Wall clock time and date at job start Tue Mar 31 2020 13:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38102 * 119.99000 * 2 1 4 4 C 1.38828 * 119.98428 * 180.23142 * 3 2 1 5 5 N 1.40111 * 120.01694 * 179.74582 * 4 3 2 6 6 C 1.34783 * 119.99910 * 144.63316 * 5 4 3 7 7 O 1.21289 * 119.99939 * 4.59744 * 6 5 4 8 8 C 1.50694 * 120.00027 * 184.59918 * 6 5 4 9 9 C 1.52997 * 109.47214 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47167 * 54.99978 * 9 8 6 11 11 C 1.50697 * 109.47120 * 294.99771 * 9 8 6 12 12 H 1.07996 * 120.00058 * 334.94685 * 11 9 8 13 13 C 1.37886 * 119.99833 * 154.93962 * 11 9 8 14 14 N 1.31510 * 119.99889 * 5.00322 * 13 11 9 15 15 Si 1.86798 * 119.99934 * 185.00348 * 13 11 9 16 16 H 1.48502 * 109.47079 * 90.00178 * 15 13 11 17 17 H 1.48498 * 109.47005 * 209.99712 * 15 13 11 18 18 H 1.48501 * 109.47147 * 330.00150 * 15 13 11 19 19 C 1.50699 * 109.47215 * 174.99841 * 9 8 6 20 20 C 1.38243 * 119.99840 * 54.81682 * 19 9 8 21 21 C 1.38235 * 120.00038 * 179.79092 * 20 19 9 22 22 C 1.38236 * 119.99590 * 0.43844 * 21 20 19 23 23 C 1.38230 * 120.00561 * 359.80709 * 22 21 20 24 24 C 1.38228 * 120.00271 * 235.08863 * 19 9 8 25 25 C 1.38870 * 119.96932 * 359.47060 * 4 3 2 26 26 C 1.38064 * 119.98247 * 0.28052 * 25 4 3 27 27 C 1.38699 * 119.98940 * 179.70799 * 2 1 3 28 28 O 1.35967 * 119.98920 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47031 * 270.28978 * 1 2 3 30 30 H 1.08997 * 109.47344 * 30.29348 * 1 2 3 31 31 H 1.09003 * 109.47487 * 150.29602 * 1 2 3 32 32 H 1.08005 * 120.01158 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00415 * 324.36220 * 5 4 3 34 34 H 1.08995 * 109.47145 * 300.00393 * 8 6 5 35 35 H 1.09009 * 109.47309 * 60.00069 * 8 6 5 36 36 H 0.97004 * 120.00072 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99942 * 359.97438 * 20 19 9 38 38 H 1.07996 * 120.00367 * 180.27077 * 21 20 19 39 39 H 1.08010 * 119.99842 * 179.83897 * 22 21 20 40 40 H 1.07998 * 120.00334 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00261 * 359.97438 * 24 19 9 42 42 H 1.07997 * 120.01090 * 180.29001 * 25 4 3 43 43 H 1.08004 * 119.99595 * 179.97438 * 26 25 4 44 44 H 0.96698 * 114.00021 * 270.02412 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1961 0.0000 4 6 3.5856 1.1960 -0.0049 5 7 4.2866 2.4091 -0.0102 6 6 5.4503 2.5180 0.6611 7 8 5.9328 1.5444 1.2001 8 6 6.1518 3.8492 0.7420 9 6 7.4393 3.6987 1.5547 10 1 8.0531 2.9097 1.1203 11 6 7.0960 3.3419 2.9780 12 1 6.1347 3.6162 3.3867 13 6 8.0092 2.6651 3.7586 14 7 9.2147 2.4175 3.2950 15 14 7.5339 2.0998 5.4744 16 1 6.9560 0.7337 5.4031 17 1 8.7393 2.0826 6.3414 18 1 6.5286 3.0335 6.0424 19 6 8.2021 4.9982 1.5327 20 6 7.5858 6.1684 1.9350 21 6 8.2868 7.3597 1.9189 22 6 9.6013 7.3823 1.4918 23 6 10.2161 6.2131 1.0846 24 6 9.5163 5.0210 1.1048 25 6 4.2792 -0.0071 0.0014 26 6 3.5878 -1.2021 0.0066 27 6 2.2003 -1.2013 0.0061 28 8 1.5200 -2.3785 0.0126 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 1.6573 2.1315 -0.0004 33 1 3.9365 3.1694 -0.5003 34 1 6.3944 4.1937 -0.2633 35 1 5.4991 4.5751 1.2271 36 1 9.8570 1.9410 3.8439 37 1 6.5575 6.1513 2.2648 38 1 7.8067 8.2731 2.2374 39 1 10.1483 8.3135 1.4767 40 1 11.2429 6.2309 0.7506 41 1 9.9966 4.1075 0.7866 42 1 5.3592 -0.0079 0.0024 43 1 4.1270 -2.1379 0.0110 44 1 1.3233 -2.7142 0.8979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356525990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:53 Heat of formation + Delta-G solvation = -34.211932 kcal Electronic energy + Delta-G solvation = -26588.194526 eV Core-core repulsion = 22856.188082 eV Total energy + Delta-G solvation = -3732.006444 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.31864 -39.04816 -38.24134 -36.59272 -34.25269 -33.83406 -32.48120 -31.49983 -29.98710 -29.46078 -28.32975 -26.69531 -25.55715 -23.09557 -22.41678 -21.85495 -21.46656 -19.96206 -19.30188 -18.28045 -17.24784 -16.63526 -16.38537 -15.86793 -15.53227 -15.32245 -14.55090 -14.42429 -14.14133 -14.08398 -13.82532 -13.52788 -13.23037 -13.05440 -12.80055 -12.59721 -12.42361 -12.22523 -12.03840 -11.90026 -11.84973 -11.68862 -11.62175 -10.93399 -10.75811 -10.60269 -10.44321 -10.24723 -10.06302 -9.80869 -9.50652 -9.21344 -8.99902 -8.67951 -8.38345 -8.01812 -7.76334 -7.59378 -5.97664 -3.97860 1.29621 1.42183 2.31227 2.37264 3.22526 3.36254 3.41455 3.42495 3.43859 3.80040 4.30893 4.48767 4.77230 4.84129 4.89576 5.20258 5.30671 5.42750 5.47911 5.55173 5.65457 5.67621 5.72479 5.79866 5.80644 5.84845 5.99823 6.05964 6.09077 6.25298 6.27488 6.43478 6.48944 6.53392 6.56254 6.66049 6.74295 6.92717 7.04112 7.11735 7.33542 7.41371 7.53204 7.67538 7.81029 7.83811 7.94992 8.03951 8.31332 8.80315 9.00119 9.64024 11.11571 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003304 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.204553 B = 8471.986654 C = 9543.126041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.160 3.840 5 N -0.692 5.692 6 C 0.511 3.489 7 O -0.476 6.476 8 C -0.122 4.122 9 C 0.084 3.916 10 H 0.065 0.935 11 C -0.491 4.491 12 H 0.051 0.949 13 C 0.075 3.925 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.276 1.276 19 C -0.019 4.019 20 C -0.122 4.122 21 C -0.132 4.132 22 C -0.156 4.156 23 C -0.129 4.129 24 C -0.107 4.107 25 C -0.112 4.112 26 C -0.121 4.121 27 C 0.073 3.927 28 O -0.498 6.498 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.126 0.874 33 H 0.405 0.595 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.259 0.741 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.146 0.854 43 H 0.128 0.872 44 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.056 0.607 -8.159 14.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 C -0.162 4.162 4 C 0.064 3.936 5 N -0.339 5.339 6 C 0.299 3.701 7 O -0.345 6.345 8 C -0.163 4.163 9 C 0.065 3.935 10 H 0.083 0.917 11 C -0.528 4.528 12 H 0.069 0.931 13 C -0.128 4.128 14 N -0.517 5.517 15 Si 0.715 3.285 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.020 4.020 20 C -0.140 4.140 21 C -0.151 4.151 22 C -0.174 4.174 23 C -0.147 4.147 24 C -0.125 4.125 25 C -0.132 4.132 26 C -0.140 4.140 27 C 0.028 3.972 28 O -0.308 6.308 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.144 0.856 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.146 0.854 44 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -11.401 -0.081 -8.269 14.084 hybrid contribution -0.305 0.055 1.550 1.580 sum -11.706 -0.027 -6.719 13.497 Atomic orbital electron populations 1.20652 0.90814 1.02916 1.02147 1.19898 0.96318 0.92056 1.01408 1.20676 0.92183 0.97760 1.05586 1.17840 0.90566 0.86546 0.98601 1.43991 1.24502 1.12266 1.53133 1.21203 0.79457 0.92536 0.76881 1.90747 1.63239 1.38879 1.41670 1.21830 1.00290 0.92794 1.01338 1.17788 0.89187 0.90793 0.95745 0.91680 1.20694 1.00522 1.35956 0.95671 0.93077 1.24813 0.94839 0.95210 0.97906 1.69913 1.04316 1.40440 1.37071 0.86687 0.77836 0.79348 0.84646 1.20668 1.21449 1.20133 1.20613 0.94378 0.95664 0.91303 1.20912 0.99849 0.92297 1.00952 1.20934 0.94914 0.97561 1.01645 1.20787 0.95522 0.97428 1.03673 1.20999 0.98912 0.93337 1.01466 1.21057 0.94763 0.96847 0.99850 1.21282 1.01744 0.90237 0.99931 1.21310 0.93153 0.98671 1.00848 1.18201 0.89715 0.84684 1.04610 1.84803 1.76453 1.36395 1.33122 0.91465 0.91644 0.91004 0.85590 0.76015 0.91038 0.89943 0.93089 0.87156 0.87756 0.87884 0.87695 0.86606 0.83614 0.85380 0.76188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.79 36.01 0.35 -0.66 16 2 C -0.10 -1.18 5.89 -104.50 -0.62 -1.80 16 3 C -0.14 -1.80 9.62 -39.41 -0.38 -2.18 16 4 C 0.16 2.41 6.30 -83.62 -0.53 1.88 16 5 N -0.69 -10.05 5.34 -9.83 -0.05 -10.11 16 6 C 0.51 9.58 7.42 -10.99 -0.08 9.50 16 7 O -0.48 -11.11 12.42 5.55 0.07 -11.04 16 8 C -0.12 -2.21 4.83 -27.89 -0.13 -2.34 16 9 C 0.08 1.93 1.53 -92.93 -0.14 1.79 16 10 H 0.07 1.71 7.25 -51.93 -0.38 1.34 16 11 C -0.49 -12.89 6.63 -34.44 -0.23 -13.12 16 12 H 0.05 1.35 7.81 -52.49 -0.41 0.94 16 13 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 14 N -0.88 -25.16 13.01 55.43 0.72 -24.44 16 15 Si 0.89 22.07 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 C -0.02 -0.41 4.77 -104.62 -0.50 -0.91 16 20 C -0.12 -2.40 8.95 -39.58 -0.35 -2.75 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 22 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 23 C -0.13 -2.40 10.05 -39.58 -0.40 -2.80 16 24 C -0.11 -2.27 9.67 -39.58 -0.38 -2.65 16 25 C -0.11 -1.82 8.69 -39.41 -0.34 -2.17 16 26 C -0.12 -1.74 9.98 -39.46 -0.39 -2.13 16 27 C 0.07 0.96 6.68 -39.22 -0.26 0.70 16 28 O -0.50 -5.60 12.54 -19.64 -0.25 -5.85 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.07 0.66 7.53 -51.93 -0.39 0.27 16 32 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.40 4.33 8.82 -40.82 -0.36 3.97 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.37 7.31 -51.92 -0.38 0.99 16 36 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 37 H 0.11 2.04 7.34 -52.49 -0.39 1.65 16 38 H 0.10 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 2.53 7.95 -52.49 -0.42 2.12 16 42 H 0.15 2.68 6.22 -52.49 -0.33 2.35 16 43 H 0.13 1.66 8.06 -52.48 -0.42 1.24 16 44 H 0.38 2.66 9.06 45.56 0.41 3.07 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -32.64 372.79 -9.34 -41.98 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -5.15 Total: 10.29 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: -5.28 Total: -23.50 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.67 Total: -34.55 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.18 Total: -16.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.64 -9.34 -41.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356525990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.771 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds