Wall clock time and date at job start Tue Mar 31 2020 14:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50693 * 109.46937 * 2 1 4 4 C 1.38239 * 120.00006 * 90.00123 * 3 2 1 5 5 C 1.38240 * 119.99978 * 179.97438 * 4 3 2 6 6 C 1.38240 * 119.99775 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.99560 * 179.97438 * 6 5 4 8 8 N 1.46501 * 109.46874 * 90.00182 * 7 6 5 9 9 C 1.46506 * 120.00098 * 84.99996 * 8 7 6 10 10 S 1.65599 * 120.00111 * 264.99675 * 8 7 6 11 11 O 1.42097 * 104.27550 * 26.07137 * 10 8 7 12 12 O 1.42103 * 104.27486 * 153.93037 * 10 8 7 13 13 C 1.81404 * 104.45045 * 270.00057 * 10 8 7 14 14 C 1.52997 * 109.46887 * 179.97438 * 13 10 8 15 15 C 1.53004 * 109.46815 * 180.02562 * 14 13 10 16 16 C 1.50697 * 109.47072 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00056 * 0.02562 * 16 15 14 18 18 C 1.37882 * 120.00196 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99730 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00252 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47183 * 89.99951 * 20 18 16 22 22 H 1.48500 * 109.47362 * 210.00153 * 20 18 16 23 23 H 1.48502 * 109.46999 * 330.00432 * 20 18 16 24 24 C 1.38237 * 120.00076 * 0.25398 * 6 5 4 25 25 C 1.38234 * 119.99779 * 359.49218 * 24 6 5 26 26 H 1.08997 * 109.47079 * 59.99800 * 1 2 3 27 27 H 1.09001 * 109.47390 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46949 * 300.00015 * 1 2 3 29 29 H 1.08992 * 109.46843 * 239.99787 * 2 1 3 30 30 H 1.09001 * 109.46710 * 119.99916 * 2 1 3 31 31 H 1.07998 * 120.00018 * 359.97438 * 4 3 2 32 32 H 1.07993 * 119.99963 * 179.97438 * 5 4 3 33 33 H 1.09001 * 109.47323 * 330.00195 * 7 6 5 34 34 H 1.09001 * 109.47037 * 209.99697 * 7 6 5 35 35 H 1.09001 * 109.47060 * 270.00243 * 9 8 7 36 36 H 1.09004 * 109.47073 * 29.99732 * 9 8 7 37 37 H 1.09000 * 109.47212 * 149.99814 * 9 8 7 38 38 H 1.09002 * 109.47042 * 299.99928 * 13 10 8 39 39 H 1.09000 * 109.47032 * 60.00128 * 13 10 8 40 40 H 1.09002 * 109.47335 * 299.99888 * 14 13 10 41 41 H 1.09000 * 109.47067 * 60.00289 * 14 13 10 42 42 H 1.09002 * 109.47049 * 300.00028 * 15 14 13 43 43 H 1.09000 * 109.47096 * 60.00271 * 15 14 13 44 44 H 0.97002 * 119.99894 * 179.97438 * 19 18 16 45 45 H 1.07999 * 119.99687 * 179.72834 * 24 6 5 46 46 H 1.08006 * 119.99649 * 180.25208 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7240 3.3756 1.1972 6 6 2.9543 4.0272 0.0000 7 6 3.4566 5.4480 0.0000 8 7 4.9216 5.4480 -0.0001 9 6 5.6541 5.3375 -1.2640 10 16 5.7497 5.5730 1.4286 11 8 4.8537 5.0505 2.3998 12 8 6.9962 4.9426 1.1674 13 6 5.9760 7.3572 1.6660 14 6 6.7376 7.6055 2.9695 15 6 6.9280 9.1104 3.1700 16 6 7.6786 9.3551 4.4536 17 1 7.9893 8.5207 5.0650 18 6 7.9698 10.6441 4.8470 19 7 7.5920 11.6601 4.1023 20 14 8.8997 10.9475 6.4384 21 1 10.3589 10.9666 6.1632 22 1 8.4869 12.2537 7.0117 23 1 8.5926 9.8632 7.4056 24 6 2.7184 3.3775 -1.1972 25 6 2.2622 2.0726 -1.1971 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.0824 1.5635 2.1325 32 1 2.9036 3.8848 2.1324 33 1 3.0933 5.9619 0.8900 34 1 3.0933 5.9619 -0.8900 35 1 5.8357 4.2863 -1.4880 36 1 5.0650 5.7832 -2.0656 37 1 6.6065 5.8607 -1.1790 38 1 6.5433 7.7659 0.8297 39 1 5.0018 7.8434 1.7165 40 1 6.1700 7.1969 3.8055 41 1 7.7118 7.1192 2.9194 42 1 7.4954 9.5194 2.3341 43 1 5.9536 9.5964 3.2203 44 1 7.7965 12.5669 4.3793 45 1 2.8942 3.8881 -2.1325 46 1 2.0817 1.5637 -2.1325 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354462966.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:39 Heat of formation + Delta-G solvation = -90.988345 kcal Electronic energy + Delta-G solvation = -25142.547201 eV Core-core repulsion = 21543.522698 eV Total energy + Delta-G solvation = -3599.024503 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46275 -38.23296 -37.49980 -36.97154 -36.47586 -34.80370 -34.17567 -31.76551 -31.14247 -29.66675 -28.05844 -26.00789 -25.46955 -23.78017 -23.51408 -22.33979 -21.45132 -19.88700 -18.71022 -18.51388 -17.59843 -17.39273 -16.83490 -16.50783 -16.39707 -16.15209 -16.05519 -15.44242 -14.84586 -14.60693 -14.50420 -14.40692 -14.23027 -14.06891 -13.86715 -13.72509 -13.52904 -13.30634 -13.16581 -13.04404 -13.00300 -12.76820 -12.65490 -12.62638 -12.58520 -12.37920 -12.13083 -11.98149 -11.77514 -11.74699 -11.59777 -11.39206 -11.09699 -10.58830 -10.03625 -9.76403 -9.44977 -8.23957 -6.35027 -0.79136 0.40393 0.56011 1.39265 1.40013 1.51462 1.72923 2.38784 2.81436 2.87988 3.09335 3.16933 3.64452 3.81864 3.84858 3.89520 3.99847 4.06001 4.21830 4.27060 4.37006 4.49856 4.52823 4.60258 4.63699 4.66605 4.73087 4.76203 4.79615 4.91614 4.99068 5.01511 5.06736 5.08652 5.11452 5.19773 5.27806 5.38684 5.43448 5.55377 5.58309 5.61381 5.76787 5.77739 5.79118 6.18098 6.18200 6.80230 7.34170 8.87432 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.026537 B = 0.002358 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.889009 B =11873.758005 C =12310.029112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.087 4.087 4 C -0.141 4.141 5 C -0.119 4.119 6 C -0.128 4.128 7 C 0.158 3.842 8 N -0.994 5.994 9 C 0.085 3.915 10 S 2.616 3.384 11 O -0.977 6.977 12 O -0.991 6.991 13 C -0.609 4.609 14 C -0.106 4.106 15 C 0.031 3.969 16 C -0.553 4.553 17 H 0.059 0.941 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.963 3.037 21 H -0.272 1.272 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.100 4.100 25 C -0.131 4.131 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.052 0.948 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.265 0.735 45 H 0.147 0.853 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.210 -19.171 -15.780 28.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.123 4.123 3 C -0.087 4.087 4 C -0.159 4.159 5 C -0.138 4.138 6 C -0.130 4.130 7 C 0.034 3.966 8 N -0.832 5.832 9 C -0.059 4.059 10 S 2.712 3.288 11 O -0.967 6.967 12 O -0.982 6.982 13 C -0.739 4.739 14 C -0.145 4.145 15 C -0.007 4.007 16 C -0.591 4.591 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.568 5.568 20 Si 0.788 3.212 21 H -0.197 1.197 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.118 4.118 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.021 0.979 43 H 0.022 0.978 44 H 0.074 0.926 45 H 0.165 0.835 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.930 -19.715 -15.294 28.577 hybrid contribution 0.567 1.170 0.914 1.589 sum -13.363 -18.545 -14.380 27.006 Atomic orbital electron populations 1.21718 0.93983 1.02397 1.01913 1.20598 0.96747 0.91506 1.03416 1.20230 0.98252 0.97159 0.93088 1.21233 1.01151 0.95045 0.98468 1.21513 0.97861 0.95504 0.98901 1.20400 1.01116 0.97876 0.93568 1.20453 0.77573 0.92870 1.05747 1.57370 1.14674 1.88722 1.22404 1.21719 0.96751 1.02432 0.85036 1.04753 0.72985 0.77722 0.73312 1.93504 1.64754 1.77546 1.60919 1.93517 1.46043 1.74060 1.84542 1.30549 1.11140 1.25168 1.07049 1.21305 0.99036 1.00409 0.93756 1.18960 0.95770 0.90337 0.95610 1.21734 1.36707 0.92737 1.07949 0.92267 1.25943 0.96802 0.95981 1.00884 1.70067 1.47700 0.99161 1.39911 0.85472 0.78828 0.77761 0.79170 1.19695 1.20442 1.18966 1.21311 0.97849 0.94879 0.97781 1.21306 1.00402 0.95133 0.98062 0.92425 0.91123 0.93339 0.89882 0.91079 0.85944 0.86073 0.89258 0.85829 0.92918 0.87443 0.90955 0.83882 0.83606 0.91588 0.91890 0.97882 0.97769 0.92598 0.83495 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 71.98 0.71 -0.94 16 2 C -0.09 -1.16 6.06 29.85 0.18 -0.97 16 3 C -0.09 -1.62 5.13 -19.87 -0.10 -1.72 16 4 C -0.14 -3.19 9.70 22.27 0.22 -2.98 16 5 C -0.12 -3.02 9.12 22.27 0.20 -2.82 16 6 C -0.13 -2.69 5.46 -19.87 -0.11 -2.80 16 7 C 0.16 2.83 5.44 85.63 0.47 3.29 16 8 N -0.99 -20.95 3.10 -543.20 -1.68 -22.63 16 9 C 0.09 1.37 10.24 127.77 1.31 2.68 16 10 S 2.62 77.39 5.32 -56.49 -0.30 77.09 16 11 O -0.98 -33.20 14.82 -127.65 -1.89 -35.09 16 12 O -0.99 -35.69 17.09 -127.65 -2.18 -37.87 16 13 C -0.61 -18.44 6.18 71.98 0.44 -18.00 16 14 C -0.11 -4.37 5.16 30.59 0.16 -4.21 16 15 C 0.03 1.64 4.97 29.85 0.15 1.78 16 16 C -0.55 -31.73 9.11 25.60 0.23 -31.50 16 17 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 18 C 0.00 0.13 5.46 84.66 0.46 0.59 16 19 N -0.93 -55.74 13.29 21.45 0.28 -55.45 16 20 Si 0.96 44.40 29.54 68.60 2.03 46.43 16 21 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 C -0.10 -1.67 9.70 22.27 0.22 -1.46 16 25 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 30 H 0.07 0.95 8.09 -2.39 -0.02 0.94 16 31 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 32 H 0.12 3.49 6.48 -2.91 -0.02 3.47 16 33 H 0.09 1.63 7.55 -2.39 -0.02 1.61 16 34 H 0.12 1.30 7.91 -2.39 -0.02 1.28 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.11 0.95 7.94 -2.38 -0.02 0.93 16 37 H 0.07 1.19 7.79 -2.39 -0.02 1.17 16 38 H 0.14 3.82 8.14 -2.39 -0.02 3.80 16 39 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 42 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 43 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 44 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 45 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 46 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -75.54 391.29 1.94 -73.61 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.93 Total: 14.92 kcal Atomic # 6 Polarization: -65.75 SS G_CDS: 4.75 Total: -61.00 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -1.40 Total: -78.08 kcal Atomic # 8 Polarization: -68.89 SS G_CDS: -4.07 Total: -72.97 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 77.39 SS G_CDS: -0.30 Total: 77.09 kcal Total: -75.54 1.94 -73.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354462966.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.382 kcal (2) G-P(sol) polarization free energy of solvation -75.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds