Wall clock time and date at job start Tue Mar 31 2020 13:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38285 * 119.91047 * 2 1 4 4 C 1.38196 * 120.16553 * 179.70395 * 3 2 1 5 5 C 1.38731 * 119.98230 * 0.61267 * 4 3 2 6 6 N 1.40122 * 120.08979 * 179.68285 * 5 4 3 7 7 C 1.34772 * 119.99765 * 24.80090 * 6 5 4 8 8 O 1.21292 * 120.00624 * 5.53663 * 7 6 5 9 9 C 1.50706 * 119.99886 * 185.53423 * 7 6 5 10 10 C 1.52996 * 109.47197 * 180.02562 * 9 7 6 11 11 H 1.09006 * 109.47370 * 304.99820 * 10 9 7 12 12 C 1.50698 * 109.47219 * 65.00444 * 10 9 7 13 13 H 1.08003 * 119.99829 * 25.01821 * 12 10 9 14 14 C 1.37873 * 120.00113 * 205.02287 * 12 10 9 15 15 N 1.31517 * 120.00191 * 5.00844 * 14 12 10 16 16 Si 1.86799 * 120.00207 * 185.01047 * 14 12 10 17 17 H 1.48497 * 109.47376 * 59.99530 * 16 14 12 18 18 H 1.48501 * 109.47392 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.46807 * 299.99868 * 16 14 12 20 20 C 1.50706 * 109.46973 * 185.00290 * 10 9 7 21 21 C 1.38231 * 119.99753 * 304.68294 * 20 10 9 22 22 C 1.38235 * 119.99763 * 179.78779 * 21 20 10 23 23 C 1.38233 * 120.00069 * 0.44556 * 22 21 20 24 24 C 1.38242 * 120.00065 * 359.80881 * 23 22 21 25 25 C 1.38233 * 119.99564 * 359.97438 * 24 23 22 26 26 C 1.39295 * 119.81801 * 359.40884 * 5 4 3 27 27 O 1.35976 * 120.08018 * 180.25511 * 26 5 4 28 28 C 1.38245 * 119.91186 * 180.02562 * 2 1 3 29 29 H 1.08996 * 109.47254 * 269.98167 * 1 2 3 30 30 H 1.09002 * 109.47130 * 29.98225 * 1 2 3 31 31 H 1.09001 * 109.47132 * 149.98356 * 1 2 3 32 32 H 1.08001 * 119.91346 * 0.02562 * 3 2 1 33 33 H 1.07993 * 120.00940 * 180.29460 * 4 3 2 34 34 H 0.97004 * 119.99706 * 204.80576 * 6 5 4 35 35 H 1.09002 * 109.46922 * 60.00359 * 9 7 6 36 36 H 1.09001 * 109.47334 * 300.00782 * 9 7 6 37 37 H 0.97000 * 120.00600 * 179.97438 * 15 14 12 38 38 H 1.07994 * 120.00555 * 359.97438 * 21 20 10 39 39 H 1.07998 * 120.00520 * 180.27471 * 22 21 20 40 40 H 1.08003 * 120.00548 * 179.83415 * 23 22 21 41 41 H 1.07995 * 119.99975 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.99525 * 180.02562 * 25 24 23 43 43 H 0.96699 * 114.00241 * 89.99372 * 27 26 5 44 44 H 1.07995 * 119.98944 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.1987 0.0000 4 6 3.5784 1.2048 0.0062 5 6 4.2771 0.0063 -0.0005 6 7 5.6783 0.0100 -0.0009 7 6 6.3496 1.0686 0.4941 8 8 5.7452 1.9731 1.0307 9 6 7.8511 1.1288 0.3809 10 6 8.3591 2.4239 1.0175 11 1 7.8545 3.2755 0.5610 12 6 8.0714 2.4032 2.4966 13 1 7.9637 1.4606 3.0126 14 6 7.9457 3.5876 3.1911 15 7 7.9785 4.7340 2.5475 16 14 7.7289 3.5640 5.0463 17 1 8.9015 2.9031 5.6734 18 1 7.6172 4.9567 5.5494 19 1 6.4947 2.8134 5.3908 20 6 9.8451 2.5432 0.7964 21 6 10.6881 1.5260 1.2031 22 6 12.0507 1.6334 0.9964 23 6 12.5711 2.7620 0.3912 24 6 11.7286 3.7815 -0.0109 25 6 10.3656 3.6721 0.1919 26 6 3.5819 -1.2007 -0.0009 27 8 4.2613 -2.3786 -0.0021 28 6 2.1963 -1.1983 -0.0005 29 1 -0.3633 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6536 2.1323 0.0004 33 1 4.1144 2.1424 0.0110 34 1 6.1652 -0.7495 -0.3576 35 1 8.1375 1.1036 -0.6705 36 1 8.2890 0.2744 0.8972 37 1 7.8897 5.5673 3.0360 38 1 10.2821 0.6461 1.6797 39 1 12.7090 0.8368 1.3101 40 1 13.6360 2.8472 0.2320 41 1 12.1351 4.6631 -0.4841 42 1 9.7072 4.4685 -0.1226 43 1 4.4585 -2.7199 0.8809 44 1 1.6548 -2.1326 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353520489.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:49 Heat of formation + Delta-G solvation = -53.075176 kcal Electronic energy + Delta-G solvation = -26757.505428 eV Core-core repulsion = 23024.681012 eV Total energy + Delta-G solvation = -3732.824416 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68080 -40.22645 -39.57585 -37.75848 -36.13588 -35.55088 -33.50877 -32.42983 -31.49466 -30.82218 -30.32874 -28.00287 -26.76448 -24.55842 -23.95792 -23.16748 -22.55901 -21.53090 -20.87156 -19.25947 -18.54604 -18.29466 -18.00975 -17.22523 -16.64654 -16.52416 -16.22356 -15.86057 -15.64146 -15.43166 -15.27787 -14.83779 -14.56219 -14.38795 -14.27605 -13.98714 -13.68071 -13.59691 -13.42771 -13.20212 -12.94556 -12.86980 -12.81616 -12.55275 -12.50050 -12.37509 -11.86514 -11.79526 -11.68540 -11.31481 -11.21261 -11.03083 -10.54579 -10.36745 -9.71399 -9.53557 -9.20182 -8.82003 -8.04674 -6.07884 0.21833 0.35476 0.78498 0.84507 1.35829 1.38103 1.42647 1.82262 2.15988 2.44682 2.69576 3.18111 3.26175 3.34845 3.86513 3.98805 4.07868 4.22043 4.32727 4.35630 4.40025 4.43854 4.53779 4.57272 4.61909 4.72099 4.77807 4.88906 4.91791 4.97936 5.03679 5.12888 5.17707 5.30475 5.33410 5.39233 5.50957 5.59472 5.64734 5.65870 5.77892 5.84307 5.95371 5.97770 6.18636 6.38066 6.46071 6.58708 6.78259 6.98132 7.38410 7.54174 9.03779 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.013416 B = 0.003512 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.528328 B = 7970.591533 C = 9060.363480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.097 4.097 3 C -0.116 4.116 4 C -0.143 4.143 5 C 0.111 3.889 6 N -0.665 5.665 7 C 0.509 3.491 8 O -0.526 6.526 9 C -0.115 4.115 10 C 0.085 3.915 11 H 0.021 0.979 12 C -0.485 4.485 13 H 0.046 0.954 14 C 0.023 3.977 15 N -0.913 5.913 16 Si 0.933 3.067 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.283 1.283 20 C -0.045 4.045 21 C -0.130 4.130 22 C -0.126 4.126 23 C -0.148 4.148 24 C -0.131 4.131 25 C -0.138 4.138 26 C 0.071 3.929 27 O -0.496 6.496 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.423 0.577 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.254 0.746 38 H 0.121 0.879 39 H 0.142 0.858 40 H 0.143 0.857 41 H 0.128 0.872 42 H 0.090 0.910 43 H 0.405 0.595 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.378 -13.761 -6.986 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.098 4.098 3 C -0.135 4.135 4 C -0.164 4.164 5 C 0.015 3.985 6 N -0.312 5.312 7 C 0.298 3.702 8 O -0.400 6.400 9 C -0.155 4.155 10 C 0.066 3.934 11 H 0.039 0.961 12 C -0.523 4.523 13 H 0.065 0.935 14 C -0.176 4.176 15 N -0.553 5.553 16 Si 0.760 3.240 17 H -0.192 1.192 18 H -0.215 1.215 19 H -0.209 1.209 20 C -0.046 4.046 21 C -0.148 4.148 22 C -0.144 4.144 23 C -0.166 4.166 24 C -0.149 4.149 25 C -0.156 4.156 26 C 0.024 3.976 27 O -0.308 6.308 28 C -0.143 4.143 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.153 0.847 33 H 0.135 0.865 34 H 0.261 0.739 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.063 0.937 38 H 0.139 0.861 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.146 0.854 42 H 0.109 0.891 43 H 0.263 0.737 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.756 -12.832 -7.168 15.785 hybrid contribution 0.130 0.479 1.579 1.655 sum -5.626 -12.354 -5.589 14.680 Atomic orbital electron populations 1.20795 0.88442 1.03918 1.03167 1.20097 0.97893 0.91782 1.00058 1.21175 0.92769 0.99153 1.00409 1.21331 0.95341 0.97587 1.02128 1.18427 0.83769 0.94158 1.02133 1.43570 1.04084 1.21804 1.61776 1.21336 0.91420 0.81056 0.76392 1.90725 1.70135 1.38459 1.40693 1.21709 0.89340 1.01823 1.02598 1.17574 0.88112 0.92658 0.95050 0.96082 1.20935 1.46471 0.91549 0.93363 0.93541 1.25474 0.95223 0.95817 1.01130 1.70039 1.51667 0.97439 1.36131 0.86009 0.78400 0.76743 0.82848 1.19176 1.21485 1.20872 1.20505 0.97673 0.93468 0.92928 1.21072 0.93739 0.99323 1.00658 1.21371 0.94863 0.98758 0.99408 1.21261 1.00165 0.94209 1.00938 1.21281 0.92988 0.99655 1.00996 1.21066 0.95736 0.97690 1.01142 1.18109 0.90451 0.83597 1.05422 1.84764 1.76230 1.34635 1.35157 1.21342 0.92002 0.99398 1.01569 0.90396 0.90804 0.89873 0.84729 0.86499 0.73891 0.88572 0.87786 0.93740 0.86111 0.83983 0.83962 0.85365 0.89138 0.73745 0.82594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.23 0.71 -0.90 16 2 C -0.10 -2.22 5.88 -19.85 -0.12 -2.34 16 3 C -0.12 -3.32 9.69 22.27 0.22 -3.10 16 4 C -0.14 -5.08 8.72 22.38 0.20 -4.88 16 5 C 0.11 3.57 6.45 38.19 0.25 3.82 16 6 N -0.67 -20.96 5.28 -303.13 -1.60 -22.56 16 7 C 0.51 20.48 7.38 87.66 0.65 21.13 16 8 O -0.53 -26.77 12.15 -3.07 -0.04 -26.80 16 9 C -0.11 -4.33 4.84 29.85 0.14 -4.19 16 10 C 0.09 4.14 1.61 -12.29 -0.02 4.12 16 11 H 0.02 1.21 7.09 -2.38 -0.02 1.19 16 12 C -0.49 -26.40 6.62 25.60 0.17 -26.23 16 13 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 14 C 0.02 1.30 5.45 84.65 0.46 1.76 16 15 N -0.91 -55.51 12.92 21.45 0.28 -55.23 16 16 Si 0.93 46.25 29.54 68.60 2.03 48.28 16 17 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.54 16 19 H -0.28 -14.06 7.11 99.48 0.71 -13.36 16 20 C -0.05 -2.00 4.77 -19.87 -0.09 -2.09 16 21 C -0.13 -4.91 8.94 22.27 0.20 -4.71 16 22 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 23 C -0.15 -4.60 10.05 22.27 0.22 -4.38 16 24 C -0.13 -4.70 10.05 22.27 0.22 -4.47 16 25 C -0.14 -6.03 9.67 22.27 0.22 -5.82 16 26 C 0.07 1.84 6.72 22.60 0.15 1.99 16 27 O -0.50 -10.14 12.92 -93.29 -1.21 -11.35 16 28 C -0.12 -2.75 9.63 22.35 0.22 -2.54 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.01 8.08 -2.39 -0.02 1.00 16 31 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 32 H 0.13 3.38 8.06 -2.91 -0.02 3.35 16 33 H 0.12 4.99 5.79 -2.91 -0.02 4.97 16 34 H 0.42 10.34 8.35 -92.71 -0.77 9.57 16 35 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 36 H 0.10 3.41 7.33 -2.39 -0.02 3.40 16 37 H 0.25 15.00 8.31 -92.71 -0.77 14.22 16 38 H 0.12 4.23 7.37 -2.91 -0.02 4.21 16 39 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 42 H 0.09 4.30 7.95 -2.91 -0.02 4.28 16 43 H 0.40 5.10 9.06 -74.06 -0.67 4.43 16 44 H 0.16 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -74.82 372.49 3.06 -71.75 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: -0.41 Total: 32.53 kcal Atomic # 6 Polarization: -40.63 SS G_CDS: 4.01 Total: -36.61 kcal Atomic # 7 Polarization: -76.47 SS G_CDS: -1.32 Total: -77.80 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.24 Total: -38.15 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -74.82 3.06 -71.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353520489.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.679 kcal (2) G-P(sol) polarization free energy of solvation -74.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds