C 0.12 2.51 5.30 85.56 0.45 2.96 16 19 C 0.00 -0.03 6.08 24.83 0.15 0.12 16 20 C -0.21 -4.52 10.81 22.19 0.24 -4.28 16 21 C -0.19 -3.89 10.81 22.19 0.24 -3.65 16 22 C -0.04 -0.85 6.95 24.83 0.17 -0.68 16 23 C 0.16 1.97 7.57 71.24 0.54 2.51 16 24 O -0.59 -7.90 13.64 -148.98 -2.03 -9.93 16 25 O -0.18 -4.22 9.37 -2.49 -0.02 -4.24 16 26 H 0.09 2.35 6.73 -2.91 -0.02 2.33 16 27 H 0.11 2.15 8.05 -2.91 -0.02 2.13 16 28 H 0.07 1.18 6.79 -2.38 -0.02 1.16 16 29 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 30 H 0.06 1.18 7.39 -2.39 -0.02 1.16 16 31 H 0.07 1.97 6.52 -2.39 -0.02 1.95 16 32 H 0.08 1.83 6.73 -2.39 -0.02 1.81 16 33 H 0.05 1.25 5.80 -2.39 -0.01 1.23 16 34 H 0.09 1.99 7.85 -2.39 -0.02 1.97 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.01 5.62 -2.39 -0.01 2.00 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.06 2.49 8.14 -2.40 -0.02 2.47 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.07 1.34 4.51 -2.39 -0.01 1.33 16 41 H 0.12 2.02 7.82 -2.39 -0.02 2.00 16 42 H 0.16 3.01 8.06 -2.91 -0.02 2.98 16 43 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.41 0.91 9.12 -74.06 -0.68 0.23 16 Total: -1.00 -72.93 385.18 0.82 -72.11 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.30 Total: 20.82 kcal Atomic # 6 Polarization: -47.11 SS G_CDS: 5.68 Total: -41.42 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -3.93 Total: -71.65 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: -2.06 Total: -14.17 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -10.64 SS G_CDS: -1.21 Total: -11.85 kcal Total: -72.93 0.82 -72.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352815602.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.280 kcal (2) G-P(sol) polarization free energy of solvation -72.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds