Wall clock time and date at job start Tue Mar 31 2020 13:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38114 * 119.98907 * 2 1 4 4 C 1.38827 * 119.98221 * 180.25565 * 3 2 1 5 5 N 1.40118 * 120.01325 * 179.74129 * 4 3 2 6 6 C 1.34774 * 119.99762 * 213.95338 * 5 4 3 7 7 O 1.21294 * 120.00186 * 5.29742 * 6 5 4 8 8 C 1.50703 * 119.99806 * 185.29258 * 6 5 4 9 9 C 1.52998 * 109.47153 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.46705 * 306.19767 * 9 8 6 11 11 C 1.50701 * 109.47134 * 66.19657 * 9 8 6 12 12 H 1.07993 * 119.99733 * 34.41673 * 11 9 8 13 13 C 1.37874 * 119.99768 * 214.40959 * 11 9 8 14 14 N 1.31511 * 120.00471 * 4.41281 * 13 11 9 15 15 Si 1.86809 * 119.99654 * 184.68440 * 13 11 9 16 16 H 1.48500 * 109.47039 * 269.72860 * 15 13 11 17 17 H 1.48491 * 109.46887 * 29.72977 * 15 13 11 18 18 H 1.48499 * 109.46976 * 149.72900 * 15 13 11 19 19 C 1.50701 * 109.47067 * 186.19808 * 9 8 6 20 20 C 1.38233 * 119.99842 * 304.47771 * 19 9 8 21 21 C 1.38243 * 119.99451 * 179.78885 * 20 19 9 22 22 C 1.38226 * 120.00134 * 0.44084 * 21 20 19 23 23 C 1.38240 * 120.00304 * 359.81361 * 22 21 20 24 24 C 1.38237 * 119.99853 * 359.97358 * 23 22 21 25 25 C 1.38866 * 119.97331 * 359.46541 * 4 3 2 26 26 C 1.38071 * 119.98136 * 0.27916 * 25 4 3 27 27 C 1.38696 * 119.99859 * 179.72095 * 2 1 3 28 28 O 1.35976 * 119.98236 * 359.97438 * 27 2 1 29 29 H 1.08998 * 109.47068 * 270.27771 * 1 2 3 30 30 H 1.08999 * 109.47503 * 30.27822 * 1 2 3 31 31 H 1.09003 * 109.46683 * 150.27791 * 1 2 3 32 32 H 1.07995 * 120.00969 * 359.97438 * 3 2 1 33 33 H 0.96998 * 119.99932 * 33.96254 * 5 4 3 34 34 H 1.09002 * 109.46883 * 59.99968 * 8 6 5 35 35 H 1.09004 * 109.47182 * 300.00665 * 8 6 5 36 36 H 0.97002 * 119.99959 * 355.04016 * 14 13 11 37 37 H 1.07997 * 120.00268 * 359.97438 * 20 19 9 38 38 H 1.07998 * 119.99390 * 180.27251 * 21 20 19 39 39 H 1.08004 * 120.00285 * 179.83293 * 22 21 20 40 40 H 1.08001 * 120.00280 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00112 * 179.97438 * 24 23 22 42 42 H 1.07998 * 120.00796 * 180.29943 * 25 4 3 43 43 H 1.07996 * 119.98958 * 179.97438 * 26 25 4 44 44 H 0.96700 * 113.99464 * 270.01877 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1962 0.0000 4 6 3.5856 1.1961 -0.0054 5 7 4.2866 2.4093 -0.0108 6 6 5.4595 2.5068 -0.6675 7 8 5.8613 1.5757 -1.3328 8 6 6.2716 3.7730 -0.5752 9 6 7.5469 3.6226 -1.4071 10 1 8.0781 2.7223 -1.0980 11 6 7.1853 3.5167 -2.8662 12 1 6.3401 4.0656 -3.2543 13 6 7.9336 2.7190 -3.7057 14 7 8.9086 1.9836 -3.2178 15 14 7.5675 2.6888 -5.5373 16 1 6.5744 1.6232 -5.8260 17 1 7.0179 4.0039 -5.9539 18 1 8.8194 2.4153 -6.2878 19 6 8.4300 4.8250 -1.1944 20 6 7.9368 6.0949 -1.4286 21 6 8.7456 7.1982 -1.2293 22 6 10.0503 7.0309 -0.8045 23 6 10.5452 5.7607 -0.5753 24 6 9.7351 4.6577 -0.7704 25 6 4.2792 -0.0069 0.0005 26 6 3.5878 -1.2020 0.0058 27 6 2.2004 -1.2011 0.0059 28 8 1.5201 -2.3785 0.0121 29 1 -0.3633 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5181 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6573 2.1315 -0.0004 33 1 3.9277 3.1788 0.4581 34 1 6.5361 3.9599 0.4655 35 1 5.6857 4.6091 -0.9569 36 1 9.1485 2.0559 -2.2807 37 1 6.9187 6.2254 -1.7645 38 1 8.3589 8.1906 -1.4081 39 1 10.6831 7.8927 -0.6514 40 1 11.5648 5.6300 -0.2438 41 1 10.1218 3.6652 -0.5917 42 1 5.3592 -0.0077 0.0012 43 1 4.1271 -2.1377 0.0100 44 1 1.3235 -2.7143 0.8973 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356525992.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:56 Heat of formation + Delta-G solvation = -57.756122 kcal Electronic energy + Delta-G solvation = -26620.492559 eV Core-core repulsion = 22887.465162 eV Total energy + Delta-G solvation = -3733.027397 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 325.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.60375 -40.43097 -39.80763 -37.77471 -36.15004 -35.27885 -33.59091 -33.25713 -31.61867 -30.89519 -29.62331 -27.69397 -26.94816 -24.87474 -23.56730 -23.34781 -22.91235 -21.60921 -20.96233 -19.29415 -18.97441 -18.27974 -17.95036 -17.28795 -16.87621 -16.48312 -16.28152 -15.75427 -15.69163 -15.50951 -15.19853 -14.83459 -14.71808 -14.33528 -14.11175 -14.05445 -14.00480 -13.65713 -13.47078 -13.38626 -13.13972 -12.84897 -12.74617 -12.70438 -12.65088 -12.07055 -11.96816 -11.77866 -11.48927 -11.40797 -11.12243 -10.83479 -10.56185 -10.36844 -9.79468 -9.65330 -9.28436 -8.92825 -8.45896 -6.11668 0.16100 0.30321 0.66601 0.72701 1.46351 1.55754 1.69359 1.76623 2.13361 2.59176 2.66695 3.09152 3.31430 3.37734 3.80311 3.87852 3.98554 4.09432 4.24521 4.27083 4.28703 4.41999 4.42687 4.46036 4.53717 4.60555 4.78621 4.81015 4.85091 4.85925 4.89702 5.04088 5.09827 5.22780 5.31752 5.32496 5.39942 5.41337 5.46883 5.54146 5.74186 5.81611 5.93978 5.94881 6.20190 6.29637 6.37196 6.56454 6.77655 6.87717 7.37073 7.64044 8.93917 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.014141 B = 0.003285 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.521306 B = 8520.521715 C = 9524.650432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.094 4.094 3 C -0.132 4.132 4 C 0.139 3.861 5 N -0.671 5.671 6 C 0.509 3.491 7 O -0.533 6.533 8 C -0.110 4.110 9 C 0.070 3.930 10 H 0.013 0.987 11 C -0.560 4.560 12 H 0.041 0.959 13 C -0.021 4.021 14 N -0.938 5.938 15 Si 1.096 2.904 16 H -0.292 1.292 17 H -0.265 1.265 18 H -0.286 1.286 19 C -0.055 4.055 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.145 4.145 23 C -0.125 4.125 24 C -0.154 4.154 25 C -0.138 4.138 26 C -0.133 4.133 27 C 0.079 3.921 28 O -0.501 6.501 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.158 0.842 33 H 0.425 0.575 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.257 0.743 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.132 0.868 41 H 0.090 0.910 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.067 4.483 12.541 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.095 4.095 3 C -0.152 4.152 4 C 0.044 3.956 5 N -0.319 5.319 6 C 0.298 3.702 7 O -0.406 6.406 8 C -0.150 4.150 9 C 0.050 3.950 10 H 0.032 0.968 11 C -0.598 4.598 12 H 0.059 0.941 13 C -0.220 4.220 14 N -0.577 5.577 15 Si 0.921 3.079 16 H -0.219 1.219 17 H -0.189 1.189 18 H -0.212 1.212 19 C -0.056 4.056 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.163 4.163 23 C -0.143 4.143 24 C -0.173 4.173 25 C -0.158 4.158 26 C -0.152 4.152 27 C 0.034 3.966 28 O -0.313 6.313 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.176 0.824 33 H 0.264 0.736 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.068 0.932 37 H 0.138 0.862 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.150 0.850 41 H 0.108 0.892 42 H 0.122 0.878 43 H 0.150 0.850 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -13.249 3.204 10.029 16.923 hybrid contribution 0.104 0.260 1.842 1.863 sum -13.145 3.464 11.871 18.048 Atomic orbital electron populations 1.20718 0.87960 1.03705 1.03728 1.20323 0.98282 0.91297 0.99590 1.20933 0.90806 0.99477 1.04009 1.17986 0.91782 0.85886 0.99906 1.43624 1.22156 1.12520 1.53626 1.21311 0.80958 0.90538 0.77429 1.90792 1.69885 1.41357 1.38593 1.21630 0.97152 0.94437 1.01734 1.17741 0.90996 0.91207 0.95019 0.96844 1.21792 1.14342 1.29817 0.93864 0.94116 1.26672 0.94200 0.92373 1.08743 1.70819 1.31501 1.39001 1.16356 0.83220 0.75801 0.76785 0.72062 1.21876 1.18947 1.21230 1.20581 0.95018 0.96321 0.93640 1.21035 1.00647 0.91889 1.00871 1.21421 0.94293 0.98974 0.99183 1.21314 0.96258 0.97105 1.01588 1.21294 0.99733 0.92795 1.00454 1.21105 0.94966 0.98390 1.02819 1.20960 0.99896 0.92200 1.02778 1.21377 0.94347 0.98043 1.01410 1.18237 0.89085 0.85862 1.03437 1.84785 1.75826 1.35596 1.35103 0.89055 0.90337 0.91033 0.82448 0.73625 0.88442 0.87858 0.93175 0.86235 0.83665 0.83554 0.84964 0.89150 0.87830 0.85003 0.73539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.57 9.79 71.23 0.70 -0.87 16 2 C -0.09 -2.12 5.89 -19.79 -0.12 -2.24 16 3 C -0.13 -3.16 9.61 22.38 0.22 -2.95 16 4 C 0.14 4.32 6.26 38.11 0.24 4.56 16 5 N -0.67 -20.10 5.35 -303.38 -1.62 -21.72 16 6 C 0.51 20.56 7.32 87.66 0.64 21.20 16 7 O -0.53 -27.99 12.78 -3.07 -0.04 -28.03 16 8 C -0.11 -4.11 4.81 29.85 0.14 -3.97 16 9 C 0.07 3.38 1.59 -12.29 -0.02 3.36 16 10 H 0.01 0.76 5.72 -2.38 -0.01 0.75 16 11 C -0.56 -31.01 6.70 25.60 0.17 -30.84 16 12 H 0.04 2.23 7.82 -2.91 -0.02 2.21 16 13 C -0.02 -1.24 5.46 84.65 0.46 -0.78 16 14 N -0.94 -60.18 13.63 21.45 0.29 -59.89 16 15 Si 1.10 54.44 29.91 68.60 2.05 56.50 16 16 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 19 C -0.05 -2.39 4.77 -19.86 -0.09 -2.48 16 20 C -0.13 -4.67 8.94 22.27 0.20 -4.47 16 21 C -0.12 -3.69 10.05 22.27 0.22 -3.46 16 22 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 23 C -0.12 -4.26 10.05 22.27 0.22 -4.04 16 24 C -0.15 -6.52 9.67 22.27 0.22 -6.30 16 25 C -0.14 -4.90 8.65 22.38 0.19 -4.70 16 26 C -0.13 -4.04 9.98 22.35 0.22 -3.82 16 27 C 0.08 2.02 6.68 22.50 0.15 2.17 16 28 O -0.50 -10.41 12.54 -93.28 -1.17 -11.58 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 1.02 8.09 -2.39 -0.02 1.00 16 31 H 0.07 1.13 7.53 -2.39 -0.02 1.11 16 32 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.42 8.71 8.82 -92.71 -0.82 7.89 16 34 H 0.10 3.06 8.14 -2.39 -0.02 3.05 16 35 H 0.10 3.40 7.39 -2.39 -0.02 3.39 16 36 H 0.26 16.63 6.47 -92.71 -0.60 16.03 16 37 H 0.12 4.16 7.41 -2.91 -0.02 4.14 16 38 H 0.15 3.35 8.06 -2.91 -0.02 3.32 16 39 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 41 H 0.09 4.08 7.95 -2.91 -0.02 4.05 16 42 H 0.10 4.37 6.48 -2.91 -0.02 4.35 16 43 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 44 H 0.41 4.09 9.06 -74.06 -0.67 3.42 16 Total: -1.00 -81.03 371.09 3.23 -77.80 By element: Atomic # 1 Polarization: 30.88 SS G_CDS: -0.28 Total: 30.60 kcal Atomic # 6 Polarization: -47.68 SS G_CDS: 3.99 Total: -43.68 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -1.33 Total: -81.61 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.21 Total: -39.60 kcal Atomic # 14 Polarization: 54.44 SS G_CDS: 2.05 Total: 56.50 kcal Total: -81.03 3.23 -77.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356525992.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.048 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds