Wall clock time and date at job start Tue Mar 31 2020 13:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38102 * 119.99000 * 2 1 4 4 C 1.38828 * 119.98428 * 180.23142 * 3 2 1 5 5 N 1.40111 * 120.01694 * 179.74582 * 4 3 2 6 6 C 1.34783 * 119.99910 * 144.63316 * 5 4 3 7 7 O 1.21289 * 119.99939 * 4.59744 * 6 5 4 8 8 C 1.50694 * 120.00027 * 184.59918 * 6 5 4 9 9 C 1.52997 * 109.47214 * 179.97438 * 8 6 5 10 10 H 1.09001 * 109.47167 * 54.99978 * 9 8 6 11 11 C 1.50697 * 109.47120 * 294.99771 * 9 8 6 12 12 H 1.07996 * 120.00058 * 334.94685 * 11 9 8 13 13 C 1.37886 * 119.99833 * 154.93962 * 11 9 8 14 14 N 1.31510 * 119.99889 * 5.00322 * 13 11 9 15 15 Si 1.86798 * 119.99934 * 185.00348 * 13 11 9 16 16 H 1.48502 * 109.47079 * 90.00178 * 15 13 11 17 17 H 1.48498 * 109.47005 * 209.99712 * 15 13 11 18 18 H 1.48501 * 109.47147 * 330.00150 * 15 13 11 19 19 C 1.50699 * 109.47215 * 174.99841 * 9 8 6 20 20 C 1.38243 * 119.99840 * 54.81682 * 19 9 8 21 21 C 1.38235 * 120.00038 * 179.79092 * 20 19 9 22 22 C 1.38236 * 119.99590 * 0.43844 * 21 20 19 23 23 C 1.38230 * 120.00561 * 359.80709 * 22 21 20 24 24 C 1.38228 * 120.00271 * 235.08863 * 19 9 8 25 25 C 1.38870 * 119.96932 * 359.47060 * 4 3 2 26 26 C 1.38064 * 119.98247 * 0.28052 * 25 4 3 27 27 C 1.38699 * 119.98940 * 179.70799 * 2 1 3 28 28 O 1.35967 * 119.98920 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47031 * 270.28978 * 1 2 3 30 30 H 1.08997 * 109.47344 * 30.29348 * 1 2 3 31 31 H 1.09003 * 109.47487 * 150.29602 * 1 2 3 32 32 H 1.08005 * 120.01158 * 359.97438 * 3 2 1 33 33 H 0.96993 * 120.00415 * 324.36220 * 5 4 3 34 34 H 1.08995 * 109.47145 * 300.00393 * 8 6 5 35 35 H 1.09009 * 109.47309 * 60.00069 * 8 6 5 36 36 H 0.97004 * 120.00072 * 180.02562 * 14 13 11 37 37 H 1.08001 * 119.99942 * 359.97438 * 20 19 9 38 38 H 1.07996 * 120.00367 * 180.27077 * 21 20 19 39 39 H 1.08010 * 119.99842 * 179.83897 * 22 21 20 40 40 H 1.07998 * 120.00334 * 179.97438 * 23 22 21 41 41 H 1.07999 * 120.00261 * 359.97438 * 24 19 9 42 42 H 1.07997 * 120.01090 * 180.29001 * 25 4 3 43 43 H 1.08004 * 119.99595 * 179.97438 * 26 25 4 44 44 H 0.96698 * 114.00021 * 270.02412 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1961 0.0000 4 6 3.5856 1.1960 -0.0049 5 7 4.2866 2.4091 -0.0102 6 6 5.4503 2.5180 0.6611 7 8 5.9328 1.5444 1.2001 8 6 6.1518 3.8492 0.7420 9 6 7.4393 3.6987 1.5547 10 1 8.0531 2.9097 1.1203 11 6 7.0960 3.3419 2.9780 12 1 6.1347 3.6162 3.3867 13 6 8.0092 2.6651 3.7586 14 7 9.2147 2.4175 3.2950 15 14 7.5339 2.0998 5.4744 16 1 6.9560 0.7337 5.4031 17 1 8.7393 2.0826 6.3414 18 1 6.5286 3.0335 6.0424 19 6 8.2021 4.9982 1.5327 20 6 7.5858 6.1684 1.9350 21 6 8.2868 7.3597 1.9189 22 6 9.6013 7.3823 1.4918 23 6 10.2161 6.2131 1.0846 24 6 9.5163 5.0210 1.1048 25 6 4.2792 -0.0071 0.0014 26 6 3.5878 -1.2021 0.0066 27 6 2.2003 -1.2013 0.0061 28 8 1.5200 -2.3785 0.0126 29 1 -0.3633 0.0052 1.0277 30 1 -0.3634 0.8873 -0.5184 31 1 -0.3634 -0.8926 -0.5092 32 1 1.6573 2.1315 -0.0004 33 1 3.9365 3.1694 -0.5003 34 1 6.3944 4.1937 -0.2633 35 1 5.4991 4.5751 1.2271 36 1 9.8570 1.9410 3.8439 37 1 6.5575 6.1513 2.2648 38 1 7.8067 8.2731 2.2374 39 1 10.1483 8.3135 1.4767 40 1 11.2429 6.2309 0.7506 41 1 9.9966 4.1075 0.7866 42 1 5.3592 -0.0079 0.0024 43 1 4.1270 -2.1379 0.0110 44 1 1.3233 -2.7142 0.8979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356525990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:52 Heat of formation + Delta-G solvation = -54.545890 kcal Electronic energy + Delta-G solvation = -26589.076273 eV Core-core repulsion = 22856.188082 eV Total energy + Delta-G solvation = -3732.888191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54742 -40.33083 -39.68143 -37.71413 -35.85216 -35.21908 -33.59146 -33.30657 -31.46873 -30.79565 -29.60707 -27.75185 -27.28509 -24.72700 -23.50651 -23.23074 -22.81984 -21.36223 -20.80690 -19.27234 -18.67468 -18.32783 -17.82978 -17.19342 -16.68651 -16.51926 -16.40827 -15.85974 -15.69368 -15.40711 -15.10719 -14.78860 -14.49441 -14.24671 -14.11147 -13.96091 -13.67799 -13.60000 -13.50281 -13.19269 -13.12654 -12.91976 -12.83556 -12.74750 -12.53914 -12.45608 -11.83733 -11.66912 -11.44082 -11.33928 -11.09345 -10.96455 -10.60942 -10.37658 -9.75155 -9.50390 -9.16825 -8.90892 -8.05080 -6.08152 0.20055 0.34662 0.81516 0.87948 1.33833 1.38406 1.42810 1.82193 2.19050 2.44434 2.69916 3.20490 3.35649 3.36638 3.86443 3.90753 4.05059 4.24452 4.29988 4.37484 4.42006 4.48122 4.54563 4.57113 4.63081 4.75089 4.82128 4.86521 4.93487 4.94986 5.00744 5.08608 5.21059 5.35275 5.37318 5.42003 5.50418 5.53890 5.57388 5.63849 5.79399 5.86962 5.97516 5.98581 6.20198 6.39725 6.48803 6.63038 6.85962 6.98025 7.43265 7.54410 9.02970 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014339 B = 0.003304 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.204553 B = 8471.986654 C = 9543.126041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.096 4.096 3 C -0.130 4.130 4 C 0.137 3.863 5 N -0.671 5.671 6 C 0.510 3.490 7 O -0.534 6.534 8 C -0.115 4.115 9 C 0.086 3.914 10 H 0.017 0.983 11 C -0.482 4.482 12 H 0.047 0.953 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 0.931 3.069 16 H -0.291 1.291 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.041 4.041 20 C -0.131 4.131 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.133 4.133 25 C -0.137 4.137 26 C -0.135 4.135 27 C 0.077 3.923 28 O -0.501 6.501 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.158 0.842 33 H 0.426 0.574 34 H 0.100 0.900 35 H 0.106 0.894 36 H 0.253 0.747 37 H 0.121 0.879 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.112 0.888 43 H 0.131 0.869 44 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.938 3.341 -8.312 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.097 4.097 3 C -0.151 4.151 4 C 0.042 3.958 5 N -0.319 5.319 6 C 0.299 3.701 7 O -0.408 6.408 8 C -0.155 4.155 9 C 0.067 3.933 10 H 0.035 0.965 11 C -0.521 4.521 12 H 0.065 0.935 13 C -0.177 4.177 14 N -0.552 5.552 15 Si 0.759 3.241 16 H -0.218 1.218 17 H -0.213 1.213 18 H -0.188 1.188 19 C -0.042 4.042 20 C -0.149 4.149 21 C -0.145 4.145 22 C -0.167 4.167 23 C -0.150 4.150 24 C -0.152 4.152 25 C -0.158 4.158 26 C -0.154 4.154 27 C 0.032 3.968 28 O -0.313 6.313 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.176 0.824 33 H 0.264 0.736 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.062 0.938 37 H 0.139 0.861 38 H 0.159 0.841 39 H 0.159 0.841 40 H 0.145 0.855 41 H 0.107 0.893 42 H 0.130 0.870 43 H 0.149 0.851 44 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.343 2.679 -8.439 16.856 hybrid contribution 0.509 -0.818 1.504 1.786 sum -13.834 1.860 -6.935 15.587 Atomic orbital electron populations 1.20713 0.88086 1.03993 1.03333 1.20314 0.98213 0.91348 0.99831 1.20970 0.90896 0.99398 1.03806 1.18006 0.91706 0.85919 1.00140 1.43618 1.23109 1.13031 1.52138 1.21335 0.80225 0.92005 0.76510 1.90742 1.64968 1.40509 1.44554 1.21709 0.98333 0.93060 1.02357 1.17572 0.90895 0.90446 0.94396 0.96514 1.20989 0.99582 1.34480 0.97006 0.93498 1.25461 0.95158 0.96286 1.00795 1.70048 1.05128 1.42130 1.37880 0.85966 0.77706 0.78477 0.81933 1.21832 1.21253 1.18827 1.20461 0.94570 0.95770 0.93371 1.21065 1.00594 0.92254 1.00950 1.21355 0.94992 0.98052 1.00063 1.21240 0.95635 0.98199 1.01624 1.21268 0.99909 0.92830 1.01040 1.21029 0.95221 0.97226 1.01715 1.21132 1.00425 0.92022 1.02224 1.21400 0.94271 0.98190 1.01570 1.18271 0.89165 0.85861 1.03478 1.84746 1.75879 1.35688 1.34997 0.90066 0.89805 0.90752 0.82411 0.73568 0.88182 0.87634 0.93787 0.86103 0.84056 0.84100 0.85535 0.89255 0.87003 0.85108 0.73750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 9.79 71.24 0.70 -0.85 16 2 C -0.10 -2.13 5.89 -19.79 -0.12 -2.24 16 3 C -0.13 -3.03 9.62 22.38 0.22 -2.81 16 4 C 0.14 4.12 6.30 38.11 0.24 4.36 16 5 N -0.67 -19.22 5.34 -303.39 -1.62 -20.84 16 6 C 0.51 19.70 7.42 87.65 0.65 20.35 16 7 O -0.53 -26.65 12.42 -3.06 -0.04 -26.69 16 8 C -0.11 -4.15 4.83 29.85 0.14 -4.01 16 9 C 0.09 4.12 1.53 -12.29 -0.02 4.10 16 10 H 0.02 0.95 7.25 -2.39 -0.02 0.93 16 11 C -0.48 -26.14 6.63 25.60 0.17 -25.97 16 12 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 13 C 0.02 1.26 5.45 84.66 0.46 1.72 16 14 N -0.91 -55.16 13.01 21.45 0.28 -54.88 16 15 Si 0.93 46.60 29.54 68.60 2.03 48.62 16 16 H -0.29 -14.94 7.11 99.48 0.71 -14.23 16 17 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 18 H -0.26 -12.51 7.11 99.48 0.71 -11.81 16 19 C -0.04 -1.81 4.77 -19.87 -0.09 -1.90 16 20 C -0.13 -4.90 8.95 22.27 0.20 -4.70 16 21 C -0.13 -4.03 10.05 22.27 0.22 -3.80 16 22 C -0.15 -4.66 10.05 22.27 0.22 -4.44 16 23 C -0.13 -4.77 10.05 22.27 0.22 -4.55 16 24 C -0.13 -5.84 9.67 22.27 0.22 -5.62 16 25 C -0.14 -4.77 8.69 22.38 0.19 -4.57 16 26 C -0.14 -4.04 9.98 22.35 0.22 -3.81 16 27 C 0.08 1.95 6.68 22.50 0.15 2.10 16 28 O -0.50 -10.33 12.54 -93.17 -1.17 -11.50 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.08 0.96 8.09 -2.39 -0.02 0.95 16 31 H 0.07 1.10 7.53 -2.39 -0.02 1.08 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.43 8.28 8.82 -92.71 -0.82 7.46 16 34 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 35 H 0.11 3.32 7.31 -2.38 -0.02 3.30 16 36 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 37 H 0.12 4.18 7.34 -2.91 -0.02 4.16 16 38 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 39 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.13 3.89 8.06 -2.91 -0.02 3.86 16 41 H 0.09 4.25 7.95 -2.91 -0.02 4.23 16 42 H 0.11 4.61 6.22 -2.91 -0.02 4.59 16 43 H 0.13 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.40 4.75 9.06 -74.06 -0.67 4.07 16 Total: -1.00 -76.19 372.79 3.03 -73.16 By element: Atomic # 1 Polarization: 29.23 SS G_CDS: -0.45 Total: 28.77 kcal Atomic # 6 Polarization: -40.64 SS G_CDS: 4.00 Total: -36.63 kcal Atomic # 7 Polarization: -74.39 SS G_CDS: -1.34 Total: -75.73 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -1.21 Total: -38.19 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.62 kcal Total: -76.19 3.03 -73.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356525990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.612 kcal (2) G-P(sol) polarization free energy of solvation -76.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds