Wall clock time and date at job start Tue Mar 31 2020 13:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38114 * 119.98907 * 2 1 4 4 C 1.38827 * 119.98221 * 180.25565 * 3 2 1 5 5 N 1.40118 * 120.01325 * 179.74129 * 4 3 2 6 6 C 1.34774 * 119.99762 * 213.95338 * 5 4 3 7 7 O 1.21294 * 120.00186 * 5.29742 * 6 5 4 8 8 C 1.50703 * 119.99806 * 185.29258 * 6 5 4 9 9 C 1.52998 * 109.47153 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46705 * 306.19767 * 9 8 6 11 11 C 1.50701 * 109.47134 * 66.19657 * 9 8 6 12 12 H 1.07993 * 119.99733 * 34.41673 * 11 9 8 13 13 C 1.37874 * 119.99768 * 214.40959 * 11 9 8 14 14 N 1.31511 * 120.00471 * 4.41281 * 13 11 9 15 15 Si 1.86809 * 119.99654 * 184.68440 * 13 11 9 16 16 H 1.48500 * 109.47039 * 269.72860 * 15 13 11 17 17 H 1.48491 * 109.46887 * 29.72977 * 15 13 11 18 18 H 1.48499 * 109.46976 * 149.72900 * 15 13 11 19 19 C 1.50701 * 109.47067 * 186.19808 * 9 8 6 20 20 C 1.38233 * 119.99842 * 304.47771 * 19 9 8 21 21 C 1.38243 * 119.99451 * 179.78885 * 20 19 9 22 22 C 1.38226 * 120.00134 * 0.44084 * 21 20 19 23 23 C 1.38240 * 120.00304 * 359.81361 * 22 21 20 24 24 C 1.38237 * 119.99853 * 359.97358 * 23 22 21 25 25 C 1.38866 * 119.97331 * 359.46541 * 4 3 2 26 26 C 1.38071 * 119.98136 * 0.27916 * 25 4 3 27 27 C 1.38696 * 119.99859 * 179.72095 * 2 1 3 28 28 O 1.35976 * 119.98236 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47068 * 270.27771 * 1 2 3 30 30 H 1.08999 * 109.47503 * 30.27822 * 1 2 3 31 31 H 1.09003 * 109.46683 * 150.27791 * 1 2 3 32 32 H 1.07995 * 120.00969 * 359.97438 * 3 2 1 33 33 H 0.96998 * 119.99932 * 33.96254 * 5 4 3 34 34 H 1.09002 * 109.46883 * 59.99968 * 8 6 5 35 35 H 1.09004 * 109.47182 * 300.00665 * 8 6 5 36 36 H 0.97002 * 119.99959 * 355.04016 * 14 13 11 37 37 H 1.07997 * 120.00268 * 359.97438 * 20 19 9 38 38 H 1.07998 * 119.99390 * 180.27251 * 21 20 19 39 39 H 1.08004 * 120.00285 * 179.83293 * 22 21 20 40 40 H 1.08001 * 120.00280 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00112 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00796 * 180.29943 * 25 4 3 43 43 H 1.07996 * 119.98958 * 179.97438 * 26 25 4 44 44 H 0.96700 * 113.99464 * 270.01877 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1962 0.0000 4 6 3.5856 1.1961 -0.0054 5 7 4.2866 2.4093 -0.0108 6 6 5.4595 2.5068 -0.6675 7 8 5.8613 1.5757 -1.3328 8 6 6.2716 3.7730 -0.5752 9 6 7.5469 3.6226 -1.4071 10 1 8.0781 2.7223 -1.0980 11 6 7.1853 3.5167 -2.8662 12 1 6.3401 4.0656 -3.2543 13 6 7.9336 2.7190 -3.7057 14 7 8.9086 1.9836 -3.2178 15 14 7.5675 2.6888 -5.5373 16 1 6.5744 1.6232 -5.8260 17 1 7.0179 4.0039 -5.9539 18 1 8.8194 2.4153 -6.2878 19 6 8.4300 4.8250 -1.1944 20 6 7.9368 6.0949 -1.4286 21 6 8.7456 7.1982 -1.2293 22 6 10.0503 7.0309 -0.8045 23 6 10.5452 5.7607 -0.5753 24 6 9.7351 4.6577 -0.7704 25 6 4.2792 -0.0069 0.0005 26 6 3.5878 -1.2020 0.0058 27 6 2.2004 -1.2011 0.0059 28 8 1.5201 -2.3785 0.0121 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5181 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6573 2.1315 -0.0004 33 1 3.9277 3.1788 0.4581 34 1 6.5361 3.9599 0.4655 35 1 5.6857 4.6091 -0.9569 36 1 9.1485 2.0559 -2.2807 37 1 6.9187 6.2254 -1.7645 38 1 8.3589 8.1906 -1.4081 39 1 10.6831 7.8927 -0.6514 40 1 11.5648 5.6300 -0.2438 41 1 10.1218 3.6652 -0.5917 42 1 5.3592 -0.0077 0.0012 43 1 4.1271 -2.1377 0.0100 44 1 1.3235 -2.7143 0.8973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356525992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:57 Heat of formation + Delta-G solvation = -35.678748 kcal Electronic energy + Delta-G solvation = -26619.535212 eV Core-core repulsion = 22887.465162 eV Total energy + Delta-G solvation = -3732.070050 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.33414 -39.10801 -38.40182 -36.62570 -34.47329 -33.90451 -32.49719 -31.42769 -30.17589 -29.53903 -28.36087 -26.69614 -25.13211 -23.14578 -22.46009 -21.97455 -21.58424 -20.11204 -19.50427 -18.28616 -17.40402 -16.71989 -16.46585 -15.95946 -15.59434 -15.42159 -14.76991 -14.28042 -14.16027 -13.99064 -13.69577 -13.54859 -13.24201 -13.15925 -12.94663 -12.71723 -12.57523 -12.37288 -12.19125 -11.99426 -11.88919 -11.78337 -11.49519 -11.02540 -10.74414 -10.49613 -10.46183 -10.23656 -10.08963 -9.82735 -9.63736 -9.19210 -8.77879 -8.68742 -8.25163 -8.20906 -7.75099 -7.71327 -6.27262 -3.95466 1.28283 1.40170 2.12080 2.18255 3.21373 3.41113 3.49379 3.53064 3.66038 3.78748 4.27104 4.54131 4.63402 4.82770 4.88344 5.18885 5.28520 5.43289 5.47393 5.53982 5.54403 5.55806 5.66141 5.69753 5.77908 5.79736 5.89851 5.97920 6.06707 6.08630 6.24085 6.25310 6.34812 6.45447 6.54603 6.60097 6.65298 6.73735 6.86391 7.08822 7.13564 7.16131 7.31533 7.64589 7.66686 7.77791 7.80406 8.15352 8.45667 8.78969 8.93573 9.73594 11.12175 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.003285 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.521306 B = 8520.521715 C = 9524.650432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.143 4.143 4 C 0.164 3.836 5 N -0.692 5.692 6 C 0.510 3.490 7 O -0.471 6.471 8 C -0.117 4.117 9 C 0.069 3.931 10 H 0.057 0.943 11 C -0.572 4.572 12 H 0.046 0.954 13 C 0.036 3.964 14 N -0.900 5.900 15 Si 1.062 2.938 16 H -0.288 1.288 17 H -0.290 1.290 18 H -0.285 1.285 19 C -0.031 4.031 20 C -0.116 4.116 21 C -0.127 4.127 22 C -0.154 4.154 23 C -0.123 4.123 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.118 4.118 27 C 0.072 3.928 28 O -0.496 6.496 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.404 0.596 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.270 0.730 37 H 0.113 0.887 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.112 0.888 42 H 0.139 0.861 43 H 0.129 0.871 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 1.476 11.715 16.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.095 4.095 3 C -0.164 4.164 4 C 0.068 3.932 5 N -0.340 5.340 6 C 0.298 3.702 7 O -0.340 6.340 8 C -0.157 4.157 9 C 0.050 3.950 10 H 0.075 0.925 11 C -0.609 4.609 12 H 0.064 0.936 13 C -0.170 4.170 14 N -0.535 5.535 15 Si 0.891 3.109 16 H -0.215 1.215 17 H -0.216 1.216 18 H -0.211 1.211 19 C -0.032 4.032 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.172 4.172 23 C -0.141 4.141 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.137 4.137 27 C 0.027 3.973 28 O -0.305 6.305 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.144 0.856 33 H 0.239 0.761 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.131 0.869 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -10.664 0.162 9.142 14.048 hybrid contribution -0.595 1.204 1.950 2.368 sum -11.260 1.366 11.092 15.864 Atomic orbital electron populations 1.20654 0.90774 1.03132 1.01979 1.19897 0.96338 0.92038 1.01200 1.20634 0.92138 0.97799 1.05788 1.17813 0.90610 0.86547 0.98198 1.44010 1.23575 1.11664 1.54702 1.21141 0.80038 0.91119 0.77933 1.90800 1.68200 1.39484 1.35473 1.21746 0.99033 0.94187 1.00769 1.17908 0.89052 0.91769 0.96264 0.92538 1.21534 1.15693 1.31603 0.92084 0.93589 1.25570 0.94037 0.91987 1.05440 1.70736 1.29274 1.36551 1.16958 0.83647 0.76070 0.75820 0.75318 1.21512 1.21586 1.21105 1.20792 0.95010 0.96203 0.91152 1.20900 0.99784 0.92177 1.00597 1.21000 0.94455 0.98102 1.00995 1.20830 0.95959 0.96591 1.03850 1.20994 0.98918 0.93005 1.01152 1.21070 0.94438 0.98119 1.01061 1.21101 1.01294 0.90374 1.00459 1.21280 0.93186 0.98563 1.00660 1.18178 0.89685 0.84664 1.04750 1.84850 1.76433 1.36356 1.32862 0.91523 0.91591 0.90922 0.85585 0.76111 0.91276 0.90019 0.91829 0.86914 0.87416 0.87523 0.87373 0.86978 0.84307 0.85304 0.76422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.79 36.00 0.35 -0.67 16 2 C -0.09 -1.17 5.89 -104.50 -0.62 -1.79 16 3 C -0.14 -1.86 9.61 -39.41 -0.38 -2.24 16 4 C 0.16 2.53 6.26 -83.62 -0.52 2.00 16 5 N -0.69 -10.39 5.35 -9.83 -0.05 -10.44 16 6 C 0.51 9.91 7.32 -10.99 -0.08 9.83 16 7 O -0.47 -11.50 12.78 5.55 0.07 -11.43 16 8 C -0.12 -2.17 4.81 -27.88 -0.13 -2.30 16 9 C 0.07 1.60 1.59 -92.92 -0.15 1.45 16 10 H 0.06 1.47 5.72 -51.92 -0.30 1.17 16 11 C -0.57 -15.28 6.70 -34.44 -0.23 -15.51 16 12 H 0.05 1.24 7.82 -52.49 -0.41 0.83 16 13 C 0.04 1.03 5.46 -17.82 -0.10 0.93 16 14 N -0.90 -27.07 13.63 55.43 0.76 -26.31 16 15 Si 1.06 26.25 29.91 -169.99 -5.08 21.17 16 16 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C -0.03 -0.66 4.77 -104.62 -0.50 -1.16 16 20 C -0.12 -2.25 8.94 -39.58 -0.35 -2.61 16 21 C -0.13 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.15 -2.57 10.05 -39.58 -0.40 -2.97 16 23 C -0.12 -2.19 10.05 -39.58 -0.40 -2.58 16 24 C -0.13 -2.63 9.67 -39.58 -0.38 -3.02 16 25 C -0.11 -1.86 8.65 -39.41 -0.34 -2.20 16 26 C -0.12 -1.72 9.98 -39.46 -0.39 -2.12 16 27 C 0.07 0.96 6.68 -39.23 -0.26 0.70 16 28 O -0.50 -5.63 12.54 -19.66 -0.25 -5.88 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 31 H 0.07 0.70 7.53 -51.93 -0.39 0.31 16 32 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.40 4.48 8.82 -40.82 -0.36 4.12 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.40 7.39 -51.93 -0.38 1.01 16 36 H 0.27 8.00 6.47 -40.82 -0.26 7.73 16 37 H 0.11 2.08 7.41 -52.49 -0.39 1.69 16 38 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.11 2.31 7.95 -52.49 -0.42 1.89 16 42 H 0.14 2.59 6.48 -52.49 -0.34 2.25 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.38 2.39 9.06 45.56 0.41 2.80 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -34.29 371.09 -9.26 -43.55 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: -5.01 Total: 10.57 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -5.28 Total: -26.82 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.70 Total: -36.75 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.18 Total: -17.30 kcal Atomic # 14 Polarization: 26.25 SS G_CDS: -5.08 Total: 21.17 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.29 -9.26 -43.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356525992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.870 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds