Wall clock time and date at job start Tue Mar 31 2020 13:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 119.99952 * 2 1 4 4 C 1.38209 * 120.00143 * 180.22923 * 3 2 1 5 5 C 1.38263 * 119.99658 * 359.81312 * 4 3 2 6 6 C 1.38217 * 119.99941 * 359.97438 * 5 4 3 7 7 C 1.38219 * 119.99888 * 179.78901 * 2 1 3 8 8 S 1.76197 * 120.00027 * 359.97438 * 7 2 1 9 9 O 1.42095 * 106.40326 * 80.98528 * 8 7 2 10 10 O 1.42105 * 106.40137 * 308.06578 * 8 7 2 11 11 N 1.65599 * 107.21800 * 194.52687 * 8 7 2 12 12 C 1.46503 * 120.00146 * 95.76318 * 11 8 7 13 13 C 1.50695 * 109.47245 * 265.24258 * 12 11 8 14 14 H 1.08002 * 120.00362 * 4.73138 * 13 12 11 15 15 C 1.37877 * 120.00173 * 184.72731 * 13 12 11 16 16 N 1.31518 * 119.99801 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00142 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47303 * 90.00256 * 17 15 13 19 19 H 1.48499 * 109.46934 * 209.99732 * 17 15 13 20 20 H 1.48494 * 109.47281 * 330.00100 * 17 15 13 21 21 C 1.46504 * 119.99776 * 275.76748 * 11 8 7 22 22 C 1.53001 * 109.46939 * 264.99876 * 21 11 8 23 23 C 1.52994 * 109.46928 * 180.02562 * 22 21 11 24 24 C 1.52995 * 109.47357 * 64.99812 * 23 22 21 25 25 C 1.53009 * 109.46978 * 185.00108 * 23 22 21 26 26 H 1.09001 * 109.47062 * 273.40394 * 1 2 3 27 27 H 1.09002 * 109.46972 * 33.40455 * 1 2 3 28 28 H 1.09000 * 109.46806 * 153.40632 * 1 2 3 29 29 H 1.08001 * 120.00139 * 0.06837 * 3 2 1 30 30 H 1.07992 * 120.00476 * 179.83689 * 4 3 2 31 31 H 1.08004 * 119.99982 * 179.97438 * 5 4 3 32 32 H 1.07998 * 119.99504 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46563 * 25.24615 * 12 11 8 34 34 H 1.09000 * 109.46954 * 145.23696 * 12 11 8 35 35 H 0.96999 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.46802 * 24.99877 * 21 11 8 37 37 H 1.08995 * 109.46792 * 145.00162 * 21 11 8 38 38 H 1.09004 * 109.46660 * 300.00150 * 22 21 11 39 39 H 1.08997 * 109.47056 * 59.99729 * 22 21 11 40 40 H 1.08999 * 109.47020 * 304.99713 * 23 22 21 41 41 H 1.09004 * 109.46912 * 60.00408 * 24 23 22 42 42 H 1.09004 * 109.47285 * 179.97438 * 24 23 22 43 43 H 1.08998 * 109.47789 * 300.00050 * 24 23 22 44 44 H 1.08999 * 109.47264 * 59.99229 * 25 23 22 45 45 H 1.09001 * 109.46960 * 180.02562 * 25 23 22 46 46 H 1.08999 * 109.46922 * 299.99664 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1970 0.0044 8 16 1.3171 -2.7229 0.0107 9 8 0.9310 -2.9689 -1.3345 10 8 0.3890 -2.6459 1.0841 11 7 2.3982 -3.9115 0.4117 12 6 2.5103 -4.3613 1.8014 13 6 3.6239 -3.6101 2.4844 14 1 4.1409 -2.8185 1.9624 15 6 3.9829 -3.9333 3.7758 16 7 3.3536 -4.8976 4.4114 17 14 5.3628 -3.0017 4.6226 18 1 4.8015 -1.8270 5.3369 19 1 6.0392 -3.8961 5.5961 20 1 6.3446 -2.5413 3.6081 21 6 3.2427 -4.5131 -0.6233 22 6 2.5832 -5.7938 -1.1388 23 6 3.4654 -6.4224 -2.2193 24 6 4.7902 -6.8706 -1.5990 25 6 2.7492 -7.6326 -2.8222 26 1 -0.3633 0.0610 1.0259 27 1 -0.3633 0.8579 -0.5658 28 1 -0.3633 -0.9190 -0.4601 29 1 1.6584 2.1327 0.0011 30 1 4.1204 2.1326 -0.0075 31 1 5.3517 0.0000 -0.0098 32 1 4.1206 -2.1322 -0.0015 33 1 1.5714 -4.1714 2.3216 34 1 2.7268 -5.4294 1.8212 35 1 3.6059 -5.1247 5.3201 36 1 3.3641 -3.8098 -1.4472 37 1 4.2193 -4.7514 -0.2021 38 1 2.4618 -6.4969 -0.3148 39 1 1.6065 -5.5554 -1.5599 40 1 3.6603 -5.6887 -3.0015 41 1 4.5953 -7.6044 -0.8168 42 1 5.4186 -7.3189 -2.3687 43 1 5.3005 -6.0086 -1.1695 44 1 1.8053 -7.3132 -3.2640 45 1 3.3779 -8.0807 -3.5917 46 1 2.5543 -8.3663 -2.0400 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353357936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:12 Heat of formation + Delta-G solvation = -87.560027 kcal Electronic energy + Delta-G solvation = -27051.342620 eV Core-core repulsion = 23452.466780 eV Total energy + Delta-G solvation = -3598.875840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26714 -38.67198 -38.19171 -36.98199 -36.38346 -34.48795 -33.87597 -32.20814 -30.54908 -28.37759 -27.99798 -27.88900 -25.03883 -24.21136 -23.60949 -22.65037 -20.81958 -19.94885 -18.75048 -18.60502 -18.12448 -17.34991 -16.75554 -16.48103 -16.31112 -15.99545 -15.53130 -15.43667 -14.97368 -14.89018 -14.46764 -14.37036 -14.18964 -14.07322 -13.59505 -13.57234 -13.20692 -13.20465 -13.19683 -13.15755 -12.97957 -12.93105 -12.90306 -12.61982 -12.43013 -12.28867 -12.13310 -11.99812 -11.87723 -11.62215 -11.47671 -11.40807 -11.29440 -10.57700 -10.29677 -9.80716 -9.74598 -8.16849 -6.29878 -0.51574 -0.11250 0.32535 1.40956 1.42542 1.51664 1.94112 2.41793 2.54383 2.67737 3.15287 3.58816 3.65354 3.76553 3.86421 3.96581 4.00258 4.09705 4.18664 4.21827 4.36860 4.48976 4.54504 4.60032 4.61640 4.67243 4.72172 4.85388 4.88241 4.88946 5.03690 5.06673 5.11658 5.16056 5.19400 5.19915 5.27751 5.32671 5.38078 5.39133 5.47055 5.54466 5.61476 5.74926 5.89741 5.93674 6.09324 6.80955 7.39663 8.91641 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.008065 B = 0.006835 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.967909 B = 4095.281993 C = 6027.678542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.014 4.014 3 C -0.142 4.142 4 C -0.062 4.062 5 C -0.152 4.152 6 C -0.036 4.036 7 C -0.685 4.685 8 S 2.692 3.308 9 O -0.988 6.988 10 O -0.994 6.994 11 N -0.985 5.985 12 C 0.261 3.739 13 C -0.546 4.546 14 H 0.076 0.924 15 C 0.013 3.987 16 N -0.927 5.927 17 Si 0.953 3.047 18 H -0.281 1.281 19 H -0.283 1.283 20 H -0.254 1.254 21 C 0.121 3.879 22 C -0.135 4.135 23 C -0.091 4.091 24 C -0.148 4.148 25 C -0.144 4.144 26 H 0.092 0.908 27 H 0.122 0.878 28 H 0.038 0.962 29 H 0.166 0.834 30 H 0.170 0.830 31 H 0.156 0.844 32 H 0.136 0.864 33 H 0.015 0.985 34 H 0.031 0.969 35 H 0.265 0.735 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.080 0.920 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.071 0.929 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.290 7.580 -13.200 15.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.160 4.160 4 C -0.080 4.080 5 C -0.171 4.171 6 C -0.055 4.055 7 C -0.774 4.774 8 S 2.786 3.214 9 O -0.978 6.978 10 O -0.985 6.985 11 N -0.824 5.824 12 C 0.138 3.862 13 C -0.585 4.585 14 H 0.094 0.906 15 C -0.187 4.187 16 N -0.567 5.567 17 Si 0.778 3.222 18 H -0.207 1.207 19 H -0.208 1.208 20 H -0.178 1.178 21 C -0.004 4.004 22 C -0.174 4.174 23 C -0.110 4.110 24 C -0.205 4.205 25 C -0.202 4.202 26 H 0.111 0.889 27 H 0.140 0.860 28 H 0.057 0.943 29 H 0.183 0.817 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.154 0.846 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.090 0.910 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.401 7.334 -13.215 15.303 hybrid contribution 0.830 0.271 1.184 1.472 sum 3.231 7.605 -12.030 14.595 Atomic orbital electron populations 1.21286 0.90346 1.03837 1.04731 1.19806 0.96388 0.92520 0.92809 1.21512 0.95216 0.97509 1.01807 1.21887 0.94241 0.99334 0.92538 1.21645 1.01731 0.92108 1.01567 1.21167 0.91540 1.00794 0.92036 1.30639 1.07517 1.19436 1.19764 1.01615 0.73628 0.73693 0.72447 1.93510 1.81695 1.85551 1.37035 1.93511 1.61186 1.87319 1.56445 1.57198 1.57213 1.51498 1.16509 1.18789 0.96350 0.95811 0.75249 1.21934 1.18381 1.19079 0.99081 0.90568 1.25771 0.99049 0.95874 0.97998 1.70061 1.42816 1.30988 1.12844 0.85622 0.79503 0.78325 0.78748 1.20701 1.20847 1.17790 1.21517 0.95074 0.95112 0.88727 1.22099 0.99456 0.97012 0.98839 1.21059 0.95242 0.97938 0.96752 1.21897 0.96481 1.01371 1.00795 1.21822 1.00373 0.97232 1.00755 0.88921 0.86000 0.94299 0.81657 0.81254 0.82668 0.84605 0.96651 0.95096 0.92609 0.89988 0.89063 0.92572 0.92683 0.90184 0.93509 0.91123 0.92531 0.92937 0.91024 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 8.93 71.24 0.64 -3.65 16 2 C -0.01 -0.44 5.88 -19.86 -0.12 -0.56 16 3 C -0.14 -3.46 9.72 22.27 0.22 -3.24 16 4 C -0.06 -1.37 10.05 22.27 0.22 -1.15 16 5 C -0.15 -4.00 10.05 22.27 0.22 -3.78 16 6 C -0.04 -1.23 8.70 22.27 0.19 -1.04 16 7 C -0.68 -25.76 5.83 22.27 0.13 -25.63 16 8 S 2.69 115.88 4.19 -56.49 -0.24 115.65 16 9 O -0.99 -42.64 16.84 -128.00 -2.16 -44.80 16 10 O -0.99 -49.42 15.16 -128.00 -1.94 -51.36 16 11 N -0.99 -42.10 2.01 -519.84 -1.05 -43.14 16 12 C 0.26 13.44 5.41 85.63 0.46 13.90 16 13 C -0.55 -28.79 9.38 25.60 0.24 -28.55 16 14 H 0.08 3.74 5.97 -2.91 -0.02 3.72 16 15 C 0.01 0.68 5.46 84.65 0.46 1.15 16 16 N -0.93 -54.10 13.29 21.45 0.28 -53.81 16 17 Si 0.95 42.25 29.54 68.60 2.03 44.27 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 21 C 0.12 4.20 4.08 86.38 0.35 4.55 16 22 C -0.13 -4.37 5.01 30.59 0.15 -4.22 16 23 C -0.09 -2.26 2.92 -10.79 -0.03 -2.29 16 24 C -0.15 -3.46 8.95 71.98 0.64 -2.82 16 25 C -0.14 -3.17 9.19 71.99 0.66 -2.51 16 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 27 H 0.12 2.45 8.11 -2.39 -0.02 2.43 16 28 H 0.04 1.29 6.19 -2.39 -0.01 1.27 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 31 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.14 4.54 5.51 -2.91 -0.02 4.53 16 33 H 0.02 0.90 6.88 -2.38 -0.02 0.88 16 34 H 0.03 1.66 8.11 -2.39 -0.02 1.64 16 35 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.08 2.52 7.70 -2.39 -0.02 2.50 16 37 H 0.09 3.07 6.53 -2.39 -0.02 3.06 16 38 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 39 H 0.05 1.90 7.98 -2.39 -0.02 1.88 16 40 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.06 1.36 6.56 -2.39 -0.02 1.34 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -70.97 379.06 2.34 -68.63 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.95 Total: 24.40 kcal Atomic # 6 Polarization: -64.28 SS G_CDS: 4.45 Total: -59.83 kcal Atomic # 7 Polarization: -96.19 SS G_CDS: -0.76 Total: -96.95 kcal Atomic # 8 Polarization: -92.07 SS G_CDS: -4.10 Total: -96.16 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 115.88 SS G_CDS: -0.24 Total: 115.65 kcal Total: -70.97 2.34 -68.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353357936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.931 kcal (2) G-P(sol) polarization free energy of solvation -70.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds