Wall clock time and date at job start Tue Mar 31 2020 13:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99952 * 2 1 4 4 C 1.38209 * 120.00143 * 180.22923 * 3 2 1 5 5 C 1.38263 * 119.99658 * 359.81312 * 4 3 2 6 6 C 1.38217 * 119.99941 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99888 * 179.78901 * 2 1 3 8 8 S 1.76197 * 120.00027 * 359.97438 * 7 2 1 9 9 O 1.42095 * 106.40326 * 80.98528 * 8 7 2 10 10 O 1.42105 * 106.40137 * 308.06578 * 8 7 2 11 11 N 1.65599 * 107.21800 * 194.52687 * 8 7 2 12 12 C 1.46503 * 120.00146 * 95.76318 * 11 8 7 13 13 C 1.50695 * 109.47245 * 265.24258 * 12 11 8 14 14 H 1.08002 * 120.00362 * 4.73138 * 13 12 11 15 15 C 1.37877 * 120.00173 * 184.72731 * 13 12 11 16 16 N 1.31518 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47303 * 90.00256 * 17 15 13 19 19 H 1.48499 * 109.46934 * 209.99732 * 17 15 13 20 20 H 1.48494 * 109.47281 * 330.00100 * 17 15 13 21 21 C 1.46504 * 119.99776 * 275.76748 * 11 8 7 22 22 C 1.53001 * 109.46939 * 264.99876 * 21 11 8 23 23 C 1.52994 * 109.46928 * 180.02562 * 22 21 11 24 24 C 1.52995 * 109.47357 * 64.99812 * 23 22 21 25 25 C 1.53009 * 109.46978 * 185.00108 * 23 22 21 26 26 H 1.09001 * 109.47062 * 273.40394 * 1 2 3 27 27 H 1.09002 * 109.46972 * 33.40455 * 1 2 3 28 28 H 1.09000 * 109.46806 * 153.40632 * 1 2 3 29 29 H 1.08001 * 120.00139 * 0.06837 * 3 2 1 30 30 H 1.07992 * 120.00476 * 179.83689 * 4 3 2 31 31 H 1.08004 * 119.99982 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.99504 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46563 * 25.24615 * 12 11 8 34 34 H 1.09000 * 109.46954 * 145.23696 * 12 11 8 35 35 H 0.96999 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.46802 * 24.99877 * 21 11 8 37 37 H 1.08995 * 109.46792 * 145.00162 * 21 11 8 38 38 H 1.09004 * 109.46660 * 300.00150 * 22 21 11 39 39 H 1.08997 * 109.47056 * 59.99729 * 22 21 11 40 40 H 1.08999 * 109.47020 * 304.99713 * 23 22 21 41 41 H 1.09004 * 109.46912 * 60.00408 * 24 23 22 42 42 H 1.09004 * 109.47285 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47789 * 300.00050 * 24 23 22 44 44 H 1.08999 * 109.47264 * 59.99229 * 25 23 22 45 45 H 1.09001 * 109.46960 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46922 * 299.99664 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1970 0.0044 8 16 1.3171 -2.7229 0.0107 9 8 0.9310 -2.9689 -1.3345 10 8 0.3890 -2.6459 1.0841 11 7 2.3982 -3.9115 0.4117 12 6 2.5103 -4.3613 1.8014 13 6 3.6239 -3.6101 2.4844 14 1 4.1409 -2.8185 1.9624 15 6 3.9829 -3.9333 3.7758 16 7 3.3536 -4.8976 4.4114 17 14 5.3628 -3.0017 4.6226 18 1 4.8015 -1.8270 5.3369 19 1 6.0392 -3.8961 5.5961 20 1 6.3446 -2.5413 3.6081 21 6 3.2427 -4.5131 -0.6233 22 6 2.5832 -5.7938 -1.1388 23 6 3.4654 -6.4224 -2.2193 24 6 4.7902 -6.8706 -1.5990 25 6 2.7492 -7.6326 -2.8222 26 1 -0.3633 0.0610 1.0259 27 1 -0.3633 0.8579 -0.5658 28 1 -0.3633 -0.9190 -0.4601 29 1 1.6584 2.1327 0.0011 30 1 4.1204 2.1326 -0.0075 31 1 5.3517 0.0000 -0.0098 32 1 4.1206 -2.1322 -0.0015 33 1 1.5714 -4.1714 2.3216 34 1 2.7268 -5.4294 1.8212 35 1 3.6059 -5.1247 5.3201 36 1 3.3641 -3.8098 -1.4472 37 1 4.2193 -4.7514 -0.2021 38 1 2.4618 -6.4969 -0.3148 39 1 1.6065 -5.5554 -1.5599 40 1 3.6603 -5.6887 -3.0015 41 1 4.5953 -7.6044 -0.8168 42 1 5.4186 -7.3189 -2.3687 43 1 5.3005 -6.0086 -1.1695 44 1 1.8053 -7.3132 -3.2640 45 1 3.3779 -8.0807 -3.5917 46 1 2.5543 -8.3663 -2.0400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353357936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:13 Heat of formation + Delta-G solvation = -69.627131 kcal Electronic energy + Delta-G solvation = -27050.564991 eV Core-core repulsion = 23452.466780 eV Total energy + Delta-G solvation = -3598.098211 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.09935 -37.29152 -36.51017 -35.30045 -34.92926 -32.76810 -32.47850 -31.01789 -29.00994 -27.00662 -26.92721 -26.42121 -23.33677 -22.98932 -22.09365 -21.37608 -19.69628 -18.42037 -17.24731 -16.89468 -16.30863 -15.69405 -15.57546 -15.15341 -14.81707 -14.54533 -14.22158 -14.08124 -13.70490 -13.67822 -13.12161 -12.98824 -12.76156 -12.56450 -12.40602 -12.08801 -12.02000 -11.95193 -11.79827 -11.71320 -11.44821 -11.28719 -11.18883 -11.13298 -11.09442 -10.81540 -10.76111 -10.49402 -10.34578 -10.28756 -10.19160 -9.91487 -9.70565 -9.08143 -8.59709 -8.49620 -8.08405 -6.11699 -4.17817 1.04858 1.13959 1.49268 3.24744 3.31830 3.31953 3.52548 3.72189 4.23517 4.36270 4.78107 4.92284 5.00836 5.06851 5.11569 5.17852 5.22613 5.25247 5.30471 5.40615 5.48916 5.62033 5.66841 5.77243 5.81422 5.85287 5.91351 5.93330 5.98709 6.02527 6.05862 6.20775 6.23527 6.30365 6.33073 6.41994 6.45542 6.48423 6.52073 6.72081 6.75435 7.05409 7.32375 7.41688 7.60939 7.84461 8.12954 8.85037 9.48067 10.96503 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008065 B = 0.006835 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.967909 B = 4095.281993 C = 6027.678542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.010 3.990 3 C -0.146 4.146 4 C -0.073 4.073 5 C -0.148 4.148 6 C -0.013 4.013 7 C -0.660 4.660 8 S 2.689 3.311 9 O -0.976 6.976 10 O -0.954 6.954 11 N -0.983 5.983 12 C 0.244 3.756 13 C -0.542 4.542 14 H 0.063 0.937 15 C 0.067 3.933 16 N -0.888 5.888 17 Si 0.890 3.110 18 H -0.279 1.279 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.127 3.873 22 C -0.136 4.136 23 C -0.094 4.094 24 C -0.150 4.150 25 C -0.146 4.146 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.264 0.736 36 H 0.063 0.937 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.047 0.953 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 4.844 -11.903 12.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.008 3.992 3 C -0.164 4.164 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.032 4.032 7 C -0.745 4.745 8 S 2.778 3.222 9 O -0.967 6.967 10 O -0.944 6.944 11 N -0.822 5.822 12 C 0.123 3.877 13 C -0.581 4.581 14 H 0.081 0.919 15 C -0.136 4.136 16 N -0.527 5.527 17 Si 0.718 3.282 18 H -0.205 1.205 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.001 3.999 22 C -0.175 4.175 23 C -0.113 4.113 24 C -0.207 4.207 25 C -0.203 4.203 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.074 4.643 -11.882 12.757 hybrid contribution 1.583 1.030 0.844 2.069 sum 1.657 5.673 -11.038 12.521 Atomic orbital electron populations 1.21168 0.90851 1.03138 1.04423 1.19422 0.95517 0.92023 0.92217 1.21023 0.94471 0.97271 1.03674 1.21313 0.94320 0.98103 0.95387 1.21232 1.00165 0.92607 1.02623 1.21028 0.92000 0.99498 0.90642 1.31069 1.06775 1.20413 1.16207 1.02113 0.73814 0.73032 0.73256 1.93544 1.81203 1.84886 1.37026 1.93572 1.59128 1.86519 1.55214 1.57369 1.56691 1.50643 1.17497 1.19280 0.98335 0.96724 0.73377 1.21578 1.18583 1.19113 0.98871 0.91878 1.24902 0.96572 0.94994 0.97147 1.69924 1.41027 1.29244 1.12474 0.86624 0.82149 0.79868 0.79584 1.20537 1.21084 1.19819 1.21261 0.95354 0.94266 0.89068 1.22109 0.99339 0.97701 0.98356 1.21054 0.95450 0.97243 0.97576 1.21913 0.96645 1.01710 1.00464 1.21830 1.00147 0.97924 1.00407 0.88571 0.90040 0.92098 0.85518 0.85742 0.85485 0.84117 0.93072 0.93548 0.92597 0.91888 0.89489 0.90994 0.91418 0.91330 0.92474 0.93345 0.92078 0.92780 0.93119 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 8.93 36.01 0.32 -1.76 16 2 C 0.01 0.16 5.88 -104.62 -0.61 -0.45 16 3 C -0.15 -2.06 9.72 -39.59 -0.38 -2.44 16 4 C -0.07 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.15 -2.20 10.05 -39.58 -0.40 -2.60 16 6 C -0.01 -0.23 8.70 -39.59 -0.34 -0.57 16 7 C -0.66 -12.43 5.83 -39.58 -0.23 -12.66 16 8 S 2.69 55.30 4.19 -107.50 -0.45 54.85 16 9 O -0.98 -20.26 16.84 -57.17 -0.96 -21.22 16 10 O -0.95 -22.23 15.16 -57.17 -0.87 -23.09 16 11 N -0.98 -20.02 2.01 -115.66 -0.23 -20.25 16 12 C 0.24 5.95 5.41 -5.19 -0.03 5.92 16 13 C -0.54 -14.02 9.38 -34.44 -0.32 -14.34 16 14 H 0.06 1.55 5.97 -52.49 -0.31 1.23 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 17 Si 0.89 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 21 C 0.13 2.15 4.08 -4.04 -0.02 2.13 16 22 C -0.14 -2.12 5.01 -26.73 -0.13 -2.25 16 23 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 24 C -0.15 -1.82 8.95 37.15 0.33 -1.49 16 25 C -0.15 -1.66 9.19 37.16 0.34 -1.32 16 26 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 27 H 0.08 0.91 8.11 -51.93 -0.42 0.49 16 28 H 0.06 0.98 6.19 -51.93 -0.32 0.66 16 29 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 30 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 32 H 0.14 2.38 5.51 -52.49 -0.29 2.09 16 33 H 0.05 1.38 6.88 -51.93 -0.36 1.02 16 34 H 0.05 1.16 8.11 -51.93 -0.42 0.74 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.06 0.96 7.70 -51.93 -0.40 0.56 16 37 H 0.09 1.44 6.53 -51.93 -0.34 1.10 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.11 7.98 -51.93 -0.41 0.69 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.76 6.56 -51.93 -0.34 0.41 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 379.06 15.07 5.71 5.71 Total: -1.00 -31.42 379.06 -10.73 -42.14 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.40 Total: 3.55 kcal Atomic # 6 Polarization: -30.74 SS G_CDS: -2.24 Total: -32.98 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.50 Total: -44.67 kcal Atomic # 8 Polarization: -42.49 SS G_CDS: -1.83 Total: -44.32 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 55.30 SS G_CDS: -0.45 Total: 54.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.42 -10.73 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353357936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.485 kcal (2) G-P(sol) polarization free energy of solvation -31.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds