Wall clock time and date at job start Tue Mar 31 2020 14:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 C 1.38257 * 119.99832 * 59.72788 * 4 2 1 6 6 C 1.38218 * 119.99931 * 179.79086 * 5 4 2 7 7 C 1.38253 * 119.99811 * 0.46017 * 6 5 4 8 8 C 1.38207 * 120.00062 * 359.77213 * 7 6 5 9 9 C 1.50703 * 119.99760 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.46907 * 270.01726 * 9 8 7 11 11 S 1.65599 * 119.99712 * 165.00386 * 10 9 8 12 12 O 1.42107 * 104.27677 * 181.07407 * 11 10 9 13 13 O 1.42102 * 104.27790 * 308.92621 * 11 10 9 14 14 C 1.81402 * 104.45338 * 64.99930 * 11 10 9 15 15 C 1.52997 * 109.46984 * 179.97438 * 14 11 10 16 16 C 1.53006 * 109.46955 * 179.97438 * 15 14 11 17 17 C 1.50697 * 109.46995 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00703 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99708 * 180.02562 * 17 16 15 20 20 N 1.31521 * 120.00085 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00059 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47530 * 89.99910 * 21 19 17 23 23 H 1.48503 * 109.47242 * 210.00044 * 21 19 17 24 24 H 1.48503 * 109.47109 * 329.99768 * 21 19 17 25 25 C 1.38207 * 120.00269 * 240.00057 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.08002 * 119.99958 * 0.02562 * 5 4 2 34 34 H 1.08006 * 119.99591 * 180.24974 * 6 5 4 35 35 H 1.08004 * 119.99494 * 179.79283 * 7 6 5 36 36 H 1.08997 * 109.47381 * 30.02129 * 9 8 7 37 37 H 1.09001 * 109.46866 * 150.02093 * 9 8 7 38 38 H 0.97002 * 120.00170 * 345.00167 * 10 9 8 39 39 H 1.08994 * 109.47079 * 300.00184 * 14 11 10 40 40 H 1.08999 * 109.47041 * 60.00204 * 14 11 10 41 41 H 1.08994 * 109.47490 * 300.00087 * 15 14 11 42 42 H 1.09008 * 109.47142 * 60.00472 * 15 14 11 43 43 H 1.09003 * 109.47038 * 300.00568 * 16 15 14 44 44 H 1.09006 * 109.46805 * 59.99765 * 16 15 14 45 45 H 0.97001 * 119.99735 * 180.02562 * 20 19 17 46 46 H 1.07997 * 120.00321 * 359.97438 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 6 1.6938 -0.2415 -2.4861 6 6 2.1581 -0.8905 -3.6146 7 6 2.9533 -2.0143 -3.4877 8 6 3.2879 -2.4859 -2.2324 9 6 4.1552 -3.7106 -2.0940 10 7 3.3090 -4.9057 -2.0492 11 16 3.9790 -6.4034 -2.2735 12 8 2.8767 -7.2964 -2.1900 13 8 4.7289 -6.2756 -3.4737 14 6 5.0847 -6.6222 -0.8522 15 6 5.7711 -7.9864 -0.9454 16 6 6.7042 -8.1708 0.2531 17 6 7.3808 -9.5142 0.1610 18 1 7.1670 -10.1707 -0.6695 19 6 8.2727 -9.9052 1.1370 20 7 8.8628 -11.0778 1.0569 21 14 8.6420 -8.7700 2.5738 22 1 7.6917 -9.0473 3.6808 23 1 10.0312 -9.0025 3.0441 24 1 8.4965 -7.3575 2.1388 25 6 2.8270 -1.8341 -1.1035 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.0695 0.6343 -2.5852 34 1 1.8969 -0.5217 -4.5956 35 1 3.3134 -2.5234 -4.3695 36 1 4.8308 -3.7755 -2.9469 37 1 4.7364 -3.6422 -1.1744 38 1 2.3563 -4.8197 -1.8880 39 1 5.8385 -5.8349 -0.8537 40 1 4.5059 -6.5694 0.0699 41 1 5.0171 -8.7735 -0.9437 42 1 6.3499 -8.0397 -1.8676 43 1 7.4582 -7.3836 0.2509 44 1 6.1258 -8.1172 1.1755 45 1 9.4901 -11.3530 1.7438 46 1 3.0882 -2.2029 -0.1226 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356712952.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:23 Heat of formation + Delta-G solvation = -78.926850 kcal Electronic energy + Delta-G solvation = -24639.413415 eV Core-core repulsion = 21040.911938 eV Total energy + Delta-G solvation = -3598.501477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.150 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.08893 -37.00852 -36.51336 -35.80815 -34.84739 -34.81934 -32.22034 -31.26996 -30.17191 -28.38815 -27.55751 -26.00863 -23.62006 -23.46512 -22.40519 -20.54803 -19.96979 -19.26828 -17.59640 -17.11039 -16.89175 -16.35933 -16.15335 -15.88262 -15.34650 -15.12261 -14.40267 -14.29003 -14.19722 -14.11853 -13.93677 -13.51837 -13.25146 -12.88438 -12.82127 -12.50460 -12.39720 -12.34904 -12.15042 -12.08496 -11.93764 -11.86095 -11.58773 -11.58503 -11.53190 -11.04103 -11.00993 -10.96448 -10.94054 -10.10358 -9.95811 -9.83721 -9.42019 -9.26452 -9.17658 -8.97959 -8.59366 -6.08990 -4.08290 0.34270 0.99195 1.06762 2.80189 3.25940 3.33523 3.35363 3.45889 3.87777 4.15684 4.29329 4.35689 4.39630 4.46501 4.67231 4.77481 4.80666 4.90099 4.94551 5.04257 5.06330 5.15109 5.16232 5.20330 5.23711 5.24999 5.40553 5.44476 5.56917 5.60857 5.69106 5.75099 5.76823 5.80107 5.81430 6.13057 6.15563 6.25514 6.25974 6.29552 6.65875 6.66703 6.82848 7.11693 7.25717 7.70401 8.47046 8.95533 9.52051 11.04286 Molecular weight = 325.15amu Principal moments of inertia in cm(-1) A = 0.015367 B = 0.002502 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.704904 B =11190.255831 C =12368.348938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.058 4.058 3 C -0.144 4.144 4 C -0.079 4.079 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.104 4.104 8 C -0.094 4.094 9 C 0.154 3.846 10 N -1.121 6.121 11 S 2.603 3.397 12 O -0.960 6.960 13 O -0.959 6.959 14 C -0.616 4.616 15 C -0.098 4.098 16 C -0.004 4.004 17 C -0.527 4.527 18 H 0.075 0.925 19 C 0.067 3.933 20 N -0.900 5.900 21 Si 0.881 3.119 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.266 1.266 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.416 0.584 39 H 0.127 0.873 40 H 0.129 0.871 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.020 0.980 44 H 0.015 0.985 45 H 0.264 0.736 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.145 27.227 -4.274 31.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.201 4.201 4 C -0.079 4.079 5 C -0.128 4.128 6 C -0.138 4.138 7 C -0.123 4.123 8 C -0.095 4.095 9 C 0.029 3.971 10 N -0.879 5.879 11 S 2.698 3.302 12 O -0.950 6.950 13 O -0.949 6.949 14 C -0.747 4.747 15 C -0.137 4.137 16 C -0.043 4.043 17 C -0.565 4.565 18 H 0.093 0.907 19 C -0.135 4.135 20 N -0.539 5.539 21 Si 0.708 3.292 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.120 4.120 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.250 0.750 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.090 0.910 42 H 0.091 0.909 43 H 0.038 0.962 44 H 0.034 0.966 45 H 0.074 0.926 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -15.998 26.515 -4.967 31.363 hybrid contribution 0.165 0.811 1.511 1.723 sum -15.833 27.326 -3.456 31.770 Atomic orbital electron populations 1.21861 0.94241 1.02156 1.01913 1.20146 0.96030 0.96097 0.95400 1.21858 1.01333 0.95033 1.01911 1.19857 0.97636 0.95666 0.94778 1.21006 0.99909 0.99932 0.91988 1.21149 0.98060 0.95908 0.98637 1.21153 0.97800 0.96251 0.97102 1.19778 0.99582 0.96636 0.93515 1.20218 0.91825 0.82183 1.02914 1.55791 1.19059 1.22039 1.91001 1.05243 0.75407 0.72475 0.77049 1.93591 1.50921 1.62752 1.87778 1.93574 1.73896 1.85041 1.42412 1.30601 1.15412 1.08981 1.19721 1.21316 0.99554 0.89979 1.02875 1.19533 0.94203 0.98045 0.92531 1.21135 1.24395 1.00726 1.10240 0.90722 1.25034 0.95468 0.94999 0.97958 1.69915 1.29080 1.19922 1.34951 0.86769 0.77673 0.81827 0.82938 1.20235 1.21277 1.19056 1.21025 0.97544 0.95157 0.98321 0.92417 0.92499 0.92332 0.90331 0.92501 0.92341 0.92444 0.86203 0.85923 0.85612 0.89188 0.90779 0.75022 0.85482 0.85248 0.90969 0.90926 0.96178 0.96622 0.92625 0.85752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.00 37.16 0.33 -0.46 16 2 C -0.06 -0.35 3.09 -91.77 -0.28 -0.64 16 3 C -0.14 -0.78 9.01 37.16 0.33 -0.44 16 4 C -0.08 -0.60 4.78 -104.63 -0.50 -1.10 16 5 C -0.11 -0.80 8.71 -39.58 -0.34 -1.14 16 6 C -0.12 -0.91 10.05 -39.58 -0.40 -1.30 16 7 C -0.10 -0.90 9.70 -39.59 -0.38 -1.28 16 8 C -0.09 -0.82 5.28 -104.62 -0.55 -1.37 16 9 C 0.15 1.38 6.26 -5.19 -0.03 1.35 16 10 N -1.12 -11.34 5.88 -11.65 -0.07 -11.41 16 11 S 2.60 35.97 5.46 -107.50 -0.59 35.38 16 12 O -0.96 -16.35 18.08 -57.54 -1.04 -17.39 16 13 O -0.96 -16.10 17.50 -57.54 -1.01 -17.10 16 14 C -0.62 -8.58 6.07 37.16 0.23 -8.36 16 15 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 16 C 0.00 -0.10 4.04 -27.88 -0.11 -0.22 16 17 C -0.53 -14.97 9.66 -34.44 -0.33 -15.30 16 18 H 0.07 2.27 7.99 -52.49 -0.42 1.86 16 19 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.68 13.96 55.43 0.77 -26.91 16 21 Si 0.88 21.34 27.47 -169.99 -4.67 16.68 16 22 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 25 C -0.10 -0.82 9.33 -39.59 -0.37 -1.19 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.30 7.37 -51.93 -0.38 -0.09 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.47 7.88 -51.93 -0.41 0.06 16 30 H 0.06 0.29 7.40 -51.93 -0.38 -0.10 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.12 0.68 7.10 -52.49 -0.37 0.31 16 34 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 35 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 36 H 0.09 0.82 7.64 -51.93 -0.40 0.43 16 37 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 38 H 0.42 3.71 8.61 -34.47 -0.30 3.42 16 39 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.13 1.55 8.14 -51.92 -0.42 1.13 16 41 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.07 1.39 8.14 -51.92 -0.42 0.96 16 43 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 44 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.12 0.86 7.95 -52.49 -0.42 0.44 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -35.63 389.06 -11.04 -46.68 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -7.66 Total: -0.16 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: -2.65 Total: -31.63 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.71 Total: -38.32 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -2.05 Total: -34.49 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 35.97 SS G_CDS: -0.59 Total: 35.38 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.63 -11.04 -46.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356712952.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.250 kcal (2) G-P(sol) polarization free energy of solvation -35.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds