Wall clock time and date at job start Tue Mar 31 2020 14:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.46937 * 2 1 4 4 C 1.38239 * 120.00006 * 90.00123 * 3 2 1 5 5 C 1.38240 * 119.99978 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99560 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46874 * 90.00182 * 7 6 5 9 9 C 1.46506 * 120.00098 * 84.99996 * 8 7 6 10 10 S 1.65599 * 120.00111 * 264.99675 * 8 7 6 11 11 O 1.42097 * 104.27550 * 26.07137 * 10 8 7 12 12 O 1.42103 * 104.27486 * 153.93037 * 10 8 7 13 13 C 1.81404 * 104.45045 * 270.00057 * 10 8 7 14 14 C 1.52997 * 109.46887 * 179.97438 * 13 10 8 15 15 C 1.53004 * 109.46815 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47072 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99730 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 89.99951 * 20 18 16 22 22 H 1.48500 * 109.47362 * 210.00153 * 20 18 16 23 23 H 1.48502 * 109.46999 * 330.00432 * 20 18 16 24 24 C 1.38237 * 120.00076 * 0.25398 * 6 5 4 25 25 C 1.38234 * 119.99779 * 359.49218 * 24 6 5 26 26 H 1.08997 * 109.47079 * 59.99800 * 1 2 3 27 27 H 1.09001 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46949 * 300.00015 * 1 2 3 29 29 H 1.08992 * 109.46843 * 239.99787 * 2 1 3 30 30 H 1.09001 * 109.46710 * 119.99916 * 2 1 3 31 31 H 1.07998 * 120.00018 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.99963 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47323 * 330.00195 * 7 6 5 34 34 H 1.09001 * 109.47037 * 209.99697 * 7 6 5 35 35 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 36 36 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 37 37 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 38 38 H 1.09002 * 109.47042 * 299.99928 * 13 10 8 39 39 H 1.09000 * 109.47032 * 60.00128 * 13 10 8 40 40 H 1.09002 * 109.47335 * 299.99888 * 14 13 10 41 41 H 1.09000 * 109.47067 * 60.00289 * 14 13 10 42 42 H 1.09002 * 109.47049 * 300.00028 * 15 14 13 43 43 H 1.09000 * 109.47096 * 60.00271 * 15 14 13 44 44 H 0.97002 * 119.99894 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99687 * 179.72834 * 24 6 5 46 46 H 1.08006 * 119.99649 * 180.25208 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4480 0.0000 8 7 4.9216 5.4480 -0.0001 9 6 5.6541 5.3375 -1.2640 10 16 5.7497 5.5730 1.4286 11 8 4.8537 5.0505 2.3998 12 8 6.9962 4.9426 1.1674 13 6 5.9760 7.3572 1.6660 14 6 6.7376 7.6055 2.9695 15 6 6.9280 9.1104 3.1700 16 6 7.6786 9.3551 4.4536 17 1 7.9893 8.5207 5.0650 18 6 7.9698 10.6441 4.8470 19 7 7.5920 11.6601 4.1023 20 14 8.8997 10.9475 6.4384 21 1 10.3589 10.9666 6.1632 22 1 8.4869 12.2537 7.0117 23 1 8.5926 9.8632 7.4056 24 6 2.7184 3.3775 -1.1972 25 6 2.2622 2.0726 -1.1971 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 1.5635 2.1325 32 1 2.9036 3.8848 2.1324 33 1 3.0933 5.9619 0.8900 34 1 3.0933 5.9619 -0.8900 35 1 5.8357 4.2863 -1.4880 36 1 5.0650 5.7832 -2.0656 37 1 6.6065 5.8607 -1.1790 38 1 6.5433 7.7659 0.8297 39 1 5.0018 7.8434 1.7165 40 1 6.1700 7.1969 3.8055 41 1 7.7118 7.1192 2.9194 42 1 7.4954 9.5194 2.3341 43 1 5.9536 9.5964 3.2203 44 1 7.7965 12.5669 4.3793 45 1 2.8942 3.8881 -2.1325 46 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354462966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:39 Heat of formation + Delta-G solvation = -70.598448 kcal Electronic energy + Delta-G solvation = -25141.663029 eV Core-core repulsion = 21543.522698 eV Total energy + Delta-G solvation = -3598.140331 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.70647 -36.95891 -36.64899 -35.69111 -34.67179 -34.11492 -32.19169 -30.99769 -30.43951 -27.82219 -27.32721 -25.10986 -23.68391 -23.05718 -22.75725 -20.74350 -20.54512 -18.75624 -17.53355 -16.76969 -16.57187 -16.15116 -15.71325 -15.62621 -15.31868 -14.92680 -14.50365 -14.21840 -13.99564 -13.95148 -13.72262 -13.43412 -13.04915 -12.97384 -12.59443 -12.48789 -12.28645 -12.12304 -11.96206 -11.91820 -11.78046 -11.72201 -11.48692 -11.34790 -11.20294 -11.08127 -10.93039 -10.89067 -10.83886 -10.41839 -9.96235 -9.54140 -9.25405 -9.00165 -8.96924 -8.66660 -8.41591 -6.06512 -4.09556 0.40493 1.19379 1.35336 2.76774 3.29958 3.36052 3.40187 3.67155 4.02619 4.31815 4.41590 4.48242 4.52126 4.65103 4.77907 4.90974 4.94597 5.07625 5.10847 5.15748 5.21436 5.29202 5.29856 5.35863 5.37545 5.44684 5.49684 5.60314 5.68705 5.75209 5.77833 5.85840 5.89526 5.96122 6.06063 6.23634 6.33065 6.42366 6.43923 6.52813 6.58985 6.86080 6.94595 7.55874 7.65724 7.91448 8.31945 8.96617 9.55129 11.04672 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.002358 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.889009 B =11873.758005 C =12310.029112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.123 4.123 5 C -0.092 4.092 6 C -0.115 4.115 7 C 0.165 3.835 8 N -1.003 6.003 9 C 0.096 3.904 10 S 2.595 3.405 11 O -0.956 6.956 12 O -0.959 6.959 13 C -0.610 4.610 14 C -0.105 4.105 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.058 0.942 18 C 0.057 3.943 19 N -0.895 5.895 20 Si 0.895 3.105 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.101 4.101 25 C -0.127 4.127 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.120 0.880 32 H 0.142 0.858 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.020 0.980 43 H 0.021 0.979 44 H 0.261 0.739 45 H 0.119 0.881 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 -18.392 -14.152 26.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.141 4.141 5 C -0.111 4.111 6 C -0.117 4.117 7 C 0.040 3.960 8 N -0.839 5.839 9 C -0.050 4.050 10 S 2.692 3.308 11 O -0.946 6.946 12 O -0.949 6.949 13 C -0.741 4.741 14 C -0.145 4.145 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.120 4.120 25 C -0.145 4.145 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.138 0.862 32 H 0.160 0.840 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.137 0.863 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.339 -18.935 -13.674 26.897 hybrid contribution 0.448 0.976 0.483 1.177 sum -12.892 -17.959 -13.190 25.743 Atomic orbital electron populations 1.21742 0.94743 1.01580 1.02251 1.20548 0.96159 0.92846 1.02765 1.19928 0.98847 0.96082 0.93363 1.21077 1.00467 0.95104 0.97459 1.21494 0.96046 0.94651 0.98878 1.20231 1.00688 0.97234 0.93502 1.20171 0.78865 0.93001 1.03969 1.57687 1.14014 1.89194 1.22989 1.21435 0.96135 1.02109 0.85276 1.05601 0.73753 0.78576 0.72836 1.93525 1.64476 1.77369 1.59243 1.93564 1.44083 1.73501 1.83780 1.30601 1.10585 1.23749 1.09184 1.21499 0.98153 1.03983 0.90860 1.19064 0.97409 0.87100 0.97195 1.21254 1.36197 0.92313 1.06685 0.92369 1.25026 0.95921 0.96205 0.97274 1.69957 1.46657 0.98691 1.38105 0.86549 0.80082 0.77633 0.83505 1.20565 1.21166 1.19737 1.20983 0.98908 0.94724 0.97339 1.20936 1.01278 0.94986 0.97324 0.92618 0.92509 0.92474 0.91190 0.91057 0.86154 0.83989 0.89050 0.89546 0.92628 0.91168 0.90914 0.85554 0.85477 0.91562 0.91669 0.96150 0.96110 0.92897 0.86285 0.86413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.81 5.13 -104.63 -0.54 -1.35 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.76 16 5 C -0.09 -1.15 9.12 -39.58 -0.36 -1.51 16 6 C -0.11 -1.29 5.46 -104.62 -0.57 -1.86 16 7 C 0.17 1.65 5.44 -5.19 -0.03 1.62 16 8 N -1.00 -11.47 3.10 -123.04 -0.38 -11.85 16 9 C 0.10 0.90 10.24 59.85 0.61 1.52 16 10 S 2.60 38.81 5.32 -107.50 -0.57 38.24 16 11 O -0.96 -15.97 14.82 -57.54 -0.85 -16.82 16 12 O -0.96 -17.28 17.09 -57.54 -0.98 -18.26 16 13 C -0.61 -9.39 6.18 37.16 0.23 -9.16 16 14 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 15 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 16 C -0.53 -14.84 9.11 -34.44 -0.31 -15.16 16 17 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 C -0.10 -0.98 9.70 -39.58 -0.38 -1.36 16 25 C -0.13 -1.20 9.70 -39.58 -0.38 -1.59 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 32 H 0.14 1.91 6.48 -52.49 -0.34 1.57 16 33 H 0.09 0.88 7.55 -51.93 -0.39 0.49 16 34 H 0.09 0.62 7.91 -51.93 -0.41 0.21 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.46 7.94 -51.93 -0.41 0.05 16 37 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 38 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 39 H 0.13 1.73 8.14 -51.92 -0.42 1.30 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 391.29 15.07 5.90 5.90 Total: -1.00 -34.46 391.29 -11.31 -45.77 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.84 Total: -1.63 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -2.30 Total: -32.12 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.36 Total: -37.66 kcal Atomic # 8 Polarization: -33.24 SS G_CDS: -1.84 Total: -35.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.81 SS G_CDS: -0.57 Total: 38.24 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.46 -11.31 -45.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354462966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.825 kcal (2) G-P(sol) polarization free energy of solvation -34.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds