Wall clock time and date at job start Tue Mar 31 2020 13:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.91047 * 2 1 4 4 C 1.38196 * 120.16553 * 179.70395 * 3 2 1 5 5 C 1.38731 * 119.98230 * 0.61267 * 4 3 2 6 6 N 1.40122 * 120.08979 * 179.68285 * 5 4 3 7 7 C 1.34772 * 119.99765 * 24.80090 * 6 5 4 8 8 O 1.21292 * 120.00624 * 5.53663 * 7 6 5 9 9 C 1.50706 * 119.99886 * 185.53423 * 7 6 5 10 10 C 1.52996 * 109.47197 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47370 * 304.99820 * 10 9 7 12 12 C 1.50698 * 109.47219 * 65.00444 * 10 9 7 13 13 H 1.08003 * 119.99829 * 25.01821 * 12 10 9 14 14 C 1.37873 * 120.00113 * 205.02287 * 12 10 9 15 15 N 1.31517 * 120.00191 * 5.00844 * 14 12 10 16 16 Si 1.86799 * 120.00207 * 185.01047 * 14 12 10 17 17 H 1.48497 * 109.47376 * 59.99530 * 16 14 12 18 18 H 1.48501 * 109.47392 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46807 * 299.99868 * 16 14 12 20 20 C 1.50706 * 109.46973 * 185.00290 * 10 9 7 21 21 C 1.38231 * 119.99753 * 304.68294 * 20 10 9 22 22 C 1.38235 * 119.99763 * 179.78779 * 21 20 10 23 23 C 1.38233 * 120.00069 * 0.44556 * 22 21 20 24 24 C 1.38242 * 120.00065 * 359.80881 * 23 22 21 25 25 C 1.38233 * 119.99564 * 359.97438 * 24 23 22 26 26 C 1.39295 * 119.81801 * 359.40884 * 5 4 3 27 27 O 1.35976 * 120.08018 * 180.25511 * 26 5 4 28 28 C 1.38245 * 119.91186 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47254 * 269.98167 * 1 2 3 30 30 H 1.09002 * 109.47130 * 29.98225 * 1 2 3 31 31 H 1.09001 * 109.47132 * 149.98356 * 1 2 3 32 32 H 1.08001 * 119.91346 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.00940 * 180.29460 * 4 3 2 34 34 H 0.97004 * 119.99706 * 204.80576 * 6 5 4 35 35 H 1.09002 * 109.46922 * 60.00359 * 9 7 6 36 36 H 1.09001 * 109.47334 * 300.00782 * 9 7 6 37 37 H 0.97000 * 120.00600 * 179.97438 * 15 14 12 38 38 H 1.07994 * 120.00555 * 359.97438 * 21 20 10 39 39 H 1.07998 * 120.00520 * 180.27471 * 22 21 20 40 40 H 1.08003 * 120.00548 * 179.83415 * 23 22 21 41 41 H 1.07995 * 119.99975 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.99525 * 180.02562 * 25 24 23 43 43 H 0.96699 * 114.00241 * 89.99372 * 27 26 5 44 44 H 1.07995 * 119.98944 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1987 0.0000 4 6 3.5784 1.2048 0.0062 5 6 4.2771 0.0063 -0.0005 6 7 5.6783 0.0100 -0.0009 7 6 6.3496 1.0686 0.4941 8 8 5.7452 1.9731 1.0307 9 6 7.8511 1.1288 0.3809 10 6 8.3591 2.4239 1.0175 11 1 7.8545 3.2755 0.5610 12 6 8.0714 2.4032 2.4966 13 1 7.9637 1.4606 3.0126 14 6 7.9457 3.5876 3.1911 15 7 7.9785 4.7340 2.5475 16 14 7.7289 3.5640 5.0463 17 1 8.9015 2.9031 5.6734 18 1 7.6172 4.9567 5.5494 19 1 6.4947 2.8134 5.3908 20 6 9.8451 2.5432 0.7964 21 6 10.6881 1.5260 1.2031 22 6 12.0507 1.6334 0.9964 23 6 12.5711 2.7620 0.3912 24 6 11.7286 3.7815 -0.0109 25 6 10.3656 3.6721 0.1919 26 6 3.5819 -1.2007 -0.0009 27 8 4.2613 -2.3786 -0.0021 28 6 2.1963 -1.1983 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6536 2.1323 0.0004 33 1 4.1144 2.1424 0.0110 34 1 6.1652 -0.7495 -0.3576 35 1 8.1375 1.1036 -0.6705 36 1 8.2890 0.2744 0.8972 37 1 7.8897 5.5673 3.0360 38 1 10.2821 0.6461 1.6797 39 1 12.7090 0.8368 1.3101 40 1 13.6360 2.8472 0.2320 41 1 12.1351 4.6631 -0.4841 42 1 9.7072 4.4685 -0.1226 43 1 4.4585 -2.7199 0.8809 44 1 1.6548 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353520489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:50 Heat of formation + Delta-G solvation = -33.416854 kcal Electronic energy + Delta-G solvation = -26756.652979 eV Core-core repulsion = 23024.681012 eV Total energy + Delta-G solvation = -3731.971967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42700 -38.83965 -38.14576 -36.78370 -34.68241 -33.91669 -31.72571 -31.18708 -30.01339 -29.77796 -28.89546 -26.58467 -25.23498 -23.00380 -22.74574 -21.72202 -21.38041 -20.11354 -19.31055 -18.14689 -17.21726 -16.74484 -16.40727 -15.84810 -15.49247 -15.00877 -14.59901 -14.48381 -14.15676 -14.08012 -13.89545 -13.59643 -13.52749 -13.13787 -12.69920 -12.61935 -12.43146 -12.10411 -11.99584 -11.92337 -11.66441 -11.60021 -11.42854 -10.89205 -10.79862 -10.74342 -10.62277 -10.27420 -10.07141 -9.96460 -9.48623 -9.23546 -8.93984 -8.60155 -8.36897 -8.04969 -7.65393 -7.63238 -5.97393 -3.97245 1.31061 1.46470 2.28208 2.33913 3.24660 3.36352 3.39760 3.42614 3.45191 3.79637 4.25886 4.48097 4.74110 4.90858 4.97802 5.22394 5.29528 5.37030 5.48273 5.54827 5.65551 5.68666 5.71400 5.80466 5.83335 5.88165 6.01002 6.06351 6.08102 6.24790 6.36379 6.40176 6.42611 6.50868 6.65296 6.72433 6.76838 6.90473 7.01644 7.09027 7.30808 7.40757 7.51609 7.65498 7.82678 7.85543 7.92515 8.02748 8.31464 8.80386 9.00665 9.63873 11.12088 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.003512 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.528328 B = 7970.591533 C = 9060.363480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C -0.104 4.104 4 C -0.118 4.118 5 C 0.143 3.857 6 N -0.683 5.683 7 C 0.509 3.491 8 O -0.471 6.471 9 C -0.122 4.122 10 C 0.082 3.918 11 H 0.070 0.930 12 C -0.492 4.492 13 H 0.050 0.950 14 C 0.077 3.923 15 N -0.880 5.880 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.022 4.022 21 C -0.120 4.120 22 C -0.132 4.132 23 C -0.155 4.155 24 C -0.129 4.129 25 C -0.111 4.111 26 C 0.060 3.940 27 O -0.497 6.497 28 C -0.125 4.125 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.408 0.592 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.260 0.740 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.385 0.615 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 -10.481 -6.886 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.123 4.123 4 C -0.138 4.138 5 C 0.046 3.954 6 N -0.329 5.329 7 C 0.298 3.702 8 O -0.341 6.341 9 C -0.162 4.162 10 C 0.063 3.937 11 H 0.088 0.912 12 C -0.530 4.530 13 H 0.068 0.932 14 C -0.127 4.127 15 N -0.517 5.517 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.213 1.213 19 H -0.204 1.204 20 C -0.023 4.023 21 C -0.139 4.139 22 C -0.150 4.150 23 C -0.173 4.173 24 C -0.147 4.147 25 C -0.130 4.130 26 C 0.013 3.987 27 O -0.306 6.306 28 C -0.144 4.144 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.143 0.857 33 H 0.171 0.829 34 H 0.244 0.756 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.129 0.871 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.135 0.865 43 H 0.240 0.760 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -6.388 -9.484 -7.060 13.438 hybrid contribution 0.353 -0.436 1.646 1.739 sum -6.035 -9.920 -5.414 12.812 Atomic orbital electron populations 1.20713 0.91221 1.02444 1.02078 1.19690 0.95951 0.92643 1.02481 1.20994 0.93725 0.97520 1.00019 1.21481 0.94014 0.98399 0.99946 1.18239 0.83934 0.93357 0.99864 1.43935 1.03815 1.22473 1.62714 1.21221 0.91109 0.80985 0.76933 1.90729 1.69189 1.36330 1.37840 1.21822 0.89695 1.03448 1.01248 1.17805 0.86830 0.92230 0.96844 0.91233 1.20639 1.48433 0.92191 0.91727 0.93170 1.24803 0.94361 0.95689 0.97820 1.69886 1.49233 0.97249 1.35293 0.86775 0.78506 0.76999 0.86420 1.20394 1.21341 1.20384 1.20670 0.98623 0.92124 0.90882 1.20924 0.92747 0.99656 1.00531 1.20951 0.95444 0.97776 1.00849 1.20801 0.98424 0.95299 1.02818 1.21007 0.94170 0.98184 1.01325 1.21091 0.94382 0.98103 0.99382 1.18066 0.89890 0.83883 1.06848 1.84813 1.76441 1.35884 1.33458 1.20964 0.92485 0.98148 1.02774 0.91464 0.91629 0.91893 0.85735 0.82869 0.75635 0.90994 0.90077 0.93021 0.87064 0.87688 0.87817 0.87629 0.86533 0.76021 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.97 10.01 36.00 0.36 -0.61 16 2 C -0.11 -1.31 5.88 -104.60 -0.62 -1.93 16 3 C -0.10 -1.45 9.69 -39.58 -0.38 -1.83 16 4 C -0.12 -1.96 8.72 -39.41 -0.34 -2.31 16 5 C 0.14 2.26 6.45 -83.49 -0.54 1.72 16 6 N -0.68 -10.59 5.28 -9.74 -0.05 -10.64 16 7 C 0.51 9.77 7.38 -10.98 -0.08 9.69 16 8 O -0.47 -11.09 12.15 5.55 0.07 -11.03 16 9 C -0.12 -2.25 4.84 -27.88 -0.13 -2.38 16 10 C 0.08 1.89 1.61 -92.92 -0.15 1.74 16 11 H 0.07 1.84 7.09 -51.93 -0.37 1.47 16 12 C -0.49 -12.91 6.62 -34.44 -0.23 -13.14 16 13 H 0.05 1.32 7.81 -52.48 -0.41 0.91 16 14 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 15 N -0.88 -25.17 12.92 55.43 0.72 -24.46 16 16 Si 0.88 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 C -0.02 -0.48 4.77 -104.62 -0.50 -0.98 16 21 C -0.12 -2.36 8.94 -39.58 -0.35 -2.72 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 23 C -0.16 -2.69 10.05 -39.58 -0.40 -3.08 16 24 C -0.13 -2.38 10.05 -39.58 -0.40 -2.78 16 25 C -0.11 -2.35 9.67 -39.58 -0.38 -2.73 16 26 C 0.06 0.82 6.72 -39.07 -0.26 0.56 16 27 O -0.50 -5.74 12.92 -19.67 -0.25 -5.99 16 28 C -0.12 -1.54 9.63 -39.46 -0.38 -1.92 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.15 2.91 5.79 -52.49 -0.30 2.61 16 34 H 0.41 5.15 8.35 -40.82 -0.34 4.81 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.36 7.33 -51.93 -0.38 0.98 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.11 2.05 7.37 -52.49 -0.39 1.67 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.12 2.53 7.95 -52.48 -0.42 2.12 16 43 H 0.38 2.99 9.06 45.56 0.41 3.41 16 44 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -31.97 372.49 -9.34 -41.31 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.13 Total: 11.74 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -5.28 Total: -23.41 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: 0.66 Total: -35.09 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.19 Total: -17.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.97 -9.34 -41.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353520489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.895 kcal (2) G-P(sol) polarization free energy of solvation -31.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds